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https://doi.org/10.12688/f1000research.19310.1
Software Tool Article metrics
A new method for detecting abrupt shifts in time series
[version 1; peer review: 2 approved with reservations]
Chris A. Boulton, Timothy M. Lenton
Peer Reviewers Valerie N. Livina; Sonia Kéfi
  • Funder
  • Natural Environment Research Council
PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.18214.2
Software Tool Article metrics
Revised
Assessing drug target suitability using TargetMine
[version 2; peer review: 2 approved]
Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Peer Reviewers Rachel Lyne; Anne Hersey
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.19221.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Innovator Award recognizes William Stafford Noble
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19220.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Overton Prize: Christophe Dessimoz
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.18187.1
Method Article metrics
FaceSync: Open source framework for recording facial expressions with head-mounted cameras
[version 1; peer review: 2 approved]
Jin Hyun Cheong, Sawyer Brooks, Luke J. Chang
Peer Reviewers Elliott Ross; Sylwia Hyniewska
PUBLISHED 21 May 2019
https://doi.org/10.12688/f1000research.8192.2
Method Article metrics
Revised
A predictive model of overall survival in patients with metastatic castration-resistant prostate cancer
[version 2; peer review: 2 approved]
Mehrad Mahmoudian, Fatemeh Seyednasrollah, Liisa Koivu, Outi Hirvonen, Sirkku Jyrkkiö, Laura L. Elo
Peer Reviewers Motoki Shiga; Peter K Rogan
  • Funders
  • University of Turku Graduate School
  • Sigrid Juselius Foundation
LATEST VERSION PUBLISHED 17 May 2019
https://doi.org/10.12688/f1000research.18838.1
Research Article metrics
The impact of physical activity to the child’s quality of life: a bibliometric study
[version 1; peer review: 1 approved, 2 approved with reservations]
Jernej Završnik, Peter Kokol, Helena Blažun Vošner
Peer Reviewers Zachi Grossman; Manuel Jesus Cobo; Julije Mestrovic
PUBLISHED 16 May 2019
https://doi.org/10.12688/f1000research.14012.3
Software Tool Article metrics
Revised
Gene Annotation Easy Viewer (GAEV): Integrating KEGG’s Gene Function Annotations and Associated Molecular Pathways
[version 3; peer review: 3 approved]
Trung Huynh, Sen Xu
Peer Reviewers Fragiskos N Kolisis and Efthymios Ladoukakis; Tonia S. Schwartz; Simo V. Zhang
  • Funder
  • University of Texas at Arlington
LATEST VERSION PUBLISHED 09 May 2019
https://doi.org/10.12688/f1000research.13204.3
Method Article metrics
Revised
META-pipe cloud setup and execution
[version 3; peer review: 2 approved, 1 approved with reservations]
Aleksandr Agafonov, Kimmo Mattila, Cuong Duong Tuan, Lars Tiede, Inge Alexander Raknes, Lars Ailo Bongo
Peer Reviewers Olivier Collin; Kang Ning; Chunlei Wu
  • Funders
  • Norges Forskningsråd
  • UiT The Arctic University of Norway
  • EGI-Engage
  • Horizon 2020
LATEST VERSION PUBLISHED 02 May 2019
https://doi.org/10.12688/f1000research.18676.1
Software Tool Article metrics
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
[version 1; peer review: 2 approved]
Saket Choudhary
Peer Reviewers Simon Andrews; Ryan K. Dale
PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.18458.2
Software Tool Article metrics
Revised
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
[version 2; peer review: 2 approved]
Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Peer Reviewers Marta Szachniuk; Jerome Waldispühl and Roman Sarrazin-Gendron
  • Funder
  • Austrian Science Fund
LATEST VERSION PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.15091.2
Research Note metrics
Revised
Investigation of gut microbiome association with inflammatory bowel disease and depression: a machine learning approach
[version 2; peer review: 2 approved with reservations]
Pedro Morell Miranda, Francesca Bertolini, Haja N. Kadarmideen
Peer Reviewers Yasir Suhail; Manikandan Narayanan
  • Funders
  • Technical University of Denmark, DTU Bioinformatics
  • The Danish Independent Research Council
LATEST VERSION PUBLISHED 17 Apr 2019
https://doi.org/10.12688/f1000research.18636.1
Method Article metrics
A Bioconductor workflow for the Bayesian analysis of spatial proteomics
[version 1; peer review: 1 approved, 2 approved with reservations]
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D.W. Kirk, Laurent Gatto
Peer Reviewers Pierre M. Jean Beltran; Susan Holmes; Angus Lamond and Alejandro Brenes Murillo
  • Funders
  • Medical Research Council
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.17894.1
Research Article metrics RETRACTED
RETRACTED:  Consumer perspectives on reproductive health after using the Jakpros smart mobile health application: A cross-sectional, qualitative study
[version 1; peer review: 1 not approved]
Budi Wiweko, Aida Riyanti, Shanty Olivia, Muhammad Priangga, Vita Silvana, Aruan Lewis Putro, Yohanes Satrya Wibawa, Ilonna Putri Pertiwi, Sarah Chairani Zakirah, Achmad Kemal Harzif, Gita Pratama, R. Muharam, Andon Hestiantoro
  • Funder
  • United States Agency for International Development
PUBLISHED 08 Apr 2019
https://doi.org/10.12688/f1000research.17363.2
Research Article metrics
Revised
Transcription factor binding site clusters identify target genes with similar tissue-wide expression and buffer against mutations
[version 2; peer review: 2 approved]
Ruipeng Lu, Peter K. Rogan
Peer Reviewers Daphne Ezer; Nicolae Radu Zabet
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ontario Centres of Excellence
  • Cytognomix Inc.
  • Shared Hierarchical Academic Research Computing Network
  • Southern Ontario Smart Computing Innovation
  • Western University
  • Compute Canada
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 08 Apr 2019
https://doi.org/10.12688/f1000research.17710.2
Opinion Article metrics
Revised
Open laboratory notebooks: good for science, good for society, good for scientists
[version 2; peer review: 2 approved, 1 approved with reservations]
Matthieu Schapira, The Open Lab Notebook Consortium, Rachel J. Harding
Peer Reviewers Matthew H. Todd, Edwin Tse, Marat Korsik and Mathamsanqa Bhebhe; Lara M. Mangravite; Jean-Baptiste Poline
  • Funders
  • Eshelman Institute for Innovation, University of North Carolina at Chapel Hill
  • Innovative Medicines Initiative
  • Leicester Institute of Chemical and Structural Biology
  • Ontario Ministry of Research, Innovation and Science
  • Canada Foundation for Innovation
  • Genome Canada
  • Wellcome Trust
  • Huntington's Disease Society of America
LATEST VERSION PUBLISHED 02 Apr 2019
https://doi.org/10.12688/f1000research.17548.2
Software Tool Article metrics
Revised
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python
[version 2; peer review: 2 approved]
Klara Kaleb, Alex Warwick Vesztrocy, Adrian M. Altenhoff, Christophe Dessimoz
Peer Reviewers Bastian Greshake Tzovaras and Ngoc-Vinh Tran; Laurent Gatto
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • University College London
  • Swiss State Secretariat for Education
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 29 Mar 2019
https://doi.org/10.12688/f1000research.17613.2
Research Article metrics
Revised
EEG correlation at a distance: A re-analysis of two studies using a machine learning approach
[version 2; peer review: 2 approved]
Marco Bilucaglia, Luciano Pederzoli, William Giroldini, Elena Prati, Patrizio E. Tressoldi
Peer Reviewers Arnaud Delorme; Schubert R. Carvalho
LATEST VERSION PUBLISHED 29 Mar 2019
https://doi.org/10.12688/f1000research.17139.3
Software Tool Article metrics
Revised
Radtools: R utilities for convenient extraction of medical image metadata
[version 3; peer review: 2 approved]
Pamela H. Russell, Debashis Ghosh
Peer Reviewers Andrey Fedorov; Volker Schmid
  • Funder
  • Cancer Center, University of Colorado
LATEST VERSION PUBLISHED 25 Mar 2019
https://doi.org/10.12688/f1000research.15140.2
Opinion Article metrics
Revised
Recommendations for the packaging and containerizing of bioinformatics software
[version 2; peer review: 2 approved, 1 approved with reservations]
Bjorn Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C. Jimenez, BioContainers Community, Yasset Perez-Riverol
Peer Reviewers Ka Yee Yeung and Daniel Kristiyanto; Monther Alhamdoosh; Evan Floden
  • Funders
  • Horizon 2020
  • National Institutes of Health
LATEST VERSION PUBLISHED 20 Mar 2019
481-500 of 1,017 ARTICLES
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