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https://doi.org/10.12688/f1000research.17555.1
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An interpretable machine learning model of biological age
[version 1; peer review: 2 approved with reservations]
Thomas R. Wood, Christopher Kelly, Megan Roberts, Bryan Walsh
Peer Reviewers Alex Zhavoronkov; Peter O. Fedichev
PUBLISHED 04 Jan 2019
https://doi.org/10.12688/f1000research.10767.3
Software Tool Article metrics
Revised
Automated Wormscan
[version 3; peer review: 2 approved, 1 approved with reservations]
Timothy Puckering, Jake Thompson, Sushruth Sathyamurthy, Sinduja Sukumar, Tirosh Shapira, Paul Ebert
Peer Reviewers Elena M. Vayndorf; Nathaniel Szewczyk; Courtney Scerbak
  • Funders
  • Australian Federal Government
  • Plant Biosecurity Cooperative Research Centre
  • Australian Research Council
LATEST VERSION PUBLISHED 04 Jan 2019
https://doi.org/10.12688/f1000research.17351.1
Research Article metrics
Robust and efficient identification of biomarkers from RNA-Seq data using median control chart
[version 1; peer review: 1 approved with reservations, 1 not approved]
Md Shahjaman, Habiba Akter, Md. Mamunur Rashid, Md. Ibnul Asifuzzaman, Md. Bipul Hossen, Md. Rezanur Rahman
Peer Reviewers Lei Li; Jun Li
PUBLISHED 03 Jan 2019
https://doi.org/10.12688/f1000research.15020.2
Opinion Article metrics
Revised
Lost in translation
[version 2; peer review: 2 approved]
Parashkev Nachev, Geraint Rees, Richard Frackowiak
Peer Reviewers Michel Thiebaut de Schotten; Tor D. Wager
  • Funders
  • Department of Health
  • Wellcome Trust
  • UCLH NIHR Biomedical Research Centre
LATEST VERSION PUBLISHED 02 Jan 2019
https://doi.org/10.12688/f1000research.16959.1
Opinion Article metrics
Hackathon-driven tutorial development
[version 1; peer review: 1 approved, 1 approved with reservations]
Bruno M. Grande, Arjun Baghela, Anna Cavalla, Florian Privé, Peter Zhang, Yisong Zhen
Peer Reviewers Ming Tang; Brad A. Chapman
PUBLISHED 24 Dec 2018
https://doi.org/10.12688/f1000research.17456.1
Software Tool Article metrics
pdb-tools: a swiss army knife for molecular structures
[version 1; peer review: 2 approved]
João P. G. L. M. Rodrigues, João M.C. Teixeira, Mikaël Trellet, Alexandre M. J. J. Bonvin
Peer Reviewers Bruno L. Victor; Peter W. Rose
  • Funders
  • Niels-Stensen Fellowship
  • Horizon 2020
PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.15809.2
Research Article metrics
Revised
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data
[version 2; peer review: 3 approved]
Saskia Freytag, Luyi Tian, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo
Peer Reviewers Joshua W. K. Ho; Shila Ghazanfar; Stephanie C Hicks
  • Funder
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.15659.1
Review metrics
Recent advances in understanding Propionibacterium acnes (Cutibacterium acnes) in acne
[version 1; peer review: 2 approved]
Eftychia Platsidaki, Clio Dessinioti
Peer Reviewers Christine Roques; Andrew McDowell
PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.13849.2
Software Tool Article metrics
Revised
Breathe Easy EDA: A MATLAB toolbox for psychophysiology data management, cleaning, and analysis
[version 2; peer review: 2 approved]
John C. Ksander, Sarah M. Kark, Christopher R. Madan
Peer Reviewers Edwin S.  Dalmaijer; Jens Foell
  • Funders
  • Searle scholars grant
  • National Institute of Mental Health
  • National Institutes of Health
  • National Institute of General Medical Sciences
  • Canadian Institutes of Health Research
  • National Science Foundation
LATEST VERSION PUBLISHED 14 Dec 2018
https://doi.org/10.12688/f1000research.17425.1
Opinion Article metrics
The principles of tomorrow's university
[version 1; peer review: 2 approved]
Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly Bik, Carl Boettiger, Christine L. Borgman, C. Titus Brown, Stuart Buck, Randy Burd, Anita de Waard, Martin Paul Eve, Brian E. Granger, Josh Greenberg, Adina Howe, Bill Howe, May Khanna, Timothy L. Killeen, Matthew Mayernik, Erin McKiernan, Chris Mentzel, Nirav Merchant, Kyle E. Niemeyer, Laura Noren, Sarah M. Nusser, Daniel A. Reed, Edward Seidel, MacKenzie Smith, Jeffrey R. Spies, Matt Turk, John D. Van Horn, Jay Walsh
Peer Reviewers Lucy Montgomery; Olivia Guest
  • Funders
  • Elsevier Foundation
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 11 Dec 2018
https://doi.org/10.12688/f1000research.15895.2
Software Tool Article metrics
Revised
NovoGraph: Human genome graph construction from multiple long-read de novo assemblies
[version 2; peer review: 2 approved]
Evan Biederstedt, Jeffrey C. Oliver, Nancy F. Hansen, Aarti Jajoo, Nathan Dunn, Andrew Olson, Ben Busby, Alexander T. Dilthey
Peer Reviewers Bjarni V. Halldorsson; Korbinian Schneeberger and Manish Goel
  • Funders
  • U.S. National Library of Medicine
  • Jürgen Manchot Stiftung
  • National Institutes of Health
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 10 Dec 2018
https://doi.org/10.12688/f1000research.14451.3
Research Article metrics
Revised
Predicting lithium treatment response in bipolar patients using gender-specific gene expression biomarkers and machine learning
[version 3; peer review: 1 approved, 2 approved with reservations]
Andy R. Eugene, Jolanta Masiak, Beata Eugene
Peer Reviewers Ming-Fen Ho; Sunil V. Kalmady; Duan Liu
LATEST VERSION PUBLISHED 07 Dec 2018
https://doi.org/10.12688/f1000research.15622.1
Research Article metrics
Wearable technology and health: A bibliometric analysis using SciMAT
[version 1; peer review: 1 approved with reservations, 1 not approved]
Marlon Felipe Burbano-Fernandez, Gustavo Ramirez-Gonzalez
Peer Reviewers Peter Kokol; Manuel Jesus Cobo
PUBLISHED 04 Dec 2018
https://doi.org/10.12688/f1000research.15804.2
Research Article metrics
Revised
Neuromodulation influences synchronization and intrinsic read-out
[version 2; peer review: 2 approved, 1 approved with reservations, 1 not approved]
Gabriele Scheler
Peer Reviewers Joel Zylberberg; Guillaume Drion; Krešimir Josić; Jonathan P. Miller
LATEST VERSION PUBLISHED 02 Dec 2018
https://doi.org/10.12688/f1000research.15486.2
Method Article metrics
Revised
Identifying communities from multiplex biological networks by randomized optimization of modularity
[version 2; peer review: 3 approved, 1 approved with reservations]
Gilles Didier, Alberto Valdeolivas, Anaïs Baudot
Peer Reviewers Emre Guney; Lenore J. Cowen; Yasir Suhail; Arda Halu
  • Funders
  • Excellence Initiative of Aix- Marseille University
  • French “Plan Cancer 2009–2013”
  • Centre National de la Recherche Scientifique
LATEST VERSION PUBLISHED 22 Nov 2018
https://doi.org/10.12688/f1000research.16409.2
Software Tool Article metrics
Revised
gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2
[version 2; peer review: 2 approved]
Jesper L.V. Maag
Peer Reviewers Helder I. Nakaya; Saskia Freytag
LATEST VERSION PUBLISHED 20 Nov 2018
https://doi.org/10.12688/f1000research.15125.2
Data Note metrics
Revised
Head models of healthy and depressed adults for simulating the electric fields of non-invasive electric brain stimulation
[version 2; peer review: 2 approved]
Nya Mehnwolo Boayue, Gábor Csifcsák, Oula Puonti, Axel Thielscher, Matthias Mittner
Peer Reviewers Ilkka Laakso; Yu Huang
  • Funders
  • Helse Nord RHF
  • Universitetet i Tromsø
  • Lundbeckfonden
  • Novo Nordisk Fonden
LATEST VERSION PUBLISHED 15 Nov 2018
https://doi.org/10.12688/f1000research.16680.1
Software Tool Article metrics
ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations
[version 1; peer review: 1 approved, 2 approved with reservations]
Gaurav S. Kandlikar, Zachary J. Gold, Madeline C. Cowen, Rachel S. Meyer, Amanda C. Freise, Nathan J.B. Kraft, Jordan Moberg-Parker, Joshua Sprague, David J. Kushner, Emily E. Curd
Peer Reviewers Tristan Cordier; Holly M. Bik; Niklaus J. Grünwald and Zach Foster
  • Funders
  • University of California President’s Research Catalyst Awards
  • National Science Foundation
PUBLISHED 01 Nov 2018
https://doi.org/10.12688/f1000research.13349.2
Method Article metrics PEER REVIEW DISCONTINUED
Revised
Fast P(RMNE): Fast forensic DNA probability of random man not excluded calculation
[version 2; peer review: peer review discontinued]
Darrell O. Ricke, Steven Schwartz
Peer Reviewers Invited
  • Funder
  • Assistant Secretary of Defense for Research & Engineering
LATEST VERSION PUBLISHED 31 Oct 2018
https://doi.org/10.12688/f1000research.16060.1
Research Article metrics
DomainBuilder: the knowledge authoring system for SlideTutor Intelligent Tutoring system
[version 1; peer review: 1 approved, 1 approved with reservations]
Eugene Tseytlin, Faina Linkov, Melissa Castine, Elizabeth Legowski, Rebecca S. Jacobson
Peer Reviewers Ana Marusic; Claudia Mello-Thoms
  • Funders
  • Agency for Healthcare Research and Quality
  • National Cancer Institute
  • National Institutes of Health
PUBLISHED 31 Oct 2018
521-540 of 1,017 ARTICLES
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