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https://doi.org/10.12688/f1000research.168786.1
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Identification of Viral Variants from Functional Genomics Data
[version 1; peer review: 1 approved with reservations]
Florian Röckl, Caroline C. Friedel
Peer Reviewers Dóra Tombácz
  • Funder
  • Deutsche Forschungsgemeinschaft
PUBLISHED 18 Aug 2025
https://doi.org/10.12688/f1000research.164432.1
Case Report metrics AWAITING PEER REVIEW
Case Report: Methamphetamine overdose causing ileal perforation
[version 1; peer review: awaiting peer review]
Anupam K. Gupta, Samuel Feinberg, Anudeep Surendranath
Peer Reviewers Invited
PUBLISHED 15 Aug 2025
https://doi.org/10.12688/f1000research.163596.2
Method Article metrics
Revised
Methodology for generating chorioallantoic membrane patient-derived xenograft (CAM-PDX) models of pleural mesothelioma and performing preclinical imaging for the translation of cancer studies and drug screening.
[version 2; peer review: 2 approved]
Jan Schulze, Sarah Barnett, Liam Shaw, Anne Herrmann, Harish Poptani, Doris M Rassl, Alexander Haragan, Michael Shackcloth, Joseph J Sacco, Judy M Coulson
Peer Reviewers Ulrich Jarry; Stuart A. Clayton
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • North West Cancer Research
LATEST VERSION PUBLISHED 14 Aug 2025
https://doi.org/10.12688/f1000research.166849.1
Genome Note metrics
Draft genome assembly of the slender walking catfish, Prophagorus nieuhofii
[version 1; peer review: 2 approved with reservations, 1 not approved]
Imron Imron, Fajar Anggraeni, Rahmat Hidayat, Jadmiko Darmawan, Otong Zenal Arifin, Daniel Frikli Mokodongan, Rosita Rosita, Luthfi Nurhidayat
Peer Reviewers Gulab D. Khedkar; Geoffrey C. Waldbieser; Haiyang Liu
  • Funder
  • Lembaga Pengelola Dana Pendidikan
PUBLISHED 14 Aug 2025
https://doi.org/10.12688/f1000research.164444.1
Research Article metrics AWAITING PEER REVIEW
Linezolid-associated optic neuropathy in drug-resistant tuberculosis patients in Sulianti Saroso Infectious Disease Hospital
[version 1; peer review: awaiting peer review]
Emilia Setyaadmadja, Yunita Sari, Ardhika Prasetya, Rosamarlina -, Pompini Agustina Sitompul, Adria Rusli, Titi Sundari, Faisal Matondang, Haruyuki Dewi Faisal, Siti Maemun
Peer Reviewers Invited
  • Funder
  • No
PUBLISHED 13 Aug 2025
https://doi.org/10.12688/f1000research.167153.1
Research Article metrics
Isolation of Apigenin from Sungkai (Peronema canescens) Leaves and Its Immunomodulatory Effects: An In Vivo Study on Granzyme B, Interferon-γ, and Perforin Expression with Supporting In Silico Analysis
[version 1; peer review: 2 approved, 2 approved with reservations]
Dwisari Dillasamola, Yufri Aldi, Najmiatul Fitria, Biomechy Oktomalioputri, Uce Lestari, Risma Multia
Peer Reviewers Dharmalingam Kirubakaran; Valentina Mittova; Bushra Hussain Shnawa; Pitchaporn Wanyo
  • Funder
  • Universitas Andalas
PUBLISHED 08 Aug 2025
https://doi.org/10.12688/f1000research.166538.1
Review metrics
White paper: standards for handling and analyzing plant pan-genomes
[version 1; peer review: 2 approved with reservations]
Marc C. Heuermann, Pedro Barros, Sebastian Beier, Heidrun Gundlach, Jorge Alvarez-Jarreta, Keywan Hassani-Pak, Patrick König, Anne Fiebig, Tim Godec, Kristina Gruden, Nadja Nolte, Marko Petek, Uwe Scholz, Maja Zagorščak, Klaas Vandepoele, Michiel Van Bel
Peer Reviewers Sunil Kumar Sahu; Xiaoming Xie
  • Funders
  • ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
  • Federal Ministry of Education and Research
PUBLISHED 28 Jul 2025
https://doi.org/10.12688/f1000research.166852.1
Systematic Review metrics AWAITING PEER REVIEW
Greenspace exposure and associated health outcomes: an updated systematic review of reviews
[version 1; peer review: awaiting peer review]
Brittnee Bryer, Nicholas J Osborne, Jialu Wang, Rajarshi Dasgupta, Gail Williams, Darsy Darssan
Peer Reviewers Invited
PUBLISHED 24 Jul 2025
https://doi.org/10.12688/f1000research.139476.2
Research Article metrics
Revised
Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains
[version 2; peer review: 1 approved, 1 approved with reservations]
Shervin Goudarzi, Meghana Pagadala, Adam Klie, James V Talwar, Hannah Carter
Peer Reviewers Charu Mehta; Chiara Herzog
  • Funders
  • National Institutes of Health, National Cancer Institute
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 24 Jul 2025
https://doi.org/10.12688/f1000research.166880.1
Research Article metrics
The Relation of Seminal Cell-Free DNA and Total Antioxidant Capacity with  Intracytoplasmic Sperm Injection Outcomes in Iraqi Infertile men
[version 1; peer review: 1 approved]
Hadeer S. Al- Shammary, Hanan L. Al-Omary
Peer Reviewers Siti Maulida
  • Funder
  • No funding
PUBLISHED 22 Jul 2025
https://doi.org/10.12688/f1000research.152489.3
Research Article metrics
Revised
Can indoor plants reduce formaldehyde levels in the anatomy dissection hall? A study to evaluate the practicality of using plants in reducing formaldehyde levels
[version 3; peer review: 2 approved, 2 approved with reservations]
Adish G Joshi, Dhiren Punja, Rohini Punja
Peer Reviewers Kumar Satish Ravi; Ranganath Vallabhajosyula; Yasar Sajjad; Choy Ker Woon
LATEST VERSION PUBLISHED 22 Jul 2025
https://doi.org/10.12688/f1000research.164600.1
Research Article metrics AWAITING PEER REVIEW
Characterization of red pigmented yeasts and genes associated with astaxanthin synthesis in Rhodotorula mucilaginosa HL26-1 and Rhodotorula paludigena LL69-1
[version 1; peer review: awaiting peer review]
Patcharaporn Hoondee, Nisachon Tedsree, Sukanya Phuengjayaem, Engkarat Kingkaew, Boonchoo Sritularak, Pornchai Rojsitthisak, Takuji Nakashima, Worathat Thitikornpong, Somboon Tanasupawat
Peer Reviewers Invited
  • Funder
  • Thailand Science Research and Innovation Fund Chulalongkorn University
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.164798.1
Systematic Review metrics
THE PROTECTIVE ROLE OF FLAVONOIDS IN AMNESIA -SYSTEMATIC REVIEW
[version 1; peer review: 2 approved, 1 approved with reservations]
Regan Mujinya, Swase Dominic Terkimbi, Victor Otu Oka, Monday Etukudo Ekon, Makena Wusa, Elna Owembabazi, Patrick Aja Maduabuchi, Daniel Udofia Owu
Peer Reviewers Zeenath Banu; Rajwinder Kaur; Yujun Hou
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.163436.1
Research Article metrics
Effects of Flunitrazepam Drug on the Decomposition Process of Pigs Liver in PMI Determination: A Histopathology Perspective
[version 1; peer review: 1 approved]
Daniel Gachuiri Njau, Edward K. Muge, Peter W. Kinyanjui, James M. Mbaria, John K. Kiai, Nichodemus M. Kamuti, Peter K. Gathumbi
Peer Reviewers Ucu Julita
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.161391.2
Systematic Review metrics
Revised
Evaluation of external vs. internal focus of attention in Parkinson's disease: A systematic review and meta-analysis during on and off medication states
[version 2; peer review: 1 approved]
Maël Krieg, Gaël Christen, Manon Tschopp, Katia Giacomino, Michela Bassolino, Karl Sattelmayer
Peer Reviewers Sachchida Rai and Payal Singh
LATEST VERSION PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.166855.1
Software Tool Article metrics
KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
[version 1; peer review: 1 approved with reservations]
Satya N.V Arjunan, Anton Shpak, George W. Parker, Adam P. Hill
Peer Reviewers Amelia S Power and Amanda Groenewald
  • Funders
  • Targeted Translation Research Accelerator
  • New South Wales Office for Health and Medical Research
PUBLISHED 17 Jul 2025
https://doi.org/10.12688/f1000research.166660.1
Systematic Review metrics AWAITING PEER REVIEW
Association Between Angiotensin Converting Enzyme Insertion / Deletion Genotypes and Diabetic Nephropathy Defined by Urinary Albumin-to-Creatinine Ratio: A Systematic Review and Meta-Analysis
[version 1; peer review: awaiting peer review]
Ritah Kiconco, Robert Kalyesubula, Jazira Tumusiime, Raymond Atwine, Charles Nkubi Bagenda, Simon Peter Rugera, Bosco Bekiita Agaba, Erick Nyakundi Ondari, Deusdedit Tusubira, Martha Lyaka, Moses Ocan, Alison Annet Kinengyere, Ekwaro A. Obuku, Gertrude N. Kiwanuka
Peer Reviewers Invited
  • Funder
  • Fogarty International Center
PUBLISHED 17 Jul 2025
https://doi.org/10.12688/f1000research.165525.1
Research Article metrics AWAITING PEER REVIEW
Nourishing the Microbiome: Exploring the influence of Food Inflammatory Index on Gut Bacteria in Type 2 Diabetics in Saudi Arabia
[version 1; peer review: awaiting peer review]
Afnan F. Almuhanna, Rudaynah Alali, Abdulmohsen H. Al Eleq, Waleed I. Albaker, Fatima A. Alrubaish, Jana M. alsaif, Chittibabu Vatte, Cyril Cyrus, Bao-Li Loza, Raed M Alsulaiman, Abdulaziz Al-Qurain, Fahad A. Al-Muhanna, Brendan Keating, Amein Al-ali, Alawi Habara
Peer Reviewers Invited
  • Funders
  • King Abdulaziz City for Science and Technology grants .
  • Rawabi Scientific Chair for Regenerative & Precision Medicine, Imam Abdulrahman Bin Faisal University, Dammam
PUBLISHED 15 Jul 2025
https://doi.org/10.12688/f1000research.151954.2
Research Article metrics
Revised
Absent in Melanoma 2 Gene Associated Periodontitis and Coronary Heart Disease
[version 2; peer review: 1 approved, 1 approved with reservations]
Zina Ali Daily, Batool Hassan Al-Ghurabi
Peer Reviewers Athraa Ali Mahmood; Paras Ahmad
LATEST VERSION PUBLISHED 14 Jul 2025
https://doi.org/10.12688/f1000research.163833.1
Software Tool Article metrics
LitSieve: An integrated literature search and triage tool for biocuration
[version 1; peer review: 1 approved with reservations]
Matt Jeffryes, Melissa Harrison, Henning Hermjakob, Johanna McEntyre
Peer Reviewers Kim Rutherford
  • Funders
  • European Molecular Biology Laboratory
  • HORIZON EUROPE Marie Sklodowska-Curie Actions
PUBLISHED 11 Jul 2025
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