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https://doi.org/10.12688/f1000research.5564.1
Opinion Article metrics
Collaboration for rare disease drug discovery research
[version 1; peer review: 2 approved]
Nadia K. Litterman, Michele Rhee, David C. Swinney, Sean Ekins
Peer Reviewers Nicholas Meanwell; Stephen Groft
PUBLISHED 31 Oct 2014
https://doi.org/10.12688/f1000research.5625.1
Correspondence metrics
Hot topics at the intersection of aging and energetics: Diabetes/insulin resistance, Sirtuins, and the Microbiome
[version 1; peer review: 3 approved]
Dudley W. Lamming
Peer Reviewers David Lombard; Holly M. Brown-Borg; Monica Driscoll
PUBLISHED 28 Oct 2014
https://doi.org/10.12688/f1000research.5486.1
Software Tool Article metrics
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
[version 1; peer review: 2 approved, 1 approved with reservations]
Andrew C. R. Martin
Peer Reviewers Christoph Gille; David Martin; Robert Paul Davey
PUBLISHED 23 Oct 2014
https://doi.org/10.12688/f1000research.5499.1
Software Tool Article metrics
Visualisation of BioPAX Networks using BioLayout Express3D
[version 1; peer review: 2 approved]
Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Peer Reviewers Gary D Bader; Jianguo Xia
PUBLISHED 20 Oct 2014
https://doi.org/10.12688/f1000research.5412.1
Software Tool Article metrics
Niche Genetic Algorithms are better than traditional Genetic Algorithms for de novo Protein Folding
[version 1; peer review: 2 not approved]
Michael Scott Brown, Tommy Bennett, James A. Coker
Peer Reviewers Nathan Alexander; Kenneth De Jong
PUBLISHED 07 Oct 2014
https://doi.org/10.12688/f1000research.5426.1
Correspondence metrics
Activity artifacts in drug discovery and different facets of compound promiscuity
[version 1; peer review: 3 approved]
Jürgen Bajorath
Peer Reviewers John A. Lowe III; Bill Greenlee; Peter R Bernstein
PUBLISHED 03 Oct 2014
https://doi.org/10.12688/f1000research.4711.2
Correspondence metrics
Revised
Non-human lnc-DC orthologs encode Wdnm1-like protein
[version 2; peer review: 3 approved]
Johannes M. Dijkstra, Keith T. Ballingall
Peer Reviewers Cynthia Smas and Gang Ren; Julja Burchard; Miki Nakao
LATEST VERSION PUBLISHED 30 Sep 2014
https://doi.org/10.12688/f1000research.4431.2
Software Tool Article metrics
Revised
ReactomeFIViz: a Cytoscape app for pathway and network-based data analysis
[version 2; peer review: 2 approved]
Guanming Wu, Eric Dawson, Adrian Duong, Robin Haw, Lincoln Stein
Peer Reviewers Hamid Bolouri; Nikolaus Schultz and B. Arman Aksoy
LATEST VERSION PUBLISHED 12 Sep 2014
https://doi.org/10.12688/f1000research.4254.2
Software Tool Article metrics
Revised
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization
[version 2; peer review: 2 approved]
Martina Kutmon, Samad Lotia, Chris T. Evelo, Alexander R Pico
Peer Reviewers Christian A Grove; Ted Goldstein
LATEST VERSION PUBLISHED 11 Sep 2014
https://doi.org/10.12688/f1000research.4492.2
Software Tool Article metrics
Revised
Cytoscape: the network visualization tool for GenomeSpace workflows
[version 2; peer review: 3 approved]
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Peer Reviewers Aris Floratos; Gabriela Bindea and Bernhard Mlecnik; Jan Aerts
LATEST VERSION PUBLISHED 26 Aug 2014
https://doi.org/10.12688/f1000research.4702.1
Software Tool Article metrics
EpiCollect+: linking smartphones to web applications for complex data collection projects
[version 1; peer review: 2 approved]
David M. Aanensen, Derek M. Huntley, Mirko Menegazzo, Chris I. Powell, Brian G. Spratt
Peer Reviewers Daniel Lombraña González; Jason E. Stajich
PUBLISHED 20 Aug 2014
https://doi.org/10.12688/f1000research.4410.2
Software Tool Article metrics
Revised
CyKEGGParser: tailoring KEGG pathways to fit into systems biology analysis workflows
[version 2; peer review: 2 approved]
Lilit Nersisyan, Ruben Samsonyan, Arsen Arakelyan
Peer Reviewers Hans Binder; Augustin Luna
LATEST VERSION PUBLISHED 14 Aug 2014
https://doi.org/10.12688/f1000research.4996.1
Research Article metrics
SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
[version 1; peer review: 2 approved]
Jennifer Wyffels, Benjamin L. King, James Vincent, Chuming Chen, Cathy H. Wu, Shawn W. Polson
Peer Reviewers Kevin Feldheim; Ed Heist
PUBLISHED 12 Aug 2014
https://doi.org/10.12688/f1000research.4831.1
Software Tool Article metrics
FALCON: a software package for analysis of nestedness in bipartite networks
[version 1; peer review: 2 approved]
Stephen J. Beckett, Chris A. Boulton, Hywel T. P. Williams
Peer Reviewers C. Patrick Doncaster; Justin R. Meyer
PUBLISHED 06 Aug 2014
https://doi.org/10.12688/f1000research.3681.2
Method Article metrics
Revised
Developing sustainable software solutions for bioinformatics by the “Butterfly” paradigm
[version 2; peer review: 2 approved]
Zeeshan Ahmed, Saman Zeeshan, Thomas Dandekar
Peer Reviewers Paul Vauterin; Wolfgang Mueller
LATEST VERSION PUBLISHED 01 Aug 2014
https://doi.org/10.12688/f1000research.4572.1
Software Tool Article metrics
GeneMANIA: Fast gene network construction and function prediction for Cytoscape
[version 1; peer review: 2 approved]
Jason Montojo, Khalid Zuberi, Harold Rodriguez, Gary D. Bader, Quaid Morris
Peer Reviewers Giovanni Scardoni; Rosalba Giugno
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4521.1
Software Tool Article metrics
BridgeDb app: unifying identifier mapping services for Cytoscape
[version 1; peer review: 2 approved]
Jianjiong Gao, Chao Zhang, Martijn van Iersel, Li Zhang, Dong Xu, Nikolaus Schultz, Alexander R. Pico
Peer Reviewers Benno Schwikowski; Olivier Elemento
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4524.1
Software Tool Article metrics
KEGGscape: a Cytoscape app for pathway data integration
[version 1; peer review: 1 approved, 2 approved with reservations]
Kozo Nishida, Keiichiro Ono, Shigehiko Kanaya, Koichi Takahashi
Peer Reviewers Matthew DeJongh; Egon Willighagen; Melissa Cline
  • Funder
  • Japan Science and Technology Agency
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4573.1
Software Tool Article metrics
Development and use of the Cytoscape app GFD-Net for measuring semantic dissimilarity of gene networks
[version 1; peer review: 2 approved]
Juan J. Diaz-Montana, Norberto Diaz-Diaz
Peer Reviewers Cristina Rubino Escudero; Alexander Pico
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4536.1
Software Tool Article metrics
Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results
[version 1; peer review: 2 approved]
Ruth Isserlin, Daniele Merico, Veronique Voisin, Gary D. Bader
Peer Reviewers Nathan Salomonis; Florian Markowetz
PUBLISHED 01 Jul 2014
581-600 of 631 ARTICLES
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