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https://doi.org/10.12688/f1000research.6616.1
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Highlights of the 1st Student Symposium of the ISCB RSG UK
[version 1; peer review: not peer reviewed]
Farzana Rahman, Rohit Farmer, Sayoni Das, Fatima Vayani, Mehedi Hassan
PUBLISHED 16 Jun 2015
https://doi.org/10.12688/f1000research.6536.1
Research Article metrics
A reanalysis of mouse ENCODE comparative gene expression data
[version 1; peer review: 3 approved, 1 approved with reservations]
Yoav Gilad, Orna Mizrahi-Man
Peer Reviewers Rafael A. Irizarry; Michael B. Eisen; Mick Watson; Lior Pachter
PUBLISHED 19 May 2015
https://doi.org/10.12688/f1000research.6392.1
Research Article metrics
A bioinformatics insight to rhizobial globins: gene identification and mapping, polypeptide sequence and phenetic analysis, and protein modeling.
[version 1; peer review: 2 approved]
Reinier Gesto-Borroto, Miriam Sánchez-Sánchez, Raúl Arredondo-Peter
Peer Reviewers Manuel Becana; Paul Twigg
PUBLISHED 13 May 2015
https://doi.org/10.12688/f1000research.6354.1
Software Tool Article metrics
AGRIS: providing access to agricultural research data exploiting open data on the web
[version 1; peer review: 2 approved]
Fabrizio Celli, Thembani Malapela, Karna Wegner, Imma Subirats, Elena Kokoliou, Johannes Keizer
Peer Reviewers Laura Privalle; Robert Paul Davey
PUBLISHED 08 May 2015
https://doi.org/10.12688/f1000research.5813.1
Method Article metrics
Parallel DNA polymerase chain reaction: Synthesis of two different PCR products from a DNA template
[version 1; peer review: 2 approved]
Vikash Bhardwaj, Kulbhushan Sharma
Peer Reviewers Harishkumar Madhyastha; Ram Gopal
PUBLISHED 31 Dec 2014
https://doi.org/10.12688/f1000research.3818.2
Research Article metrics
Revised
Systems analysis of the prostate tumor suppressor NKX3.1 supports roles in DNA repair and luminal cell differentiation
[version 2; peer review: 2 approved]
Chih-Cheng Yang, Alicia Chung, Chia-Yu Ku, Laurence M. Brill, Roy Williams, Dieter A. Wolf
Peer Reviewers Kemal S. Korkmaz; Philip D. Anderson
LATEST VERSION PUBLISHED 18 Dec 2014
https://doi.org/10.12688/f1000research.5753.1
Software Tool Article metrics
Selecting relevant nodes and structures in biological networks. BiNAT: a new plugin for Cytoscape
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Fabio Cumbo, Giovanni Felici, Paola Bertolazzi
Peer Reviewers Emidio Capriotti; Hagen Blankenburg; Vivek Anantharaman
PUBLISHED 21 Nov 2014
https://doi.org/10.12688/f1000research.5564.1
Opinion Article metrics
Collaboration for rare disease drug discovery research
[version 1; peer review: 2 approved]
Nadia K. Litterman, Michele Rhee, David C. Swinney, Sean Ekins
Peer Reviewers Nicholas Meanwell; Stephen Groft
PUBLISHED 31 Oct 2014
https://doi.org/10.12688/f1000research.5625.1
Correspondence metrics
Hot topics at the intersection of aging and energetics: Diabetes/insulin resistance, Sirtuins, and the Microbiome
[version 1; peer review: 3 approved]
Dudley W. Lamming
Peer Reviewers David Lombard; Holly M. Brown-Borg; Monica Driscoll
PUBLISHED 28 Oct 2014
https://doi.org/10.12688/f1000research.5486.1
Software Tool Article metrics
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
[version 1; peer review: 2 approved, 1 approved with reservations]
Andrew C. R. Martin
Peer Reviewers Christoph Gille; David Martin; Robert Paul Davey
PUBLISHED 23 Oct 2014
https://doi.org/10.12688/f1000research.5499.1
Software Tool Article metrics
Visualisation of BioPAX Networks using BioLayout Express3D
[version 1; peer review: 2 approved]
Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Peer Reviewers Gary D Bader; Jianguo Xia
PUBLISHED 20 Oct 2014
https://doi.org/10.12688/f1000research.5412.1
Software Tool Article metrics
Niche Genetic Algorithms are better than traditional Genetic Algorithms for de novo Protein Folding
[version 1; peer review: 2 not approved]
Michael Scott Brown, Tommy Bennett, James A. Coker
Peer Reviewers Nathan Alexander; Kenneth De Jong
PUBLISHED 07 Oct 2014
https://doi.org/10.12688/f1000research.5426.1
Correspondence metrics
Activity artifacts in drug discovery and different facets of compound promiscuity
[version 1; peer review: 3 approved]
Jürgen Bajorath
Peer Reviewers John A. Lowe III; Bill Greenlee; Peter R Bernstein
PUBLISHED 03 Oct 2014
https://doi.org/10.12688/f1000research.4711.2
Correspondence metrics
Revised
Non-human lnc-DC orthologs encode Wdnm1-like protein
[version 2; peer review: 3 approved]
Johannes M. Dijkstra, Keith T. Ballingall
Peer Reviewers Cynthia Smas and Gang Ren; Julja Burchard; Miki Nakao
LATEST VERSION PUBLISHED 30 Sep 2014
https://doi.org/10.12688/f1000research.4431.2
Software Tool Article metrics
Revised
ReactomeFIViz: a Cytoscape app for pathway and network-based data analysis
[version 2; peer review: 2 approved]
Guanming Wu, Eric Dawson, Adrian Duong, Robin Haw, Lincoln Stein
Peer Reviewers Hamid Bolouri; Nikolaus Schultz and B. Arman Aksoy
LATEST VERSION PUBLISHED 12 Sep 2014
https://doi.org/10.12688/f1000research.4254.2
Software Tool Article metrics
Revised
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization
[version 2; peer review: 2 approved]
Martina Kutmon, Samad Lotia, Chris T. Evelo, Alexander R Pico
Peer Reviewers Christian A Grove; Ted Goldstein
LATEST VERSION PUBLISHED 11 Sep 2014
https://doi.org/10.12688/f1000research.4492.2
Software Tool Article metrics
Revised
Cytoscape: the network visualization tool for GenomeSpace workflows
[version 2; peer review: 3 approved]
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Peer Reviewers Aris Floratos; Gabriela Bindea and Bernhard Mlecnik; Jan Aerts
LATEST VERSION PUBLISHED 26 Aug 2014
https://doi.org/10.12688/f1000research.4702.1
Software Tool Article metrics
EpiCollect+: linking smartphones to web applications for complex data collection projects
[version 1; peer review: 2 approved]
David M. Aanensen, Derek M. Huntley, Mirko Menegazzo, Chris I. Powell, Brian G. Spratt
Peer Reviewers Daniel Lombraña González; Jason E. Stajich
PUBLISHED 20 Aug 2014
https://doi.org/10.12688/f1000research.4410.2
Software Tool Article metrics
Revised
CyKEGGParser: tailoring KEGG pathways to fit into systems biology analysis workflows
[version 2; peer review: 2 approved]
Lilit Nersisyan, Ruben Samsonyan, Arsen Arakelyan
Peer Reviewers Hans Binder; Augustin Luna
LATEST VERSION PUBLISHED 14 Aug 2014
https://doi.org/10.12688/f1000research.4996.1
Research Article metrics
SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
[version 1; peer review: 2 approved]
Jennifer Wyffels, Benjamin L. King, James Vincent, Chuming Chen, Cathy H. Wu, Shawn W. Polson
Peer Reviewers Kevin Feldheim; Ed Heist
PUBLISHED 12 Aug 2014
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