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https://doi.org/10.12688/f1000research.129250.3
Research Article metrics
Revised
Goji berry (Lycium barbarum) inhibits the proliferation, adhesion, and migration of oral cancer cells by inhibiting the ERK, AKT, and CyclinD cell signaling pathways: an in-vitro study
[version 3; peer review: 2 approved]
Amee Sanghavi, Ananth Srivatsa, Divya Adiga, Aditi Chopra, Richard Lobo, Shama Prasada Kabekkodu, Shivaprasada Gadag, Usha Nayak, Karthik Sivaraman, Ashmeet Shah
Peer Reviewers Swagat Ray; Poornima Rajendran
  • Funder
  • Indian Council of Medical Research
LATEST VERSION PUBLISHED 01 Mar 2023
https://doi.org/10.12688/f1000research.128941.1
Research Article metrics
Phytochemicals, proximate composition, minerals and volatile oil analysis of Zanthoxylum acanthopodium DC. fruits
[version 1; peer review: 1 not approved]
Denny Satria, Aminah Dalimunthe, Dewi Pertiwi, Mahatir Muhammad, Vera Estefania Kaban, Nasri Nasri, Syukur Berkat Waruwu
Peer Reviewers Fiaz Alam
  • Funder
  • Ministry of Education, Culture, Research and Technology Republic of Indonesia
PUBLISHED 01 Mar 2023
https://doi.org/10.12688/f1000research.18656.3
Data Note metrics
Revised
On the design of linked datasets mapping networks of collaboration in the genomic sequencing of Saccharomyces cerevisiae, Homo sapiens, and Sus scrofa
[version 3; peer review: 2 approved]
Mark Wong, Rhodri Leng
Peer Reviewers Rachel Ankeny; Jake Lever
  • Funder
  • European Research Council
LATEST VERSION PUBLISHED 28 Feb 2023
https://doi.org/10.12688/f1000research.128091.2
Software Tool Article metrics
Revised
SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes
[version 2; peer review: 2 approved]
Nachida Tadrent, Franck Dedeine, Vincent Hervé
Peer Reviewers Célio Dias Santos Júnior; Aram Mikaelyan
  • Funders
  • Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
  • Université de Tours
  • Centre National de la Recherche Scientifique
  • European Regional Development Fund
LATEST VERSION PUBLISHED 27 Feb 2023
https://doi.org/10.12688/f1000research.122161.2
Method Article metrics
Revised
Diagnostic accuracy for a plasma SARS-CoV-2 Nucleocapsid Protein method
[version 2; peer review: 1 approved, 1 approved with reservations]
Søren Kristiansen, Laura Emilie Schmidt, Ann-Britt Nygaard Hillig, Thyge Lynghøj Nielsen, Thomas Ingemann Pedersen, Nikolai Søren Kirkby, Thomas Schiøler, Thore Hillig
Peer Reviewers Mohammad M. Sajadi and Zahra Rikhtegaran Tehrani; Nora Pisanic
LATEST VERSION PUBLISHED 22 Feb 2023
https://doi.org/10.12688/f1000research.109136.2
Research Article metrics
Revised
Genomic profiles of Indonesian colorectal cancer patients
[version 2; peer review: 2 approved]
Murdani Abdullah, Sofy Meilany, Hidayat Trimarsanto, Safarina G. Malik, Ninik Sukartini, Firhat Idrus, Saskia A. Nursyirwan, Virly N. Muzellina, Rabbinu R. Pribadi, Amanda P. Utari, Hasan Maulahela, Ari F. Syam
Peer Reviewers Ahmad Rusdan Handoyo Utomo; Wei Zhang
  • Funder
  • Indonesian Ministry of Research, Technology, and Higher Education through the World Class Research (WCR) 2019 Program
LATEST VERSION PUBLISHED 21 Feb 2023
https://doi.org/10.12688/f1000research.130615.1
Research Article metrics
Genome-wide comparisons reveal broad variations in intraspecific SNP frequencies among species in Agaricomycetes, Basidiomycota
[version 1; peer review: 1 approved]
Kuan Zhao, Jianping Xu
Peer Reviewers Alexandra Dallaire
  • Funders
  • Natural Science Foundation of Jiangxi Province, China
  • Natural Sciences and Engineering Research Council of Canada
  • National Natural Science Foundation of China
PUBLISHED 20 Feb 2023
https://doi.org/10.12688/f1000research.128074.2
Research Article metrics
Revised
Entry of the antipsychotic drug, olanzapine, into the developing rat brain in mono- and combination therapies
[version 2; peer review: 2 approved]
Yifan Huang, Fiona Qiu, Mark Habgood, Shuai Nie, Katarzyna Dziegielewska, Norman Saunders
Peer Reviewers Byron Bitanihirwe; Udo Schumacher
LATEST VERSION PUBLISHED 20 Feb 2023
https://doi.org/10.12688/f1000research.129413.1
Genome Note metrics
The complete mitochondrial genome of the hybrid snow crab Chionoecetes opilio (♀) × C. japonicus (♂) (Crustacea: Decapoda: Majoidea) and its phylogenetic analysis
[version 1; peer review: 1 approved, 1 approved with reservations]
Bong Han Yun, Yong Hwi Kim, Ho-Seop Han, Hye Jin Kim, Jong Yeon Park, In-Chul Bang
Peer Reviewers Jongwoo Jung; Christopher M Austin
  • Funders
  • Soonchunhyang University
  • Ministry of Oceans and Fisheries
PUBLISHED 20 Feb 2023
https://doi.org/10.12688/f1000research.129161.1
Software Tool Article metrics
AMAW: automated gene annotation for non-model eukaryotic genomes
[version 1; peer review: 3 approved with reservations, 1 not approved]
Loïc Meunier, Denis Baurain, Luc Cornet
Peer Reviewers B. Franz Lang; Guifré Torruella; James Titus-McQuillan; Laura Ruiz Torres and Bruno Contreras-Moreira
  • Funders
  • BELSPO
  • F.R.S.-FNRS
PUBLISHED 16 Feb 2023
https://doi.org/10.12688/f1000research.108913.2
Research Article metrics
Revised
Sustainability of mangrove forest management in the former bauxite mining area on Bintan Island
[version 2; peer review: 1 approved, 1 approved with reservations]
Diana Azizah, Rasoel Hamidy, . Mubarak, . Efriyeldi, Tengku Said Raza’i, Wahyu Muzammil, Hilfi Pardi
Peer Reviewers Nuddin Harahab; Suci Puspita Sari
LATEST VERSION PUBLISHED 16 Feb 2023
https://doi.org/10.12688/f1000research.26464.2
Research Article metrics
Revised
First report on molecular identification of Fusarium species causing fruit rot of mandarin (Citrus reticulata) in Bangladesh
[version 2; peer review: 2 approved]
Mohammed Faruk Hasan, Mohammed Asadul Islam, Biswanath Sikdar
Peer Reviewers Shuvra Kanti Dey; Barbara Sawicka
  • Funder
  • Ministry of Science and Technology, Government of the People’s Republic of Bangladesh
LATEST VERSION PUBLISHED 15 Feb 2023
https://doi.org/10.12688/f1000research.129475.1
Research Article metrics
Pesticide use behavior, cognitive impairment and the model of safety standard of pesticide use among farmworkers in Indonesia
[version 1; peer review: 1 approved with reservations, 1 not approved]
Isa Ma'rufi, Erwin Nur Rif’ah, Syubbanul Wathon, Khaidar Ali
Peer Reviewers Donald Cole; Rajesh Singh Yadav
  • Funder
  • The University of Jember
PUBLISHED 14 Feb 2023
https://doi.org/10.12688/f1000research.128982.1
Software Tool Article metrics
Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)
[version 1; peer review: 2 approved]
Yuda Munarko, Anand Rampadarath, David Nickerson
Peer Reviewers Socrates Dokos; Garima Malik
  • Funders
  • National Institutes of Health
  • Aotearoa Foundation
  • Auckland Bioengineering Institute
PUBLISHED 10 Feb 2023
https://doi.org/10.12688/f1000research.130105.1
Research Article metrics
Determination of pharmacological activity of bioactives in Allium sativum using computational analysis
[version 1; peer review: 2 approved with reservations]
Stephen Ouma, Richard Kagia, Faith Kamakia
Peer Reviewers Rahadian Zainul; Sandeep Kumar
PUBLISHED 09 Feb 2023
https://doi.org/10.12688/f1000research.130518.1
Research Article metrics
Identification of binding sites in nicastrin and binding modes of its inhibitors
[version 1; peer review: 1 approved, 1 approved with reservations]
Ngceboyakwethu P Zinyama, Upenyu Guyo, Grace Mugumbate
Peer Reviewers Guanghui Yang; Peter Mbugua Njogu
  • Funder
  • Midlands State University Research and Innovation Division
PUBLISHED 09 Feb 2023
https://doi.org/10.12688/f1000research.126840.2
Software Tool Article metrics
Revised
Gene expression data visualization tool on the o²S²PARC platform
[version 2; peer review: 2 approved]
Hiba Ben Aribi, Mengyuan Ding, Anmol Kiran
Peer Reviewers Joost B. M. Wagenaar; Esra Neufeld
LATEST VERSION PUBLISHED 06 Feb 2023
https://doi.org/10.12688/f1000research.129490.1
Research Article metrics
Toblerone: detecting exon deletion events in cancer using RNA-seq
[version 1; peer review: 2 approved]
Andrew Lonsdale, Andreas Halman, Lauren Brown, Hansen Kosasih, Paul Ekert, Alicia Oshlack
Peer Reviewers Katherine Pillman; Matt Field
  • Funder
  • National Health and Medical Research Council
PUBLISHED 03 Feb 2023
https://doi.org/10.12688/f1000research.73697.2
Research Article metrics
Revised
Antioxidant effect of ethanolic extract of Pleurotus Ostreatus on 4-hydroxy-2-nonenal (HNE) and glutathione (GSH) level in lung rats exposed to cigarette smoke
[version 2; peer review: 1 approved with reservations, 1 not approved]
Santun Bhekti Rahimah, Arto Yuwono Soeroto, Diah Dhianawaty Djunaedi, Tatang Bisri
Peer Reviewers Ali Akbar Nekooeian; Arumugam Vijaya Anand
  • Funder
  • Lembaga Pengelola Dana Pendidikan
LATEST VERSION PUBLISHED 02 Feb 2023
https://doi.org/10.12688/f1000research.126829.1
Systematic Review metrics
Genome-wide association studies (GWAS) for orthopedic diseases: a systematic review
[version 1; peer review: 1 approved with reservations, 1 not approved]
Mir Sadat-Ali
Peer Reviewers Mehdi Momen; Serra Kaya
PUBLISHED 30 Jan 2023
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