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https://doi.org/10.12688/f1000research.131768.3
Study Protocol metrics
Revised
A protocol for cloning, expression, and purification of Lysine exporter (LysE) gene of Mycobacterium tuberculosis
[version 3; peer review: 2 approved]
Shilpa Upadhyay, Archana Dhok, Vinod Agarkar, Supriya Kashikar, Zahiruddin Syed Quazi
Peer Reviewers Seamus J. Martin and Seren Hamsici; Dr. Rahul Sharma
LATEST VERSION PUBLISHED 05 Feb 2024
https://doi.org/10.12688/f1000research.135250.2
Software Tool Article metrics
Revised
DrosOMA: the Drosophila Orthologous Matrix browser
[version 2; peer review: 4 approved]
Antonin Thiébaut, Adrian M. Altenhoff, Giulia Campli, Natasha Glover, Christophe Dessimoz, Robert M. Waterhouse
Peer Reviewers Berend Snel; Daofeng Li; Jung-Wan Mok; Elise Parey
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 16 Jan 2024
https://doi.org/10.12688/f1000research.142429.1
Research Article metrics
Identification of pathogenic-specific open reading frames in staphylococci species
[version 1; peer review: 2 not approved]
Fatima Naser Farhan, Andrzej Zielezinski, Wojciech M Karłowski
Peer Reviewers Gisela Storz; Vishnu Raghuram
PUBLISHED 08 Jan 2024
https://doi.org/10.12688/f1000research.55349.1
Case Report metrics RETRACTED
RETRACTED:  Case Report: A newborn in western Nepal with Harlequin ichthyosis
[version 1; peer review: awaiting peer review]
Prabhat Singh Rajput, Santosh Basnet, Pradip kumar Paudel, Bibek Devkota, Ram Jiban Prasad, Kapil Amgain
PUBLISHED 29 Dec 2023
https://doi.org/10.12688/f1000research.134978.3
Research Article metrics
Revised
Stenotrophomonas goyi sp. nov., a novel bacterium associated with the alga Chlamydomonas reinhardtii
[version 3; peer review: 2 approved]
María Jesus Torres, Neda Fakhimi, Alexandra Dubini, David González-Ballester
Peer Reviewers Rosa Leon-Bañares; Gergely Maroti
  • Funders
  • Maria Zambrano
  • the Spanish Ministerio de Ciencia e Innovación
  • MCIN/AEI/10.13039/501100011033
  • NextGenerationEU/PRTR program
  • Plan Propio of University of Córdoba
  • UCO-FEDER
  • European ERANETMED
LATEST VERSION PUBLISHED 14 Dec 2023
https://doi.org/10.12688/f1000research.136362.1
Research Article metrics AWAITING PEER REVIEW
Low prevalence of germline TP53 and PALB2 mutations in unselected cohort of breast cancer patients from Brunei Darussalam
[version 1; peer review: awaiting peer review]
Siti Nur Idayu Matusin, Zen Huat Lu, Mas Rina Wati Haji Abdul Hamid
Peer Reviewers Invited
  • Funder
  • Universiti Brunei Darussalam
PUBLISHED 30 Nov 2023
https://doi.org/10.12688/f1000research.130530.2
Software Tool Article metrics
Revised
scANANSE gene regulatory network and motif analysis of single-cell clusters
[version 2; peer review: 2 approved]
Jos G.A. Smits, Julian A. Arts, Siebren Frölich, Rebecca R. Snabel, Branco M.H. Heuts, Joost H.A. Martens, Simon J. van Heeringen, Huiqing Zhou
Peer Reviewers Kenji Kamimoto; Marouen Ben Guebila
  • Funders
  • NWO grant 016 Vidi
  • NWO-ALW
  • ZonMw Open
LATEST VERSION PUBLISHED 29 Nov 2023
https://doi.org/10.12688/f1000research.138571.2
Genome Note metrics
Revised
The genome sequence of the critically endangered Kroombit tinkerfrog (Taudactylus pleione)
[version 2; peer review: 3 approved]
Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg
Peer Reviewers Natalie Forsdick; Sandra Goutte; Matheus Azambuja
  • Funders
  • Australian Federal Government Bushfire Recovery Scheme
  • Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science
  • NCRIS supported Bioplatforms Australia Threatened Species Initiative
LATEST VERSION PUBLISHED 16 Nov 2023
https://doi.org/10.12688/f1000research.134078.2
Method Article metrics
Revised
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data
[version 2; peer review: 2 approved, 1 approved with reservations]
Jinming Cheng, Gordon K. Smyth, Yunshun Chen
Peer Reviewers Michael D Morgan; Koen Van den berge; Anna Alemany, Xuan Quy Nguyen and Noëlle Dommann
  • Funders
  • National Health and Medical Research Council
  • Chan Zuckerberg Initiative
  • Medical Research Future Fund
LATEST VERSION PUBLISHED 10 Nov 2023
https://doi.org/10.12688/f1000research.133789.1
Research Article metrics
Butterfly eyespots exhibit unique patterns of open chromatin
[version 1; peer review: 2 approved]
Suriya Narayanan Murugesan, Antónia Monteiro
Peer Reviewers Richard ffrench-Constant; Craig Brunetti
  • Funder
  • National Research Foundation Singapore
PUBLISHED 31 Oct 2023
https://doi.org/10.12688/f1000research.130752.2
Review metrics
Revised
Anemonefishes: A model system for evolutionary genomics
[version 2; peer review: 2 approved]
Marcela Herrera, Timothy Ravasi, Vincent Laudet
Peer Reviewers Fabio Cortesi; Kerstin Johannesson
  • Funders
  • Okinawa Institute of Science and Technology Graduate University
  • Academia Sinica
LATEST VERSION PUBLISHED 27 Oct 2023
https://doi.org/10.12688/f1000research.122019.2
Research Article metrics
Revised
Observation of SARS-CoV-2 genome characteristics and clinical manifestations within eight family clusters from GH and GK clades in Jakarta, Indonesia
[version 2; peer review: 2 approved with reservations, 2 not approved]
Fera Ibrahim, Augustine Natasha, Andi Yasmon, Fithriyah Fithriyah, Anis Karuniawati, Rivia Gina Rahmawaty, Yulia Saharman, Pratiwi Sudarmono
Peer Reviewers So Nakagawa; Serafeim C. Chaintoutis; Pakorn Aiewsakun; Gusti N Mahardika
  • Funder
  • Direktorat Riset and Pengembangan, Universitas Indonesia
LATEST VERSION PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.136986.1
Software Tool Article metrics
CIViCutils: Matching and downstream processing of clinical annotations from CIViC
[version 1; peer review: 4 approved with reservations]
María L. Rosano-Gonzalez, Vipin T. Sreedharan, Antoine Hanns, Daniel J. Stekhoven, Franziska Singer
Peer Reviewers Kandarp Joshi; Sayed-Rzgar Hosseini; Obi L. Griffith; Marco Punta and Aurora Maurizio
PUBLISHED 11 Oct 2023
https://doi.org/10.12688/f1000research.140649.1
Review metrics
Tapping into the plasticity of plant architecture for increased stress resilience
[version 1; peer review: 2 approved, 1 approved with reservations]
Maryam Rahmati Ishka, Magdalena Julkowska
Peer Reviewers Rumyana Karlova; Adriana Garay Arroyo; Sadikshya Poudel
PUBLISHED 02 Oct 2023
https://doi.org/10.12688/f1000research.23805.2
Brief Report metrics
Revised
Analyses of spike protein from first deposited sequences of SARS-CoV2 from West Bengal, India
[version 2; peer review: 2 approved, 1 approved with reservations]
Feroza Begum, Debica Mukherjee, Dluya Thagriki, Sandeepan Das, Prem Prakash Tripathi, Arup Kumar Banerjee, Upasana Ray
Peer Reviewers Pawan Kumar Maurya; Jalaj Gupta; Nicolas Cuburu
LATEST VERSION PUBLISHED 27 Sep 2023
https://doi.org/10.12688/f1000research.136385.1
Research Article metrics
Shark and ray genome size estimation: methodological optimization for inclusive and controllable biodiversity genomics
[version 1; peer review: 1 approved, 1 approved with reservations]
Mitsutaka Kadota, Kaori Tatsumi, Kazuaki Yamaguchi, Atsuko Yamaguchi, Takashi Asahida, Keiichi Sato, Tatsuya Sakamoto, Yoshinobu Uno, Shigehiro Kuraku
Peer Reviewers Jochen Wilhelm; Nancy Saavedra-Sotelo
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • National Institute of Genetics, Japan
  • Ministry of Education, Culture, Sports, Science and Technology, Japan
PUBLISHED 25 Sep 2023
https://doi.org/10.12688/f1000research.127937.2
Genome Note metrics
Revised
Characterization of the Complete Chloroplast Genome of Gaultheria nummularioides D.Don 1825 (Ericaceae)
[version 2; peer review: 2 approved]
Xiao-Juan Cheng, Yan-Ling Xu, Catherine M. Bush, Yan-Jun Lin, Xin-Yu Du, Lu Lu
Peer Reviewers Xing Huang; Hoang Dang Khoa Do
  • Funders
  • Program Innovative Research Team in Science and Technology in Yunnan Province
  • National Natural Science Foundation of China
  • Scientific Research Fund Project of Yunnan Education Department
LATEST VERSION PUBLISHED 04 Sep 2023
https://doi.org/10.12688/f1000research.128320.3
Research Article metrics
Revised
Concatenated 16S rRNA sequence analysis improves bacterial taxonomy
[version 3; peer review: 2 approved]
Bobby Paul
Peer Reviewers Siddaramappa Shivakumara; Wellyzar Sjamsuridzal
  • Funder
  • Manipal Academy of Higher Education
LATEST VERSION PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.138618.1
Research Article metrics AWAITING PEER REVIEW
Choice of bead-beater instrument can result in significant differences in the outcome of host-associated microbiome studies
[version 1; peer review: awaiting peer review]
Ashvini Chauhan, Christian Chukwujindu, Ashish Pathak
Peer Reviewers Invited
  • Funders
  • Department of Energy Minority Serving Institution Partnership Program (MSIPP)
  • Department of Defense
  • National Energy Technology Laboratory
  • National Science Foundation
PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.135174.1
Genome Note metrics
Complete mitochondrial genome and the phylogenetic position of a new Annelida species belonging to the genus Syllis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Jun Young Chae, JinHo Kim, Tae-Wook Kang, Jae il Lee, Hyung-Ho Lee, Moo-Sang Kim
Peer Reviewers Yingdong Li; Zhi Wang
  • Funder
  • National Research Foundation
PUBLISHED 31 Aug 2023
61-80 of 2,028 ARTICLES
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