All Research Articles

81-100 of 630 ARTICLES
https://doi.org/10.12688/f1000research.110903.2
Software Tool Article metrics
Revised
SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery
[version 2; peer review: 2 approved]
Peer Reviewers Jane Usher; Nishanth Ulhas Nair
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 22 Dec 2022
https://doi.org/10.12688/f1000research.128354.1
Method Article metrics
BOREALIS: an R/Bioconductor package to detect outlier methylation from bisulfite sequencing data
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Philipp Jurmeister and Maximilian Leitheiser; Vicente Yepez
  • Funder
  • Center for Individualized Medicine, Mayo Clinic
PUBLISHED 20 Dec 2022
https://doi.org/10.12688/f1000research.123384.2
Research Article metrics
Revised
In silico and in vitro analysis of THCA synthase gene in Moroccan Cannabis sativa, L
[version 2; peer review: 1 approved with reservations, 3 not approved]
Peer Reviewers Supaart Sirikantaramas; Noureddine Hamamouch; Narayanan Srividya; Yuanyuan Liu
  • Funders
  • Center for Scientific and Technical Research in Rabat
  • University Ibn Tofail
  • Genetics Analysis Institute of the Royal Gendarmerie of Morocco
LATEST VERSION PUBLISHED 15 Dec 2022
https://doi.org/10.12688/f1000research.74395.3
Research Article metrics
Revised
Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces
[version 3; peer review: 2 approved]
Peer Reviewers Andras Szilagyi; Pier Luigi Martelli
  • Funders
  • Associazione Italiana per la Ricerca sul Cancro
  • Germany Research Foundation
  • Italian Ministry of University and Research
  • Alexander von Humboldt-Stiftung
  • U.S. National Library of Medicine
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 12 Dec 2022
https://doi.org/10.12688/f1000research.128391.1
Research Article metrics
Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
[version 1; peer review: 2 not approved]
Peer Reviewers Aaron John Stevens; Sadaruddin Chachar
  • Funders
  • Arkansas State University
  • Arkansas Biosciences Institute
PUBLISHED 07 Dec 2022
https://doi.org/10.12688/f1000research.109027.2
Software Tool Article metrics
Revised
Exploring causal relationships in proteomic profiles in Cytoscape using the CausalPath App
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Ruth Isserlin; Katsuyuki Yugi
  • Funders
  • Google
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 14 Nov 2022
https://doi.org/10.12688/f1000research.73420.2
Software Tool Article metrics
Revised
PDBrt: A free database of complexes with measured drug-target residence time
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Wiesław Nowak; Marian Novotny
  • Funders
  • European Social Fund
  • Polish National Science Centre
  • Silesian University of Technology
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.124810.1
Software Tool Article metrics
abmAnimalMovement: An R package for simulating animal movement using an agent-based model
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Rocío Joo; Andrea Contina
  • Funder
  • Natural Environment Research Council
PUBLISHED 17 Oct 2022
https://doi.org/10.12688/f1000research.124160.1
Research Article metrics
Polypharmacological drug design opportunities against Parkinson's disease
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Giulio Rastelli; Yassir Boulaamane and Iman Touati
PUBLISHED 17 Oct 2022
https://doi.org/10.12688/f1000research.19426.2
Software Tool Article metrics
Revised
Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
[version 2; peer review: 2 approved]
Peer Reviewers Quan Nguyen; Marco Previtali and Luca Denti
  • Funders
  • National Heart Foundation of Australia
  • Amazon Web Services
  • National Health and Medical Research Council
  • Department of Education, Australian Governement
LATEST VERSION PUBLISHED 13 Oct 2022
https://doi.org/10.12688/f1000research.125381.1
Editorial metrics NOT PEER REVIEWED
Highlights of the 1st Ecuadorian-Venezuelan Symposium of Young Researchers in Bioinformatics (1SEVJIB)
[version 1; peer review: not peer reviewed]
PUBLISHED 22 Sep 2022
https://doi.org/10.12688/f1000research.125043.1
Editorial metrics NOT PEER REVIEWED
BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference
[version 1; peer review: not peer reviewed]
  • Funders
  • DBI-1265383
  • RM1 HG010860
  • R24 OD011883
  • DBI-0735191
  • DBI-1743442
PUBLISHED 12 Sep 2022
https://doi.org/10.12688/f1000research.108857.2
Research Article metrics
Revised
Diversity and antimicrobial activity of marine nudibranch associated bacteria against tropical human skin pathogens
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Yi Li; Cristóbal Espinosa-Ruiz
  • Funders
  • MSU Zoological Museum
  • The Research and Public Service Institution, Diponegoro University
  • IDB RAS basic research program
LATEST VERSION PUBLISHED 06 Sep 2022
https://doi.org/10.12688/f1000research.122811.1
Method Article metrics
A training curriculum for retrieving, structuring, and aggregating information derived from the biomedical literature and large-scale data repositories.
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Bartholomew N. Ondigo; Ekwaro A. Obuku
PUBLISHED 02 Sep 2022
https://doi.org/10.12688/f1000research.123904.1
Software Tool Article metrics
Peccary, a metaprogramming open-source R platform to improve pharmacometrics efficiency
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Elena Maria Tosca; Sergio Sánchez-Herrero
  • Funder
  • Servier
PUBLISHED 18 Aug 2022
https://doi.org/10.12688/f1000research.74846.2
Method Article metrics
Revised
Hobotnica: exploring molecular signature quality
[version 2; peer review: 2 approved]
Peer Reviewers Roberto Malinverni; Shailesh Tripathi
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • National Institutes of Health
LATEST VERSION PUBLISHED 16 Aug 2022
https://doi.org/10.12688/f1000research.51749.2
Method Article metrics
Revised
satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications
[version 2; peer review: 2 approved]
Peer Reviewers Marek Cmero; Alejandro Reyes
  • Funders
  • Belgian American Educational Foundation
  • Fonds Wetenschappelijk Onderzoek
LATEST VERSION PUBLISHED 08 Aug 2022
https://doi.org/10.12688/f1000research.52173.4
Software Tool Article metrics
Revised
target: an R package to predict combined function of transcription factors
[version 4; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Shulan Tian and Yan Huihuang; Mireia Ramos-Rodríguez
  • Funder
  • National Research Foundation of Korea
LATEST VERSION PUBLISHED 03 Aug 2022
https://doi.org/10.12688/f1000research.108804.2
Opinion Article metrics
Revised
Making European performance and impact assessment frameworks for research infrastructures glocal
[version 2; peer review: 2 approved]
Peer Reviewers Eugénio Campos Ferreira; Enrico Guarini and Marialuisa Lavitrano
  • Funders
  • ELIXIR
  • H2020 Research Infrastructures
  • Foundation for Science and Technology - Portugal
LATEST VERSION PUBLISHED 02 Aug 2022
https://doi.org/10.12688/f1000research.122312.1
Opinion Article metrics
Community-driven ELIXIR activities in single-cell omics
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Xiao-Yang Zhao; Feng Zhu
  • Funders
  • ELIXIR
  • Knut och Alice Wallenbergs Stiftelse
PUBLISHED 29 Jul 2022
81-100 of 630 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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