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https://doi.org/10.12688/f1000research.18236.1
Opinion Article metrics
BioHackathon 2015: Semantics of data for life sciences and reproducible research
[version 1; peer review: 2 approved]
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Peer Reviewers Jeremy G. Frey; James P. Balhoff and Gaurav Vaidya
  • Funder
  • National Bioscience Database Center, the Japan Science and Technology Agency (JST)
PUBLISHED 24 Feb 2020
https://doi.org/10.12688/f1000research.19740.1
Review metrics
Understanding transport processes in lichen, Azolla–cyanobacteria, ectomycorrhiza, endomycorrhiza, and rhizobia–legume symbiotic interactions
[version 1; peer review: 3 approved]
Rahul Roy, Anke Reinders, John M Ward, Tami R McDonald
Peer Reviewers Stefanie Wienkoop; Kendal Hirschi; Ulrike Mathesius
PUBLISHED 23 Jan 2020
https://doi.org/10.12688/f1000research.20498.2
Systematic Review metrics
Revised
Evidence-based Clinical Decision Support Systems for the prediction and detection of three disease states in critical care: A systematic literature review
[version 2; peer review: 2 approved]
Goran Medic, Melodi Kosaner Kließ, Louis Atallah, Jochen Weichert, Saswat Panda, Maarten Postma, Amer EL-Kerdi
Peer Reviewers Stavros Nikolakopoulos; Milena Kovacevic
  • Funder
  • Philips
LATEST VERSION PUBLISHED 27 Nov 2019
https://doi.org/10.12688/f1000research.20179.1
Review metrics
Recent advances in developing disease resistance in plants
[version 1; peer review: 2 approved]
Anuj Sharma, Jeffrey B. Jones, Frank F. White
Peer Reviewers Zuhua He; Magdy M Mahfouz
  • Funders
  • Gates Foundation
  • National Science Foundation
PUBLISHED 19 Nov 2019
https://doi.org/10.12688/f1000research.17714.1
Review metrics
Presurgical epilepsy evaluation and epilepsy surgery
[version 1; peer review: 2 approved]
Christoph Baumgartner, Johannes P. Koren, Martha Britto-Arias, Lea Zoche, Susanne Pirker
Peer Reviewers Daniel L Drane; Pieter van Mierlo
PUBLISHED 29 Oct 2019
https://doi.org/10.12688/f1000research.19721.1
Review metrics
Cardiac magnetic resonance imaging: the future is bright
[version 1; peer review: 2 approved]
Karthik Seetharam, Stamatios Lerakis
Peer Reviewers Jeroen J. Bax; Lauren A Baldassarre
PUBLISHED 13 Sep 2019
https://doi.org/10.12688/f1000research.20421.1
Research Article metrics
Optimal price-based control of heterogeneous thermostatically controlled loads under uncertainty using LSTM networks and genetic algorithms
[version 1; peer review: 2 approved with reservations, 1 not approved]
Taha Abdelhalim Nakabi, Pekka Toivanen
Peer Reviewers Matsukawa Shun; Chiou-Jye Huang; Shanti Swarup
  • Funder
  • Jenny ja Antti Wihurin Rahasto
PUBLISHED 10 Sep 2019
https://doi.org/10.12688/f1000research.18926.1
Review metrics
Evolving principles underlying neural lineage conversion and their relevance for biomedical translation
[version 1; peer review: 4 approved]
Lea Jessica Flitsch, Oliver Brüstle
Peer Reviewers Andrew Yoo; Kristin Baldwin; Jerome Mertens; Agnete Kirkeby
  • Funders
  • ERA-Net Neuron program
  • Bundesministerium für Bildung und Forschung
  • European Union
  • National Institutes of Health
PUBLISHED 30 Aug 2019
https://doi.org/10.12688/f1000research.19355.1
Review metrics
Recent advances in understanding and managing phantom limb pain
[version 1; peer review: 2 approved]
Andrea Aternali, Joel Katz
Peer Reviewers Tamar R Makin; Jack W Tsao
  • Funder
  • Canadian Research Chair in Health Psychology
PUBLISHED 23 Jul 2019
https://doi.org/10.12688/f1000research.17972.2
Review metrics
Revised
How ‘smart’ is smart dentistry?
[version 2; peer review: 2 approved]
Peter Kokol, Helena Blažun Vošner, Jernej Završnik, Marko Turčin
Peer Reviewers Wan Zaripah Wan Bakar and Huwaina Abd Ghani; Praveen Arany
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.17952.2
Method Article metrics
Revised
Updating the evidence on the effectiveness of the alcohol reduction app, Drink Less: using Bayes factors to analyse trial datasets supplemented with extended recruitment
[version 2; peer review: 2 approved]
Claire Garnett, Susan Michie, Robert West, Jamie Brown
Peer Reviewers Daniel Leightley; Nick Heather
  • Funders
  • Cancer Research UK
  • UK Centre for Tobacco and Alcohol Studies
  • National Institute for Health Research
  • Society for the Study of Addiction
LATEST VERSION PUBLISHED 15 Jul 2019
https://doi.org/10.12688/f1000research.17161.1
Review metrics
Emerging ideas and tools to study the emergent properties of the cortical neural circuits for voluntary motor control in non-human primates
[version 1; peer review: 4 approved]
John F. Kalaska
Peer Reviewers Steve Chase; John P Cunningham; Byron Yu; Hansjörg Scherberger
  • Funder
  • Canadian Institutes of Health Research
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.18187.1
Method Article metrics
FaceSync: Open source framework for recording facial expressions with head-mounted cameras
[version 1; peer review: 2 approved]
Jin Hyun Cheong, Sawyer Brooks, Luke J. Chang
Peer Reviewers Elliott Ross; Sylwia Hyniewska
PUBLISHED 21 May 2019
https://doi.org/10.12688/f1000research.17613.2
Research Article metrics
Revised
EEG correlation at a distance: A re-analysis of two studies using a machine learning approach
[version 2; peer review: 2 approved]
Marco Bilucaglia, Luciano Pederzoli, William Giroldini, Elena Prati, Patrizio E. Tressoldi
Peer Reviewers Arnaud Delorme; Schubert R. Carvalho
LATEST VERSION PUBLISHED 29 Mar 2019
https://doi.org/10.12688/f1000research.17207.1
Review metrics
Recent advances in gene function prediction using context-specific coexpression networks in plants
[version 1; peer review: 2 approved]
Chirag Gupta, Andy Pereira
Peer Reviewers Ross Sozzani and Natalie Clark; Marek Mutwil
  • Funder
  • National Science Foundation
PUBLISHED 05 Feb 2019
https://doi.org/10.12688/f1000research.15125.2
Data Note metrics
Revised
Head models of healthy and depressed adults for simulating the electric fields of non-invasive electric brain stimulation
[version 2; peer review: 2 approved]
Nya Mehnwolo Boayue, Gábor Csifcsák, Oula Puonti, Axel Thielscher, Matthias Mittner
Peer Reviewers Ilkka Laakso; Yu Huang
  • Funders
  • Helse Nord RHF
  • Universitetet i Tromsø
  • Lundbeckfonden
  • Novo Nordisk Fonden
LATEST VERSION PUBLISHED 15 Nov 2018
https://doi.org/10.12688/f1000research.16680.1
Software Tool Article metrics
ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations
[version 1; peer review: 1 approved, 2 approved with reservations]
Gaurav S. Kandlikar, Zachary J. Gold, Madeline C. Cowen, Rachel S. Meyer, Amanda C. Freise, Nathan J.B. Kraft, Jordan Moberg-Parker, Joshua Sprague, David J. Kushner, Emily E. Curd
Peer Reviewers Tristan Cordier; Holly M. Bik; Niklaus J. Grünwald and Zach Foster
  • Funders
  • University of California President’s Research Catalyst Awards
  • National Science Foundation
PUBLISHED 01 Nov 2018
https://doi.org/10.12688/f1000research.16453.1
Software Tool Article metrics
DataViz: visualization of high-dimensional data in virtual reality
[version 1; peer review: 1 not approved]
Eric Feng, Xijin Ge
Peer Reviewers David R. Glowacki and Michael O'Connor
  • Funder
  • National Science Foundation
PUBLISHED 23 Oct 2018
https://doi.org/10.12688/f1000research.16516.1
Method Article metrics
Orchestrating a community-developed computational workshop and accompanying training materials
[version 1; peer review: 2 approved]
Sean Davis, Marcel Ramos, Lori Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron
Peer Reviewers Ewy Mathe; Kevin Blighe
  • Funders
  • Horizon 2020
  • National Cancer Institute
  • National Human Genome Research Institute
PUBLISHED 17 Oct 2018
https://doi.org/10.12688/f1000research.16605.1
Software Tool Article metrics
KnetMaps: a BioJS component to visualize biological knowledge networks
[version 1; peer review: 3 approved, 1 approved with reservations]
Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak
Peer Reviewers Ian Dunham and Gareth Peat; Chia-Yi Cheng; Nicholas J. Provart; Ramil Mauleon
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 17 Oct 2018
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