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 in 
https://doi.org/10.12688/f1000research.110492.2
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Revised
From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)
[version 2; peer review: 2 approved]
Maksim Nesterenko, Aleksei Miroliubov
Peer Reviewers Andreas Hejnol and Ferenc Kagan; Viatcheslav Ivanenko
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.122306.1
Research Article metrics
Novel Helicobacter pylori-associated hemolysis Hp0499 and Hp1490 and its association with severity of gastritis
[version 1; peer review: 1 approved with reservations]
Sang Ketut Widiana, Titong Sugihartono, Dalla Doohan, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Adi Wasis Prakosa, Ricky Indra Alfaray, Camilia Metadea Aji Safitri, Rizki Amalia, Yoshio Yamaoka, Muhammad Miftahussurur
Peer Reviewers I Ketut Mariadi
  • Funder
  • Dr.Soetomo Teaching Hospital, Surabaya, Indonesia.
PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.128446.1
Research Article metrics
Genetic mapping and pedigree analysis of non-syndromic congenital deafness in Surabaya, Indonesia
[version 1; peer review: 1 approved with reservations, 2 not approved]
Nyilo Purnami, Hamam Kusumagani, Puguh Setyo Nugroho, Zakiyatul Faizah, In Seok Moon
Peer Reviewers Arunachalam Iyer; Elvis Twumasi Aboagye; Adebolajo Adeyemo
  • Funder
  • Universitas Airlangga
PUBLISHED 05 Jan 2023
https://doi.org/10.12688/f1000research.128842.1
Research Article metrics AWAITING PEER REVIEW
Association between polymorphisms within the gene coding for tumor necrosis factor (TNF)-alpha with outcomes of treatment in a sample of Iraqi patients with ankylosing spondylitis taking etanercept: an observational study
[version 1; peer review: awaiting peer review]
Shaimaa Saleh Khudhur, Eman Saadi Saleh, Mohammed Hadi Alosami, Laith G. Shareef
Peer Reviewers Invited
PUBLISHED 23 Dec 2022
https://doi.org/10.12688/f1000research.127935.1
Genome Note metrics
Draft genome of a clinical Pseudomonas qingdaonensis isolate from a hospitalized patient at Kenyatta National Hospital, Kenya
[version 1; peer review: 2 approved]
Brian Ogoti, Racheal Gachogo, Frank Onyambu
Peer Reviewers Gerald Mboowa; Aquillah Kanzi
  • Funder
  • Center of Molecular Biosciences
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.129212.1
Genome Note metrics
An updated version of the Madagascar periwinkle genome
[version 1; peer review: 2 approved]
Clément Cuello, Emily Amor Stander, Hans J. Jansen, Thomas Dugé De Bernonville, Audrey Oudin, Caroline Birer Williams, Arnaud Lanoue, Nathalie Giglioli Guivarc'h, Nicolas Papon, Ron P. Dirks, Michael Krogh Jensen, Sarah Ellen O'Connor, Sébastien Besseau, Vincent Courdavault
Peer Reviewers Evangelos Tatsis; Amit Rai
  • Funders
  • ARD CVL Biopharmaceutical program of the Région Centre-Val de Loire
  • Agence Nationale de la Recherche
  • Horizon 2020
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.128354.1
Method Article metrics
BOREALIS: an R/Bioconductor package to detect outlier methylation from bisulfite sequencing data
[version 1; peer review: 2 approved with reservations]
Gavin R. Oliver, W. Garrett Jenkinson, Rory J. Olson, Laura E. Schultz-Rogers, Eric W. Klee
Peer Reviewers Philipp Jurmeister and Maximilian Leitheiser; Vicente Yepez
  • Funder
  • Center for Individualized Medicine, Mayo Clinic
PUBLISHED 20 Dec 2022
https://doi.org/10.12688/f1000research.128391.1
Research Article metrics
Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
[version 1; peer review: 2 not approved]
Shyaron Poudel, Brett Hale, Asela J. Wijeratne
Peer Reviewers Aaron John Stevens; Sadaruddin Chachar
  • Funders
  • Arkansas State University
  • Arkansas Biosciences Institute
PUBLISHED 07 Dec 2022
https://doi.org/10.12688/f1000research.110472.3
Research Article metrics
Revised
IL1B gene variants, but not TNF, CXCL8, IL6 and IL10, modify the course of cystic fibrosis in Polish patients.
[version 3; peer review: 1 approved, 2 approved with reservations]
Oliwia Zakerska-Banaszak, Joanna Gozdzik-Spychalska, Marcin Gabryel, Joanna Zuraszek, Marzena Skrzypczak-Zielinska, Ryszard Slomski, Agnieszka Dobrowolska, Tomasz Piorunek, Halina Batura-Gabryel
Peer Reviewers Tadeusz Przybyłowski; Daniel J. Smith; Agnieszka Swiatecka-Urban
  • Funder
  • Grant for young scientists from the Poznan Medical University
LATEST VERSION PUBLISHED 22 Nov 2022
https://doi.org/10.12688/f1000research.124719.1
Genome Note metrics
Inference of a genome-wide protein-coding gene set of the inshore hagfish Eptatretus burgeri
[version 1; peer review: 2 approved with reservations]
Osamu Nishimura, Kazuaki Yamaguchi, Yuichiro Hara, Kaori Tatsumi, Jeramiah J Smith, Mitsutaka Kadota, Shigehiro Kuraku
Peer Reviewers Vincent Laudet; Daniel Ocampo Daza
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • Japan Society for the Promotion of Science
  • National Science Foundation
PUBLISHED 08 Nov 2022
https://doi.org/10.12688/f1000research.124051.1
Brief Report metrics
Analysis by metagenomic next-generation sequencing of the lung virome during mechanical ventilation
[version 1; peer review: 2 approved with reservations]
Julien Do Vale, Damien Roux, Antoine Bridier Nahmias, Maud Salmona, Séverine Mercier-Delarue, Noémie Ranger, Jean-Damien Ricard, Jérôme Le Goff, Mélanie Fromentin
Peer Reviewers Allan Glanville; Sophie Vallet
  • Funder
  • European Society of Intensive Care Medicine
PUBLISHED 02 Nov 2022
https://doi.org/10.12688/f1000research.121947.1
Genome Note metrics
Identification of the exuviae of larva from Teinopalpus aureus Mell, 1923 using the complete mitochondrial genome
[version 1; peer review: 2 approved with reservations]
Lei-Lei Liu, Li-Hua Zhang, Guo-Hang Weng, Wei-Qin Wang, Xi-Cheng Gong, Shan-Biao Wang, Shu-Sheng Zhang
Peer Reviewers Chang-Bae Kim; Xue-yan Li
  • Funder
  • Zhejiang Normal University
PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.125628.2
Research Article metrics
Revised
Genetic and environmental perturbations alter the rhythmic expression pattern of a circadian long non-coding RNA, Per2AS, in mouse liver
[version 2; peer review: 2 approved]
Lin Miao, Kyle R. Batty, Ayana N. Jackson, Heather A. Pieno, Maisy W. Rhoades, Shihoko Kojima
Peer Reviewers Hikari Yoshitane; Yao Cai
  • Funder
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.17525.2
Research Article metrics
Revised
Correlation of cervical progesterone levels to plasma progesterone levels in normal pregnancy and preterm labor: A cross-sectional study
[version 2; peer review: 2 approved with reservations, 1 not approved]
Yuyun Lisnawati, Noroyono Wibowo
Peer Reviewers Pei F. Lai; Charles Bitamazire Businge; Yiming Chen
  • Funder
  • Directorate of Research and Community Engagement, Indonesia
LATEST VERSION PUBLISHED 25 Oct 2022
https://doi.org/10.12688/f1000research.127733.1
Retraction metrics NOT PEER REVIEWED
RETRACTED: Non-intertwined strands of plasmid DNA contradict the Watson and Crick model of DNA structure [version 3; peer review: 1 approved, 1 approved with reservations, 1 not approved]
[version 1; peer review: not peer reviewed]
Pawan Kumar
PUBLISHED 25 Oct 2022
https://doi.org/10.12688/f1000research.19426.2
Software Tool Article metrics
Revised
Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
[version 2; peer review: 2 approved]
Andrian Yang, Joshua Y. S. Tang, Michael Troup, Joshua W. K. Ho
Peer Reviewers Quan Nguyen; Marco Previtali and Luca Denti
  • Funders
  • National Heart Foundation of Australia
  • Amazon Web Services
  • National Health and Medical Research Council
  • Department of Education, Australian Governement
LATEST VERSION PUBLISHED 13 Oct 2022
https://doi.org/10.12688/f1000research.26300.2
Research Article metrics
Revised
Identification of selected primary bloodstream infection pathogens in patients attending Kisii level five and Homa Bay county hospitals
[version 2; peer review: 2 approved with reservations, 1 not approved]
Ronald Kirera, Erick Kipkirui, Margaret Koech, Abigael Ombogo, Janet Ndonye, Mary Kirui, Cliff Odhiambo Philip, Nancy Kipkemoi, Elizabeth Odundo, Alexander F. Flynn, Christine Hulseberg, Judd Walson, Joseph Nganga, Daniel Kariuki
Peer Reviewers Ciira Kiiyukia; Josette Raymond; Sandip Patil
  • Funder
  • HJF Medical Research International
LATEST VERSION PUBLISHED 28 Sep 2022
https://doi.org/10.12688/f1000research.109602.2
Research Article metrics
Revised
Characterizing gene expression in an in vitro biomechanical strain model of joint health
[version 2; peer review: 1 approved, 1 not approved]
Anthony Hung, Genevieve Housman, Emilie A. Briscoe, Claudia Cuevas, Yoav Gilad
Peer Reviewers Alex Pollen and Jenelle Wallace; Shireen Lamande
  • Funders
  • Achievement Rewards for College Scientists Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 27 Sep 2022
https://doi.org/10.12688/f1000research.124450.1
Genome Note metrics
The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
[version 1; peer review: 1 approved, 1 approved with reservations]
Yongxin Miao, Yidi Li, Yaqing Mei, Cheng Chen, Liling Sun, Baowei Zhang, Hui Wang
Peer Reviewers Chaochao Hu; Adrian Marciszak
  • Funder
  • Dabie Mountains Biodiversity Comprehensive Scientific Investigation project 3
PUBLISHED 26 Sep 2022
https://doi.org/10.12688/f1000research.54719.4
Research Article metrics
Revised
Soluble FMS-Like Tyrosine Kinase-1: Role in placenta accreta spectrum disorder
[version 4; peer review: 2 approved]
Sarma Lumbanraja, M Rizki Yaznil, Andre M Siahaan, Bancin Berry Eka Parda
Peer Reviewers Akihide Ohkuchi; Ferdinando Antonio Gulino
  • Funder
  • Research Institute Universitas Sumatera Utara
LATEST VERSION PUBLISHED 07 Sep 2022
121-140 of 2,038 ARTICLES
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