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 in 
https://doi.org/10.12688/f1000research.124051.1
Brief Report metrics
Analysis by metagenomic next-generation sequencing of the lung virome during mechanical ventilation
[version 1; peer review: 2 approved with reservations]
Julien Do Vale, Damien Roux, Antoine Bridier Nahmias, Maud Salmona, Séverine Mercier-Delarue, Noémie Ranger, Jean-Damien Ricard, Jérôme Le Goff, Mélanie Fromentin
Peer Reviewers Allan Glanville; Sophie Vallet
  • Funder
  • European Society of Intensive Care Medicine
PUBLISHED 02 Nov 2022
https://doi.org/10.12688/f1000research.121947.1
Genome Note metrics
Identification of the exuviae of larva from Teinopalpus aureus Mell, 1923 using the complete mitochondrial genome
[version 1; peer review: 2 approved with reservations]
Lei-Lei Liu, Li-Hua Zhang, Guo-Hang Weng, Wei-Qin Wang, Xi-Cheng Gong, Shan-Biao Wang, Shu-Sheng Zhang
Peer Reviewers Chang-Bae Kim; Xue-yan Li
  • Funder
  • Zhejiang Normal University
PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.125628.2
Research Article metrics
Revised
Genetic and environmental perturbations alter the rhythmic expression pattern of a circadian long non-coding RNA, Per2AS, in mouse liver
[version 2; peer review: 2 approved]
Lin Miao, Kyle R. Batty, Ayana N. Jackson, Heather A. Pieno, Maisy W. Rhoades, Shihoko Kojima
Peer Reviewers Hikari Yoshitane; Yao Cai
  • Funder
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.17525.2
Research Article metrics
Revised
Correlation of cervical progesterone levels to plasma progesterone levels in normal pregnancy and preterm labor: A cross-sectional study
[version 2; peer review: 2 approved with reservations, 1 not approved]
Yuyun Lisnawati, Noroyono Wibowo
Peer Reviewers Pei F. Lai; Charles Bitamazire Businge; Yiming Chen
  • Funder
  • Directorate of Research and Community Engagement, Indonesia
LATEST VERSION PUBLISHED 25 Oct 2022
https://doi.org/10.12688/f1000research.127733.1
Retraction metrics NOT PEER REVIEWED
RETRACTED: Non-intertwined strands of plasmid DNA contradict the Watson and Crick model of DNA structure [version 3; peer review: 1 approved, 1 approved with reservations, 1 not approved]
[version 1; peer review: not peer reviewed]
Pawan Kumar
PUBLISHED 25 Oct 2022
https://doi.org/10.12688/f1000research.19426.2
Software Tool Article metrics
Revised
Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
[version 2; peer review: 2 approved]
Andrian Yang, Joshua Y. S. Tang, Michael Troup, Joshua W. K. Ho
Peer Reviewers Quan Nguyen; Marco Previtali and Luca Denti
  • Funders
  • National Heart Foundation of Australia
  • Amazon Web Services
  • National Health and Medical Research Council
  • Department of Education, Australian Governement
LATEST VERSION PUBLISHED 13 Oct 2022
https://doi.org/10.12688/f1000research.26300.2
Research Article metrics
Revised
Identification of selected primary bloodstream infection pathogens in patients attending Kisii level five and Homa Bay county hospitals
[version 2; peer review: 2 approved with reservations, 1 not approved]
Ronald Kirera, Erick Kipkirui, Margaret Koech, Abigael Ombogo, Janet Ndonye, Mary Kirui, Cliff Odhiambo Philip, Nancy Kipkemoi, Elizabeth Odundo, Alexander F. Flynn, Christine Hulseberg, Judd Walson, Joseph Nganga, Daniel Kariuki
Peer Reviewers Ciira Kiiyukia; Josette Raymond; Sandip Patil
  • Funder
  • HJF Medical Research International
LATEST VERSION PUBLISHED 28 Sep 2022
https://doi.org/10.12688/f1000research.109602.2
Research Article metrics
Revised
Characterizing gene expression in an in vitro biomechanical strain model of joint health
[version 2; peer review: 1 approved, 1 not approved]
Anthony Hung, Genevieve Housman, Emilie A. Briscoe, Claudia Cuevas, Yoav Gilad
Peer Reviewers Alex Pollen and Jenelle Wallace; Shireen Lamande
  • Funders
  • Achievement Rewards for College Scientists Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 27 Sep 2022
https://doi.org/10.12688/f1000research.124450.1
Genome Note metrics
The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
[version 1; peer review: 1 approved, 1 approved with reservations]
Yongxin Miao, Yidi Li, Yaqing Mei, Cheng Chen, Liling Sun, Baowei Zhang, Hui Wang
Peer Reviewers Chaochao Hu; Adrian Marciszak
  • Funder
  • Dabie Mountains Biodiversity Comprehensive Scientific Investigation project 3
PUBLISHED 26 Sep 2022
https://doi.org/10.12688/f1000research.54719.4
Research Article metrics
Revised
Soluble FMS-Like Tyrosine Kinase-1: Role in placenta accreta spectrum disorder
[version 4; peer review: 2 approved]
Sarma Lumbanraja, M Rizki Yaznil, Andre M Siahaan, Bancin Berry Eka Parda
Peer Reviewers Akihide Ohkuchi; Ferdinando Antonio Gulino
  • Funder
  • Research Institute Universitas Sumatera Utara
LATEST VERSION PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.124416.1
Research Article metrics
HLA class I and discoveries of the HLA-K (pseudogene) related to disease severity and progression in patients with spondyloarthritis in Dr. Soetomo General Hospital, a tertiary health care center in Surabaya, Indonesia
[version 1; peer review: 1 approved, 1 not approved]
Yuliasih ., Nabilatun Nisa', Lita Diah Rahmawati, Cahaya Prastayudha
Peer Reviewers Jose Antonio Pinto-Tasende; James McCluskey
PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.125163.1
Review metrics
cGAS-STING pathway targeted therapies and their applications in the treatment of high-grade glioma
[version 1; peer review: 3 approved]
Shashwat Tripathi, Hinda Najem, Akanksha Sanjay Mahajan, Peng Zhang, Justin T Low, Alexander H Stegh, Michael A Curran, David M Ashley, Charles David James, Amy B Heimberger
Peer Reviewers Marcin Kortylewski; Edjah K. Nduom; Maria G. Castro
  • Funders
  • Charlie Teo Foundation
  • National Institutes of Health
PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.51749.2
Method Article metrics
Revised
satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications
[version 2; peer review: 2 approved]
Jeroen Gilis, Kristoffer Vitting-Seerup, Koen Van den Berge, Lieven Clement
Peer Reviewers Marek Cmero; Alejandro Reyes
  • Funders
  • Belgian American Educational Foundation
  • Fonds Wetenschappelijk Onderzoek
LATEST VERSION PUBLISHED 08 Aug 2022
https://doi.org/10.12688/f1000research.121980.1
Research Article metrics
Next-generation sequencing (NGS) reveals low-abundance HIV-1 drug resistance mutations among patients experiencing virological failure at the time of therapy switching in Uganda
[version 1; peer review: 1 approved with reservations]
Maria Magdalene Namaganda, Hakim Sendagire, David Patrick Kateete, Edgar Kigozi, Moses Luutu Nsubuga, Fred Ashaba Katabazi, Jupiter Marina Kabahita, Fredrick Elishama Kakembo, Stephen Kanyerezi, Barbara Castelnuovo, Andrew Kambugu, Isaac Ssewanyana, Chris Okirya, Susan Nabadda, Moses Joloba, Gerald Mboowa
Peer Reviewers Pascal O. Bessong
  • Funders
  • The Africa Center of Excellence in Materials, Product Development and Nanotechnology (MAPRONANO ACE)
  • Fogarty International Center of the National Institutes of Health
  • Nurturing Genomics and Bioinformatics Research Capacity in Africa (BRecA)
  • Health Professions Education and Training for Strengthening the Health System and Services in Uganda (HEPI-SHSSU)
PUBLISHED 04 Aug 2022
https://doi.org/10.12688/f1000research.123884.1
Study Protocol metrics
The burden of BRCA1 and BRCA2 gene mutations among Vietnamese women and their associated factors: A protocol for a systematic review and meta-analysis
[version 1; peer review: 1 not approved]
Phuc Thai Tran, Duc Quang Tran, Chi Thi Quynh Vu, Quang Ngoc Phan, Anh Thi Thu Nguyen
Peer Reviewers Weang Kee Ho and Boon Hong Ang
PUBLISHED 28 Jul 2022
https://doi.org/10.12688/f1000research.122113.1
Method Article metrics
Interactive visualization of spatial omics neighborhoods
[version 1; peer review: 2 approved with reservations]
Tinghui Xu, Kris Sankaran
Peer Reviewers Guangdun Peng and Miao Zhu; Oscar Ospina
PUBLISHED 18 Jul 2022
https://doi.org/10.12688/f1000research.75471.3
Correspondence metrics
Revised
Positional weight matrices have sufficient prediction power for analysis of noncoding variants
[version 3; peer review: 2 approved]
Alexandr Boytsov, Sergey Abramov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Peer Reviewers Victor G. Levitsky; Philip Machanick
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 04 Jul 2022
https://doi.org/10.12688/f1000research.121927.1
Research Article metrics
Intrapartum care intervention fidelity and factors associated with it in South Wollo Administrative Zone, Northeast Ethiopia.
[version 1; peer review: 2 approved with reservations]
Asressie Molla, Dr Abebaw Gebeyehu, Professor Solomon Mekonnen, Professor Kassahun ALemu, Dr Zemene Tigabu
Peer Reviewers Abrham Debeb Sendekie; Jenny Jung
  • Funder
  • University o Gondar
PUBLISHED 28 Jun 2022
https://doi.org/10.12688/f1000research.53842.2
Opinion Article metrics
Revised
Python for gene expression
[version 2; peer review: 2 approved]
Leonid Bystrykh
Peer Reviewers Sergio Peignier; Yasha Hasija
LATEST VERSION PUBLISHED 23 Jun 2022
https://doi.org/10.12688/f1000research.53214.4
Research Article metrics
Revised
Discrimination of the SARS–CoV-2 strains using of coloured s-LASCA-imaging of GB-speckles, developed for the gene “S” nucleotide sequences
[version 4; peer review: 2 approved, 1 approved with reservations]
Onega Ulianova, Yury Saltykov, Sergey Ulyanov, Sergey Zaytsev, Alexander Ulyanov, Valentina Feodorova
Peer Reviewers Oleg Angelsky; Alexey Bashkatov and Claudia Zenkova; Dmitry A. Zimnyakov
  • Funder
  • Russian Foundation for Basic Research
LATEST VERSION PUBLISHED 22 Jun 2022
121-140 of 2,028 ARTICLES
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