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https://doi.org/10.12688/f1000research.20916.2
Method Article metrics
Revised
Fast effect size shrinkage software for beta-binomial models of allelic imbalance
[version 2; peer review: 1 approved, 2 approved with reservations]
Joshua P. Zitovsky, Michael I. Love
Peer Reviewers Matthew Stephens; Jarad Niemi and Ignacio Alvarez-Castro; Ernest Turro
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 14 Dec 2020
https://doi.org/10.12688/f1000research.27262.1
Method Article metrics
A pipeline to analyse time-course gene expression data
[version 1; peer review: 2 approved with reservations]
Nelle Varoquaux, Elizabeth Purdom
Peer Reviewers Michael I. Love; Rodolphe Thiébaut
  • Funders
  • U.S. Department of Energy
  • École Normale Supérieure
  • Gordon and Betty Moore Foundation
  • Alfred P. Sloan Foundation
PUBLISHED 11 Dec 2020
https://doi.org/10.12688/f1000research.22021.4
Research Article metrics
Revised
Effects of polyisoprenoids from Avicennia lanata and Avicennia alba leaves on the gene expression of PI3K, Akt1, mTOR, P53, and EGFR in human colorectal adenocarcinoma WiDr cells
[version 4; peer review: 1 approved, 2 not approved]
Taufiq Qurrohman, Poppy Anjelisa Zaitun Hasibuan, Arif Nuryawan, Sumaiyah Sumaiyah, Etti Sartina Siregar, Mohammad Basyuni
Peer Reviewers Ewa Swiezewska and Liliana Surmacz; Aldes Lesbani; Amos Fatokun
  • Funder
  • Ministry of Research, Technology and Higher Education of the Republic of Indonesia
LATEST VERSION PUBLISHED 09 Dec 2020
https://doi.org/10.12688/f1000research.24808.2
Review metrics
Revised
SMARCB1/INI1-deficient tumors of adulthood
[version 2; peer review: 2 approved]
Nathaniel A. Parker, Ammar Al-Obaidi, Jeremy M. Deutsch
Peer Reviewers Conor Patrick Malone; Abdulqadir Nashwan
LATEST VERSION PUBLISHED 09 Dec 2020
https://doi.org/10.12688/f1000research.25413.2
Research Article metrics
Revised
Biocuration - mapping resources and needs
[version 2; peer review: 2 approved]
Alexandra Holinski, Melissa L. Burke, Sarah L. Morgan, Peter McQuilton, Patricia M. Palagi
Peer Reviewers Tanya Berardini; Luana Licata
  • Funder
  • ELIXIR
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.24353.2
Case Report metrics
Revised
Case Report: Simultaneously diagnosed gastric adenocarcinoma and pernicious anemia – a classic association
[version 2; peer review: 2 approved, 1 approved with reservations]
Syed Kamran, Mattias K. Dilling, Nathaniel A. Parker, Joel Alderson, Nathan D. Tofteland, Quoc V. Truong
Peer Reviewers Faustina N A. Sackey, Ph.D., FMWI; Talha Badar; Martyn Hooper MBE
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.25009.2
Research Article metrics
Revised
Immunohistochemical analysis of stem cells from human exfoliated deciduous teeth seeded in carbonate apatite scaffold for the alveolar bone defect in Wistar rats (Rattus novergicus)
[version 2; peer review: 2 approved]
Tania Saskianti, Alexander Patera Nugraha, Chiquita Prahasanti, Diah Savitri Ernawati, Ketut Suardita, Wibi Riawan
Peer Reviewers Niswati Fatmah Rosyida; Lidia Audrey Rocha Valadas
  • Funder
  • Universitas Airlangga
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.26488.1
Case Report metrics
Case Report: Prostatitis tuberculosis mimicking prostate cancer
[version 1; peer review: 2 approved with reservations]
Syah Mirsya Warli, Dhirajaya Dharma Kadar, Muhammad Haritsyah Warli
Peer Reviewers Dahril Dahril; Zhuo Tony Su
PUBLISHED 18 Nov 2020
https://doi.org/10.12688/f1000research.15666.3
Research Article metrics
Revised
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
[version 3; peer review: 2 approved]
Angelo Duò, Mark D. Robinson, Charlotte Soneson
Peer Reviewers Jean Fan; Saskia Freytag
  • Funders
  • Swiss National Science Foundation
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 16 Nov 2020
https://doi.org/10.12688/f1000research.24654.2
Research Article metrics
Revised
Investigating a novel multiplex proteomics technology for detection of changes in serum protein concentrations that may correlate to tumor burden
[version 2; peer review: 2 approved]
Annie He Ren, Ioannis Prassas, Antoninus Soosaipillai, Stephanie Jarvi, Steven Gallinger, Vathany Kulasingam, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Anna E Lokshin
  • Funder
  • Mount Sinai Hospital
LATEST VERSION PUBLISHED 13 Nov 2020
https://doi.org/10.12688/f1000research.25560.1
Data Note metrics
The complete genome sequences of 22 parrot species (Psittaciformes, Aves)
[version 1; peer review: 3 approved with reservations]
Taylor Hains, Kathleen O'Neill, Jafet Velez, Nancy Speed, Susan Clubb, Taras Oleksyk, Stacy Pirro
Peer Reviewers Paweł Mackiewicz; Devon DeRaad and John McCormack; Roberto Ambrosini and Simona Secomandi
  • Funder
  • Iridian Genomes Inc
PUBLISHED 12 Nov 2020
https://doi.org/10.12688/f1000research.26438.2
Case Report metrics
Revised
Case Report: Complete heart block as a manifestation of cardiac metastasis of oral cancer
[version 2; peer review: 2 approved]
Andrianto Andrianto, Eka Prasetya Budi Mulia, Denny Suwanto, Dita Aulia Rachmi, Mohammad Yogiarto
Peer Reviewers Radityo Prakoso; Pieter A.F.M. Doevendans
LATEST VERSION PUBLISHED 11 Nov 2020
https://doi.org/10.12688/f1000research.22541.1
Research Article metrics
Use of 16s rRNA to identify non-lactose-fermenting bacilli and molecular detection of ESBL resistance genes associated with hospital-acquired infection in Soba University Hospital, Sudan
[version 1; peer review: 1 approved]
Wissam Ahmed Al Hag, Hana Elbadawi, Muzamil Mahdi Abdel Hamid
Peer Reviewers Asim Elnour
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.18134.3
Brief Report metrics RETRACTED
Revised
RETRACTED:  Non-intertwined strands of plasmid DNA contradict the Watson and Crick model of DNA structure
[version 3; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Pawan Kumar
LATEST VERSION PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.25637.2
Method Article metrics
Revised
Inducible TDG knockout models to study epigenetic regulation
[version 2; peer review: 3 approved]
Simon D. Schwarz, Eliane Grundbacher, Alexandra M. Hrovat, Jianming Xu, Anna Kuśnierczyk, Cathrine B. Vågbø, Primo Schär, David Schuermann
Peer Reviewers Jonathan Sczepanski; Joseph Torchia; Sebastian Bultmann
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 19 Oct 2020
https://doi.org/10.12688/f1000research.22769.2
Research Article metrics
Revised
Risk factors for composite adverse outcomes of postpartum haemorrhage, Mpilo Central Hospital, Bulawayo, Zimbabwe
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Solwayo Ngwenya
Peer Reviewers Jaffu O. Chilongola; Michael Johnson Mahande; Eba Abdisa
LATEST VERSION PUBLISHED 15 Oct 2020
https://doi.org/10.12688/f1000research.22242.2
Software Tool Article metrics
Revised
AlignmentViewer: Sequence Analysis of Large Protein Families
[version 2; peer review: 2 approved]
Roc Reguant, Yevgeniy Antipin, Rob Sheridan, Christian Dallago, Drew Diamantoukos, Augustin Luna, Chris Sander, Nicholas Paul Gauthier
Peer Reviewers Erik Larsson Lekholm; Alex Bateman
  • Funders
  • Human Frontier Science Program
  • Harvard Medical School
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 15 Oct 2020
https://doi.org/10.12688/f1000research.23185.2
Review metrics
Revised
Gene editing in dermatology: Harnessing CRISPR for the treatment of cutaneous disease
[version 2; peer review: 2 approved]
Catherine Baker, Matthew S. Hayden
Peer Reviewers Bindu Hegde; Jillian Richmond
  • Funders
  • Hitchcock Foundation
  • American Skin Association
LATEST VERSION PUBLISHED 07 Oct 2020
https://doi.org/10.12688/f1000research.26731.1
Research Article metrics
Bioinformatic study to discover natural molecules with activity against COVID-19
[version 1; peer review: 2 approved]
Sweta Singh, Hector Florez
Peer Reviewers Pritha Ghosh; Maria Florencia Pollo-Cattaneo
  • Funder
  • Universidad Distrital Francisco Jose de Caldas
PUBLISHED 06 Oct 2020
https://doi.org/10.12688/f1000research.19598.5
Research Article metrics
Revised
Lipidomics reveal the protective effects of a vegetable-derived isothiocyanate against retinal degeneration
[version 5; peer review: 3 approved, 1 not approved]
Faith A. Kwa, Nabeela K. Dulull, Ute Roessner, Daniel A. Dias, Thusitha W. Rupasinghe
Peer Reviewers Chris Barlow; Yanfei (Jacob) Qi; Alexa Klettner; Timothy Couttas
  • Funder
  • RMIT University
LATEST VERSION PUBLISHED 05 Oct 2020
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