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https://doi.org/10.12688/f1000research.171338.2
Research Article metrics
Revised
Deconvoluting the Electrophysiological Signatures of Myocardial Ischemia using a Validated Machine Learning Framework
[version 2; peer review: 1 approved, 1 approved with reservations]
Ahmad Mahmood, Kiel Jacqueline, Joanne Lac
Peer Reviewers Mert İlker Hayıroğlu; Cenitta D
LATEST VERSION PUBLISHED 31 Jan 2026
https://doi.org/10.12688/f1000research.175540.1
Software Tool Article metrics AWAITING PEER REVIEW
Workflow graphical editor and translator to Nextflow
[version 1; peer review: awaiting peer review]
Ilya Kiselev, Anna Ryabova, Fedor Kolpakov
Peer Reviewers Invited
  • Funder
  • «Sirius» Federal Territory
PUBLISHED 29 Jan 2026
https://doi.org/10.12688/f1000research.173901.1
Method Article metrics AWAITING PEER REVIEW
From Quality Control to Visualization: scToolkit for Reproducible Single-Cell RNA-Seq
[version 1; peer review: awaiting peer review]
Christopher Krolla, Tonmoy Das, Ariane Metzger, Melanie Boerries, Sajib Chakraborty, Geoffroy Andrieux
Peer Reviewers Invited
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Deutsche Forschungsgemeinschaft
PUBLISHED 28 Jan 2026
https://doi.org/10.12688/f1000research.170680.2
Review metrics
Revised
Integrating spatial omics with routine haematoxylin and eosin in formalin-fixed paraffin-embedded: a step-by-step clinical workflow
[version 2; peer review: 2 approved, 1 approved with reservations]
Nasar Alwahaibi
Peer Reviewers Marie-Liesse Asselin-Labat; Da-Wei Yang; Xu Xun
  • Funder
  • None
LATEST VERSION PUBLISHED 19 Jan 2026
https://doi.org/10.12688/f1000research.173495.1
Systematic Review metrics AWAITING PEER REVIEW
Software Tools for Passive Acoustic Monitoring in Aquatic and Terrestrial Bio- and Ecoacoustics: A Living Systematic Review
[version 1; peer review: awaiting peer review]
Tara Hanf-Dressler, Rym Nouioua, Karolin Thomisch, Dorian Cazau, Simon de Selys Longchamps, Kevin F.A. Darras
Peer Reviewers Invited
  • Funders
  • Studienstiftung des Deutschen Volkes
  • Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
PUBLISHED 13 Jan 2026
https://doi.org/10.12688/f1000research.168987.3
Software Tool Article metrics
Revised
StaggR: an interactive R/Shiny application for planning and visualizing staggered experimental protocols
[version 3; peer review: 1 approved, 1 approved with reservations]
Alex Michael Francette
Peer Reviewers Thomas Darde; Charuka D Wickramasinghe
  • Funder
  • Washington University in St. Louis
LATEST VERSION PUBLISHED 13 Jan 2026
https://doi.org/10.12688/f1000research.173844.1
Research Article metrics
Insights into the Datasets, Tools, and Training Needs of the AnVIL Community: 2024
[version 1; peer review: 1 approved with reservations]
Kathryn J. Isaac, Katherine E. L. Cox, Kai Yin Ho, Elizabeth M. Humphries, Natalie Kucher, Jeffrey T. Leek, Stephen Mosher, Michael C. Schatz, Frederick J. Tan, Ava M. Hoffman
Peer Reviewers Hassan Rehan
  • Funder
  • National Institutes of Health, National Human Genome Research Institute
PUBLISHED 22 Dec 2025
https://doi.org/10.12688/f1000research.171697.1
Research Article metrics
Antibiogram, antibiotic resistance genes and health risks of Listeria species from fruits and vegetables in selected locations in Nigeria
[version 1; peer review: 1 approved]
Anthony Adegoke, Kate O Igoche, Olaniyi Owolawi, Moses Ekpenyong, Aso Joseph Omololu, Olayinka A Aiyegoro
Peer Reviewers Rahul Vashishth
  • Funder
  • National Research Foundation
PUBLISHED 22 Dec 2025
https://doi.org/10.12688/f1000research.172881.1
Research Article metrics
Methods2AOP: A Collaboration to Strengthen the Integration of Test Methods into the Adverse Outcome Pathway Framework
[version 1; peer review: 2 approved with reservations]
Agnes L. Karmaus, William Bisson, Albert Braeuning, Xiaoqing Chang, Laure-Alix Clerbaux, Julija Filipovska, Jennifer Fostel, Ksenia Groh, Ginnie Hench, Eftychia Lekka, Scott G. Lynn, Kelly A. Magurany, Kristan Markey, Anna Maria Masci, Holly Mortensen, Jason M. O'Brien, Emily Reinke, Nyssa Tucker, Vassilis Virvilis, Barbara Viviani, Sara Vliet, Clemens Wittwehr, Helena T. Hogberg
Peer Reviewers Jinhee Choi and Elizabeth Dufourcq Sekatcheff; Alexandra Schaffert
  • Funders
  • the Brains for Brussels program supported by Innoviris – Brussels Capital Region
  • US EPA Endocrine Disruptor Screening Program (EDSP)
  • National Institute of Environmental Health Sciences, National Institutes of Health
PUBLISHED 08 Dec 2025
https://doi.org/10.12688/f1000research.171889.1
Software Tool Article metrics
BISCUIT: An Open-Source Platform for Visual Comparison of Segmentation Models in Bioimage Analysis
[version 1; peer review: 2 approved with reservations]
Emmanouela Rantsiou, Franziska Oschmann, Lukas von Ziegler, Thomas Wüst, Andrzej J. Rzepiela, Szymon Stoma
Peer Reviewers Constantin Pape Pape; Peter Bankhead and Laura Nicolás-Sáenz
PUBLISHED 18 Nov 2025
https://doi.org/10.12688/f1000research.165281.1
Software Tool Article metrics
DataMap: A Browser-based App for Visualizing High-Dimensional Data
[version 1; peer review: 1 approved with reservations]
Xijin Ge
Peer Reviewers Guangchuang Yu
  • Funders
  • National Institute of General Medical Sciences
  • National Human Genome Research Institute
PUBLISHED 10 Nov 2025
https://doi.org/10.12688/f1000research.171593.1
Research Article metrics AWAITING PEER REVIEW
Analysis of skin mycobiota associated with alopecia in captive cynomolgus macaques (Macaca fascicularis) based on Oxford Nanopore Technologies
[version 1; peer review: awaiting peer review]
Natthanit Phokkhasub, Suthida Visedthorn, Pavit Klomkliew, Prangwalai Chanchaem, Kittima Phutthawong, Taratorn Kemthong, Vorthon Sawaswong, Ariya Khamwut, Suchinda Malaivijitnond, Sunchai Payungporn
Peer Reviewers Invited
  • Funders
  • The 90th Anniversary of Chulalongkorn University Ratchadaphiseksomphot Fund
  • The National Research Council of Thailand (NRCT)
PUBLISHED 07 Nov 2025
https://doi.org/10.12688/f1000research.170584.1
Research Article metrics
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 1; peer review: 2 approved with reservations]
Alejandra Clavijo-Giraldo, Sandra Uribe Soto, Andrés Gómez-Palacio
Peer Reviewers Renee Ali; Michael J Raupach
  • Funder
  • This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
PUBLISHED 28 Oct 2025
https://doi.org/10.12688/f1000research.163212.2
Data Note metrics
Revised
CD4+ T-cell transcription factors as early predictors of phenoconversion in idiopathic rapid eye movement sleep behaviour disorder
[version 2; peer review: 2 approved]
Monica Pinoli, Michele Terzaghi, Franca Marino, Cristoforo Comi, Maurizio Versino, Marco Cosentino
Peer Reviewers Tommaso Schirinzi; Adawiya J. Haider
LATEST VERSION PUBLISHED 06 Oct 2025
https://doi.org/10.12688/f1000research.149807.2
Study Protocol metrics
Revised
Biofeedback therapy using Cerebri for the prevention of migraine attacks in adults with episodic migraine (BioCer): a randomized, wait-list controlled trial – the study protocol
[version 2; peer review: 2 approved]
Amalie Christine Poole, Anker Stubberud, Melanie Simpson, Lise Øie, Einar Tobias Vassbø Skalstad, Marte-Helene Bjørk, Espen Saxhaug Kristoffersen, Kjersti Grøtta Vetvik, Alexander Olsen, Iben Cornelia Keim Larsen, Mattias Linde, Erling Andreas Tronvik, Tore Wergeland Meisingset
Peer Reviewers Aynur Özge; Lanfranco Pellesi
  • Funders
  • Eurostars. The Eurostars Program is a joint initiative of EUREKA and the European Community.
  • Oslo Regional Research Fund
LATEST VERSION PUBLISHED 29 Aug 2025
https://doi.org/10.12688/f1000research.160063.2
Software Tool Article metrics
Revised
mimicINT: A workflow for microbe-host protein interaction inference
[version 2; peer review: 2 approved, 1 approved with reservations]
Sébastien A. Choteau, Kevin Maldonado, Aurélie Bergon, Marceau Cristianini, Mégane Boujeant, Lilian Drets, Christine Brun, Lionel Spinelli, Andreas Zanzoni
Peer Reviewers Ylva Ivarsson; Sobia Idrees; Leandro Simonetti
  • Funders
  • Excellence Initiative of Aix-Marseille University - A*MIDEX
  • Agence Nationale de la Recherche
  • Fondation pour la Recherche Médicale
  • European Union’s Horizon 2020 Research and Innovation Programme
LATEST VERSION PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.155657.2
Research Article metrics
Revised
Molecular docking and MD simulation approach to identify potential phytochemical lead molecule against triple negative breast cancer
[version 2; peer review: 1 approved, 2 approved with reservations]
Pranaya Sankaranarayanan, Dicky John Davis G, Abhinand PA, M Manikandan, Arabinda Ghosh
Peer Reviewers Shiek S S J Ahmed; Yutian Zou; Indiraleka Muthiah
  • Funder
  • Sri Ramachandra Institute of Higher Education and Research (Deemed to be University)
LATEST VERSION PUBLISHED 18 Mar 2025
https://doi.org/10.12688/f1000research.130618.2
Research Article metrics
Revised
In silico molecular docking and molecular dynamic simulation of agarwood compounds with molecular targets of Alzheimer’s disease 
[version 2; peer review: 3 approved, 1 not approved]
Phaniendra Alugoju, Vishwambar Vishnu Bhandare, Vishal S. Patil, Krishna Swamy V. K. D, Prem Kumar Borugadda, Tewin Tencomnao
Peer Reviewers Sailu Sarvagalla; Yassir Boulaamane and Iman Touati; Abdul Rajjak Shaikh; James Adams
  • Funder
  • Thailand Science Research and Innovation Fund Chulalongkorn University
LATEST VERSION PUBLISHED 16 Dec 2024
https://doi.org/10.12688/f1000research.131014.3
Software Tool Article metrics
Revised
RBP-Tar – a searchable database for experimental RBP binding sites
[version 3; peer review: 2 approved, 4 approved with reservations]
Katarina Gresova, Tomas Racek, Vlastimil Martinek, David Cechak, Radka Svobodova, Panagiotis Alexiou
Peer Reviewers Xiaoyong Pan; Clifford A Meyer; Michiel Stock; Eric Van Nostrand; M. J. Nishanth; Zhi-Ping Liu
  • Funders
  • ELIXIR-CZ
  • Ministry of Education, Youth and Sports of the Czech Republic
  • MEYS
  • Horizon europe
LATEST VERSION PUBLISHED 25 Nov 2024
https://doi.org/10.12688/f1000research.143633.3
Research Article metrics
Revised
Identification of compounds from natural Peruvian sources as potential inhibitors of SARS-CoV-2 Mpro mutations by virtual screening and computational simulations
[version 3; peer review: 2 approved]
Haruna Luz Barazorda-Ccahuana, Eymi Gladys Cárcamo Rodriguez, Angela Emperatriz Centeno-Lopez, Margot Paco-Chipana, Luis Daniel Goyzueta-Mamani, Miguel Angel Chavez-Fumagalli
Peer Reviewers Tushar Joshi; Mohammed Bouachrine
  • Funder
  • Universidad Catolica de Santa Maria de Arequipa
LATEST VERSION PUBLISHED 22 Nov 2024
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