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https://doi.org/10.12688/f1000research.170584.1
Research Article metrics AWAITING PEER REVIEW
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 1; peer review: awaiting peer review]
Alejandra Clavijo-Giraldo, Sandra Uribe Soto, Andrés Gómez-Palacio
Peer Reviewers Invited
  • Funder
  • This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
PUBLISHED 28 Oct 2025
https://doi.org/10.12688/f1000research.170680.1
Review metrics AWAITING PEER REVIEW
Integrating spatial omics with routine haematoxylin and eosin in formalin-fixed paraffin-embedded: a step-by-step clinical workflow
[version 1; peer review: awaiting peer review]
Nasar Alwahaibi
Peer Reviewers Invited
  • Funder
  • None
PUBLISHED 09 Oct 2025
https://doi.org/10.12688/f1000research.163212.2
Data Note metrics
Revised
CD4+ T-cell transcription factors as early predictors of phenoconversion in idiopathic rapid eye movement sleep behaviour disorder
[version 2; peer review: 2 approved]
Monica Pinoli, Michele Terzaghi, Franca Marino, Cristoforo Comi, Maurizio Versino, Marco Cosentino
Peer Reviewers Tommaso Schirinzi; Adawiya J. Haider
LATEST VERSION PUBLISHED 06 Oct 2025
https://doi.org/10.12688/f1000research.168987.1
Software Tool Article metrics AWAITING PEER REVIEW
StaggR: an interactive R/Shiny application for planning and visualizing staggered experimental protocols
[version 1; peer review: awaiting peer review]
Alex Michael Francette
Peer Reviewers Invited
  • Funder
  • Washington University in St. Louis
PUBLISHED 15 Sep 2025
https://doi.org/10.12688/f1000research.149807.2
Study Protocol metrics
Revised
Biofeedback therapy using Cerebri for the prevention of migraine attacks in adults with episodic migraine (BioCer): a randomized, wait-list controlled trial – the study protocol
[version 2; peer review: 2 approved]
Amalie Christine Poole, Anker Stubberud, Melanie Simpson, Lise Øie, Einar Tobias Vassbø Skalstad, Marte-Helene Bjørk, Espen Saxhaug Kristoffersen, Kjersti Grøtta Vetvik, Alexander Olsen, Iben Cornelia Keim Larsen, Mattias Linde, Erling Andreas Tronvik, Tore Wergeland Meisingset
Peer Reviewers Aynur Özge; Lanfranco Pellesi
  • Funders
  • Eurostars. The Eurostars Program is a joint initiative of EUREKA and the European Community.
  • Oslo Regional Research Fund
LATEST VERSION PUBLISHED 29 Aug 2025
https://doi.org/10.12688/f1000research.160063.2
Software Tool Article metrics
Revised
mimicINT: A workflow for microbe-host protein interaction inference
[version 2; peer review: 2 approved, 1 approved with reservations]
Sébastien A. Choteau, Kevin Maldonado, Aurélie Bergon, Marceau Cristianini, Mégane Boujeant, Lilian Drets, Christine Brun, Lionel Spinelli, Andreas Zanzoni
Peer Reviewers Ylva Ivarsson; Sobia Idrees; Leandro Simonetti
  • Funders
  • Excellence Initiative of Aix-Marseille University - A*MIDEX
  • Agence Nationale de la Recherche
  • Fondation pour la Recherche Médicale
  • European Union’s Horizon 2020 Research and Innovation Programme
LATEST VERSION PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.155657.2
Research Article metrics
Revised
Molecular docking and MD simulation approach to identify potential phytochemical lead molecule against triple negative breast cancer
[version 2; peer review: 1 approved, 2 approved with reservations]
Pranaya Sankaranarayanan, Dicky John Davis G, Abhinand PA, M Manikandan, Arabinda Ghosh
Peer Reviewers Shiek S S J Ahmed; Yutian Zou; Indiraleka Muthiah
  • Funder
  • Sri Ramachandra Institute of Higher Education and Research (Deemed to be University)
LATEST VERSION PUBLISHED 18 Mar 2025
https://doi.org/10.12688/f1000research.130618.2
Research Article metrics
Revised
In silico molecular docking and molecular dynamic simulation of agarwood compounds with molecular targets of Alzheimer’s disease 
[version 2; peer review: 3 approved, 1 not approved]
Phaniendra Alugoju, Vishwambar Vishnu Bhandare, Vishal S. Patil, Krishna Swamy V. K. D, Prem Kumar Borugadda, Tewin Tencomnao
Peer Reviewers Sailu Sarvagalla; Yassir Boulaamane and Iman Touati; Abdul Rajjak Shaikh; James Adams
  • Funder
  • Thailand Science Research and Innovation Fund Chulalongkorn University
LATEST VERSION PUBLISHED 16 Dec 2024
https://doi.org/10.12688/f1000research.131014.3
Software Tool Article metrics
Revised
RBP-Tar – a searchable database for experimental RBP binding sites
[version 3; peer review: 2 approved, 4 approved with reservations]
Katarina Gresova, Tomas Racek, Vlastimil Martinek, David Cechak, Radka Svobodova, Panagiotis Alexiou
Peer Reviewers Xiaoyong Pan; Clifford A Meyer; Michiel Stock; Eric Van Nostrand; M. J. Nishanth; Zhi-Ping Liu
  • Funders
  • ELIXIR-CZ
  • Ministry of Education, Youth and Sports of the Czech Republic
  • MEYS
  • Horizon europe
LATEST VERSION PUBLISHED 25 Nov 2024
https://doi.org/10.12688/f1000research.143633.3
Research Article metrics
Revised
Identification of compounds from natural Peruvian sources as potential inhibitors of SARS-CoV-2 Mpro mutations by virtual screening and computational simulations
[version 3; peer review: 2 approved]
Haruna Luz Barazorda-Ccahuana, Eymi Gladys Cárcamo Rodriguez, Angela Emperatriz Centeno-Lopez, Margot Paco-Chipana, Luis Daniel Goyzueta-Mamani, Miguel Angel Chavez-Fumagalli
Peer Reviewers Tushar Joshi; Mohammed Bouachrine
  • Funder
  • Universidad Catolica de Santa Maria de Arequipa
LATEST VERSION PUBLISHED 22 Nov 2024
https://doi.org/10.12688/f1000research.157679.1
Research Article metrics
Feather keratin in Pavo cristatus: A tentative structure
[version 1; peer review: 1 approved]
Peter Russ, Helmut O.K. Kirchner, Herwig Peterlik, Ingrid M. Weiss
Peer Reviewers Boaz Pokroy
  • Funders
  • Carl-Zeiss-Stiftung
  • Universität Stuttgart
PUBLISHED 07 Nov 2024
https://doi.org/10.12688/f1000research.157160.1
Software Tool Article metrics
BEpipeR: a user-friendly, flexible, and scalable data synthesis pipeline for the Biodiversity Exploratories and other research consortia
[version 1; peer review: 1 approved with reservations, 1 not approved]
Marcel Glück, Oliver Bossdorf, Henri A. Thomassen
Peer Reviewers Elliot Gould; Matthias Grenié
  • Funder
  • Deutsche Forschungsgemeinschaft
PUBLISHED 24 Oct 2024
https://doi.org/10.12688/f1000research.73999.3
Research Article metrics
Revised
A computational biology approach for the identification of potential SARS-CoV-2 main protease inhibitors from natural essential oil compounds.
[version 3; peer review: 2 approved, 1 approved with reservations]
Rizone Al Hasib, Md. Chayan Ali, Md. Shahedur Rahman, Md. Mafizur Rahman, Fee Faysal Ahmed, Md. Abdullah Al Mashud, Md. Azizul Islam, Mohammad Abu Hena Mostofa Jamal
Peer Reviewers Thi Thanh Binh Nguyen; Rituraj Purohit; Behrooz sadeghi kalani
  • Funder
  • Ministry of Science and Technology, Government of the People’s Republic of Bangladesh
LATEST VERSION PUBLISHED 07 Oct 2024
https://doi.org/10.12688/f1000research.131508.2
Research Article metrics
Revised
In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV-2 S-glycoprotein and the ACE2 receptor
[version 2; peer review: 1 approved, 2 approved with reservations]
Dania Hussein, Abdullah Almatrafi, Mohammed Gomaa, AlAnood Alhowsawi, Sarah Almustafa, Hadi Alsaihaty, Manar Alghamdi
Peer Reviewers Prateek Kumar; Dr Manne Munikumar; Vipul Kumar and Vikas Tiwari
LATEST VERSION PUBLISHED 26 Jul 2024
https://doi.org/10.12688/f1000research.133724.2
Opinion Article metrics
Revised
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
[version 2; peer review: 3 approved]
Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Physilia Ying Shi Chua, Valeria Di Cola, Katharina F. Heil, Graham M. Hughes, Lars S. Jermiin, Matúš Kalaš, Jerry Lanfear, Evangelos Pafilis, Patricia M. Palagi, Aristotelis C. Papageorgiou, Joana Paupério, Fotis Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldón
Peer Reviewers Patrick Comer; Abigail Benson and Stephen Formel; Cher FY Chow
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.111382.3
Research Article metrics
Revised
Maxillary first premolar shape (and not size) as an indicator of sexual dimorphism: A 2D geomorphometric study
[version 3; peer review: 2 approved, 1 not approved]
Srikant Natarajan, Junaid Ahmed, Nidhin Philip Jose, Shravan Shetty
Peer Reviewers Aman Chowdhry; Julia Aramendi; Choy Ker Woon
  • Funder
  • Science and Engineering Research Board
LATEST VERSION PUBLISHED 16 Feb 2024
https://doi.org/10.12688/f1000research.127061.2
Research Article metrics
Revised
Understanding the high electronic quantum similarity of a series of ligands used as inhibitors of the SARS-CoV-2 virus by molecular mechanics and density functional theory approaches
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Ahmed Metwaly; Ramon Carbó-Dorca; Kiran Bharat Lokhande; Vikram Dalal; Mohnad Abdalla
  • Funder
  • Fundación Universitaria Tecnológico Comfenalco
LATEST VERSION PUBLISHED 06 Feb 2024
https://doi.org/10.12688/f1000research.138059.1
Method Article metrics
A tutorial hub for realising the potential of tools within the SPARC ecosystem
[version 1; peer review: 2 approved with reservations]
Niloofar Shahidi, Omkar Athavale, Yuda Munarko, Mathias Roesler, Kenneth Tran
Peer Reviewers Bhavesh Patel; Andrey Andreev
PUBLISHED 08 Jan 2024
https://doi.org/10.12688/f1000research.143062.1
Software Tool Article metrics
COverlap: a Fiji toolset for the 3D co-localization of two fluorescent nuclear markers in confocal images
[version 1; peer review: 3 approved with reservations]
Mélodie Ambroset, Bruno Bontempi, Jean-Luc Morel
Peer Reviewers Thomas Boudier; Jean-Karim Heriche; Bijie Bai
  • Funders
  • Agence Nationale de la Recherche
  • Université de Bordeaux
  • Centre National de la Recherche Scientifique
  • Centre National d’Etudes Spatiales
PUBLISHED 03 Jan 2024
https://doi.org/10.12688/f1000research.123550.3
Research Article metrics
Revised
New findings on ligand series used as SARS-CoV-2 virus inhibitors within the frameworks of molecular docking, molecular quantum similarity and chemical reactivity indices
[version 3; peer review: 1 approved, 1 approved with reservations]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Truong Tan Trung; Yogesh Kumar
  • Funder
  • UNISINU-2022-2
LATEST VERSION PUBLISHED 11 Dec 2023
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