Cheminformatics

Cheminformatics

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1-20 of 70 ARTICLES
Featured Article
https://doi.org/10.12688/f1000research.52192.1
Editorial metrics NOT PEER REVIEWED
Expanding the Chemical Information Science gateway
[version 1; peer review: not peer reviewed]
PUBLISHED 16 Apr 2021
https://doi.org/10.12688/f1000research.161261.2
Research Article metrics
Revised
Nat-UV DB: A Natural Products Database Underlying of Veracruz-Mexico
[version 2; peer review: 3 approved]
Peer Reviewers Virginia Flores-Morales; David J Newman; Kathia Maria Honorio
LATEST VERSION PUBLISHED 24 Apr 2025
https://doi.org/10.12688/f1000research.160617.1
Software Tool Article metrics
Abstract Sifter version 8: Focus on the chemical literature
[version 1; peer review: 1 approved with reservations]
Peer Reviewers Hunter N B Moseley
  • Funder
  • U.S. Environmental Protection Agency
PUBLISHED 04 Mar 2025
https://doi.org/10.12688/f1000research.130618.2
Research Article metrics
Revised
In silico molecular docking and molecular dynamic simulation of agarwood compounds with molecular targets of Alzheimer’s disease 
[version 2; peer review: 3 approved, 1 not approved]
Peer Reviewers Sailu Sarvagalla; Yassir Boulaamane and Iman Touati; Abdul Rajjak Shaikh; James Adams
  • Funder
  • Thailand Science Research and Innovation Fund Chulalongkorn University
LATEST VERSION PUBLISHED 16 Dec 2024
https://doi.org/10.12688/f1000research.143633.3
Research Article metrics
Revised
Identification of compounds from natural Peruvian sources as potential inhibitors of SARS-CoV-2 Mpro mutations by virtual screening and computational simulations
[version 3; peer review: 2 approved]
Peer Reviewers Tushar Joshi; Mohammed Bouachrine
  • Funder
  • Universidad Catolica de Santa Maria de Arequipa
LATEST VERSION PUBLISHED 22 Nov 2024
https://doi.org/10.12688/f1000research.131508.2
Research Article metrics
Revised
In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV-2 S-glycoprotein and the ACE2 receptor
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Prateek Kumar; Dr Manne Munikumar; Vipul Kumar and Vikas Tiwari
LATEST VERSION PUBLISHED 26 Jul 2024
https://doi.org/10.12688/f1000research.134956.2
Research Article metrics
Revised
In silico screening for potential inhibitors from the phytocompounds of Carica papaya against Zika virus NS5 protein
[version 2; peer review: 3 approved]
Peer Reviewers Arumugam Vijaya Anand; Luis Marquez-Dominguez; Tiratha Raj Singh
  • Funder
  • Second Century Fund (C2F) Postdoctoral Fellowship, Chulalongkorn University
LATEST VERSION PUBLISHED 25 Jun 2024
https://doi.org/10.12688/f1000research.130936.2
Research Article metrics
Revised
Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning
[version 2; peer review: 3 approved, 2 approved with reservations]
Peer Reviewers Ka-Chun Wong; Guohua Wang; Jianmin Wang; Qifeng Bai; Aslıhan Aycan Tanrıverdi
  • Funder
  • King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA)
LATEST VERSION PUBLISHED 20 Feb 2024
https://doi.org/10.12688/f1000research.134682.3
Research Article metrics
Revised
Levels of polycyclic aromatic hydrocarbon in the soil around typical automobile repair workshops in Nigeria
[version 3; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Daniel O. Omokpariola; Akanimo N. Ekanem; Loai Aljerf
LATEST VERSION PUBLISHED 12 Feb 2024
https://doi.org/10.12688/f1000research.127347.3
Research Article metrics
Revised
Molecular docking, ADMET profiling of gallic acid and its derivatives (N-alkyl gallamide) as apoptosis agent of breast cancer MCF-7 Cells
[version 3; peer review: 2 approved]
Peer Reviewers Damilohun Samuel Metibemu; Naveen Dhingra
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
LATEST VERSION PUBLISHED 08 Feb 2024
https://doi.org/10.12688/f1000research.127061.2
Research Article metrics
Revised
Understanding the high electronic quantum similarity of a series of ligands used as inhibitors of the SARS-CoV-2 virus by molecular mechanics and density functional theory approaches
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Peer Reviewers Ahmed Metwaly; Ramon Carbó-Dorca; Kiran Bharat Lokhande; Vikram Dalal; Mohnad Abdalla
  • Funder
  • Fundación Universitaria Tecnológico Comfenalco
LATEST VERSION PUBLISHED 06 Feb 2024
https://doi.org/10.12688/f1000research.123550.3
Research Article metrics
Revised
New findings on ligand series used as SARS-CoV-2 virus inhibitors within the frameworks of molecular docking, molecular quantum similarity and chemical reactivity indices
[version 3; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Truong Tan Trung; Yogesh Kumar
  • Funder
  • UNISINU-2022-2
LATEST VERSION PUBLISHED 11 Dec 2023
https://doi.org/10.12688/f1000research.131690.2
Research Article metrics
Revised
Evaluation of paraoxonase I and hemoglobin levels in farmers and agricultural workers in relation to organophosphorus and carbamate levels in their blood and urine samples: A cross sectional study
[version 2; peer review: 2 approved]
Peer Reviewers Eugenio Vilanova; Shruthi Prabhakar
LATEST VERSION PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.138510.1
Research Article metrics
In silico molecular docking, ADME study and synthesis of new 1,3-diazetidin-2-one derivatives with high anti-proliferative activity
[version 1; peer review: 1 approved, 1 not approved]
Peer Reviewers Sujeet Kumar; Muhammad Usman Khan
PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.129943.3
Research Article metrics
Revised
Computer-aided drug design approaches applied to screen natural product’s structural analogs targeting arginase in Leishmania spp
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Francisco Centeno; Anupam Nath Jha; Rubens L. Monte-Neto and Alessandra Sousa
  • Funder
  • Universidad Católica de Santa Maria
LATEST VERSION PUBLISHED 13 Jul 2023
https://doi.org/10.12688/f1000research.133839.1
Research Article metrics
Pharmacokinetic and pharmacodynamic profiling of compounds similar to paracetamol from zinc database: an in silico analysis
[version 1; peer review: 1 approved with reservations]
Peer Reviewers Hui Wang and Shan Jin
PUBLISHED 21 Jun 2023
https://doi.org/10.12688/f1000research.129663.1
Research Article metrics
Virtual screening for chemical analogues similar to phytochemicals that inhibit aldose reductase in the development of diabetic microvascular complications
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Ajmer Singh Grewal; JAINEY JAMES P
PUBLISHED 21 Mar 2023
https://doi.org/10.12688/f1000research.130024.1
Research Article metrics
Identification of potential compounds for the management of multidrug-resistant tuberculosis using computational methods
[version 1; peer review: 2 not approved]
Peer Reviewers Manish Dwivedi; Grace Mugumbate
PUBLISHED 17 Mar 2023
https://doi.org/10.12688/f1000research.127126.1
Data Note metrics
The computationally predicted drug-likeness, pharmacokinetics properties, medicinal chemistry parameters, and toxicity properties of Cucurbita maxima compounds.
[version 1; peer review: 2 approved]
Peer Reviewers Edgar López-López; Gurudutt Dubey
PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.73420.2
Software Tool Article metrics
Revised
PDBrt: A free database of complexes with measured drug-target residence time
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Wiesław Nowak; Marian Novotny
  • Funders
  • European Social Fund
  • Polish National Science Centre
  • Silesian University of Technology
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.124160.1
Research Article metrics
Polypharmacological drug design opportunities against Parkinson's disease
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Giulio Rastelli; Yassir Boulaamane and Iman Touati
PUBLISHED 17 Oct 2022
1-20 of 70 ARTICLES
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