Genome Sequencing

Genome Sequencing

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1-20 of 36 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.160546.2
Genome Note metrics
Revised
The complete genome sequences of Bacillus velezensis B26: a promising biocontrol agent and biofertilizer
[version 2; peer review: 3 approved]
Venkatesh Kamath B, Sandeep Mallya, Subrahmanyam Volety Mallikarjuna, Kiran Kumar Kolathur
Peer Reviewers Saranya Nallusamy; Surajit Basak; Diego Sauka
LATEST VERSION PUBLISHED 08 Jul 2025
https://doi.org/10.12688/f1000research.161461.2
Genome Note metrics
Revised
The genome sequence of Tethysbaena scabra (Pretus, 1991), the first known in the peracarid crustacean order Thermosbaenacea.
[version 2; peer review: 1 approved, 1 approved with reservations]
Joan Pons, Karen D. Schöninger-Almaraz, Laura Triginer-Llabrés, Carlos Juan, Damià Jaume, José A. Jurado-Rivera
Peer Reviewers Pascal Angst; Martin Schwentner
  • Funders
  • Govern de les Illes Balears
  • Institut d'Estudis Catalans
LATEST VERSION PUBLISHED 04 Jul 2025
https://doi.org/10.12688/f1000research.123591.2
Data Note metrics
Revised
Squalomix: shark and ray genome analysis consortium and its data sharing platform
[version 2; peer review: 2 approved]
Osamu Nishimura, John Rozewicki, Kazuaki Yamaguchi, Kaori Tatsumi, Yuta Ohishi, Tazro Ohta, Masaru Yagura, Taiki Niwa, Chiharu Tanegashima, Akinori Teramura, Shotaro Hirase, Akane Kawaguchi, Milton Tan, Salvatore D'Aniello, Filipe Castro, André Machado, Mitsumasa Koyanagi, Akihisa Terakita, Ryo Misawa, Masayuki Horie, Junna Kawasaki, Takashi Asahida, Atsuko Yamaguchi, Kiyomi Murakumo, Rui Matsumoto, Iker Irisarri, Norio Miyamoto, Atsushi Toyoda, Sho Tanaka, Tatsuya Sakamoto, Yasuko Semba, Shinya Yamauchi, Kazuyuki Yamada, Kiyonori Nishida, Itsuki Kiyatake, Keiichi Sato, Susumu Hyodo, Mitsutaka Kadota, Yoshinobu Uno, Shigehiro Kuraku
Peer Reviewers Mélanie Debiais-Thibaud; Dan Larhammar and David Lagman
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • National Institute of Genetics
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 08 May 2025
https://doi.org/10.12688/f1000research.73066.2
Genome Note metrics
Revised
A draft genome sequence of the common, or spectacled caiman Caiman crocodilus
[version 2; peer review: 1 approved, 1 not approved]
Kenichi Okamoto, Nichole Dopkins, Elias Kinfu
Peer Reviewers Steven Salzberg; Marc Tollis
  • Funder
  • University of St. Thomas CAS Startup Funds
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.121402.2
Genome Note metrics
Revised
Whole genome sequencing data of Candida krusei, the pathogen causing Candidaemia, from Department of Parasitology Culture Collection, Faculty of Medicine Universitas Indonesia
[version 2; peer review: 2 approved]
Fadilah Fadilah, Robiatul Adawiyah, Retno Wahyuningsih, Anna Rozaliyani, Ayu Eka Fatril, Rafika Indah Paramita, Linda Erlina, Khaerunissa Anbar Istiadi
Peer Reviewers Xuepeng Sun; Atanu Banerjee
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 29 Mar 2023
https://doi.org/10.12688/f1000research.130734.1
Genome Note metrics
The first genome sequence of Anopheles squamous from Macha, Zambia
[version 1; peer review: 2 approved]
Valerie T. Nguyen, Travis C. Collier, Sangwoo Seok, Xiaodi Wang, Monicah M. Mburu, Limonty Simubali, Mary E. Gebhardt, Douglas E. Norris, Yoosook Lee
Peer Reviewers Megan A. Riddin; Tara Roth
  • Funders
  • Department of Entomology and Nematology, University of Florida
  • University of Florida
  • Johns Hopkins Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health
  • National Institutes of Health
  • College of Agricultural and Life Sciences, University of Florida
  • Bloomberg Philanthropies
PUBLISHED 24 Mar 2023
https://doi.org/10.12688/f1000research.124719.1
Genome Note metrics
Inference of a genome-wide protein-coding gene set of the inshore hagfish Eptatretus burgeri
[version 1; peer review: 2 approved with reservations]
Osamu Nishimura, Kazuaki Yamaguchi, Yuichiro Hara, Kaori Tatsumi, Jeramiah J Smith, Mitsutaka Kadota, Shigehiro Kuraku
Peer Reviewers Vincent Laudet; Daniel Ocampo Daza
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • Japan Society for the Promotion of Science
  • National Science Foundation
PUBLISHED 08 Nov 2022
https://doi.org/10.12688/f1000research.121947.1
Genome Note metrics
Identification of the exuviae of larva from Teinopalpus aureus Mell, 1923 using the complete mitochondrial genome
[version 1; peer review: 2 approved with reservations]
Lei-Lei Liu, Li-Hua Zhang, Guo-Hang Weng, Wei-Qin Wang, Xi-Cheng Gong, Shan-Biao Wang, Shu-Sheng Zhang
Peer Reviewers Chang-Bae Kim; Xue-yan Li
  • Funder
  • Zhejiang Normal University
PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.124450.1
Genome Note metrics
The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
[version 1; peer review: 1 approved, 1 approved with reservations]
Yongxin Miao, Yidi Li, Yaqing Mei, Cheng Chen, Liling Sun, Baowei Zhang, Hui Wang
Peer Reviewers Chaochao Hu; Adrian Marciszak
  • Funder
  • Dabie Mountains Biodiversity Comprehensive Scientific Investigation project 3
PUBLISHED 26 Sep 2022
https://doi.org/10.12688/f1000research.121637.1
Genome Note metrics
The complete genome sequence of elite bread wheat cultivar, “Sonmez”
[version 1; peer review: 3 approved]
Bala Ani Akpinar, Philippe Leroy, Nathan Watson-Haigh, Ute Baumann, Valerie Barbe, Hikmet Budak
Peer Reviewers Søren K. Rasmussen; Zahide Neslihan Öztürk Gökçe; Gabriel Doredo Perez
  • Funder
  • Budak Family Foundation (BFF)
PUBLISHED 06 Jun 2022
https://doi.org/10.12688/f1000research.121706.1
Genome Note metrics
Genome of the lepidopleurid chiton Hanleya hanleyi (Mollusca, Polyplacophora)
[version 1; peer review: 2 approved]
Rebecca M. Varney, Meghan K. Yap-Chiongco, Nina T. Mikkelsen, Kevin M. Kocot
Peer Reviewers Vanessa L. Gonzalez; Samuel Abalde
  • Funders
  • The Norwegian Biodiversity Information Centre
  • National Science Foundation
PUBLISHED 23 May 2022
https://doi.org/10.12688/f1000research.108549.1
Genome Note metrics PEER REVIEW DISCONTINUED
The complete genome sequences of Erythroxylum coca and Erythroxylum novogranatense
[version 1; peer review: peer review discontinued]
Dawson M. White, Lyndel Meinhardt, Bryan Bailey, Stacy Pirro
Peer Reviewers Invited
  • Funder
  • IRIDIAN GENOMES
PUBLISHED 25 Apr 2022
https://doi.org/10.12688/f1000research.110799.1
Genome Note metrics
The complete mitochondrial genome sequencing of the Asian lesser white-toothed shrew (Crocidura shantungensis Miller, 1901; Eulipotyphla: Soricidae) from Jeju of Korea
[version 1; peer review: 2 approved with reservations]
Seo-Jin Lee, Dong-Hee Kim, Hang Lee
Peer Reviewers Rogelio Rosas-Valdez; Sadık Demirtaş
  • Funder
  • National Research Foundation of Korea
PUBLISHED 22 Apr 2022
https://doi.org/10.12688/f1000research.108415.1
Genome Note metrics
The complete mitogenome sequence of clam (Corbicula fluminea)
[version 1; peer review: 1 approved, 1 approved with reservations]
Qing Luo, Jie Pi, Yangxin Tang, Cong Zeng, Deliang Li
Peer Reviewers Xiaotong Wang; Arsalan Emami-Khoyi
  • Funders
  • Hunan Provincial Modern Agricultural Research System
  • National Natural Science Foundation of China
  • Hunan Provincial Scientific and Technological Program
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.55301.2
Research Article metrics
Revised
A whole genome atlas of 81 Psilocybe genomes as a resource for psilocybin production.
[version 2; peer review: 1 approved with reservations, 1 not approved]
Kevin McKernan, Liam Kane, Yvonne Helbert, Lei Zhang, Nathan Houde, Stephen McLaughlin
Peer Reviewers Bryn T M Dentinger and Alexander Bradshaw; Sebastiaan Werten
LATEST VERSION PUBLISHED 17 Dec 2021
https://doi.org/10.12688/f1000research.74169.1
Genome Note metrics
Isolation and sequencing of three RB49-like bacteriophages infecting O antigen-producing E. coli strains
[version 1; peer review: 1 approved, 1 approved with reservations]
Alexander Efimov, Eugene Kulikov, Alla Golomidova, Ilya Belalov, Vladislav Babenko, Andrey Letarov
Peer Reviewers Marcin Los; Mikael Skurnik
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation, WCSC
PUBLISHED 03 Nov 2021
https://doi.org/10.12688/f1000research.73724.1
Research Article metrics
Detection of CYP2C19*2_ allele among Helicobacter pylori -infected patients in two tertiary hospitals of Khartoum, Sudan, 2019
[version 1; peer review: 1 approved, 1 approved with reservations]
Azza Abbas, Sawazen Malik, Bushra Sulieman, Khalid Enan
Peer Reviewers Mitsushige Sugimoto; Marek Mirowski
PUBLISHED 18 Oct 2021
https://doi.org/10.12688/f1000research.51613.2
Data Note metrics
Revised
A draft reference assembly of the Psilocybe cubensis genome
[version 2; peer review: 2 approved]
Kevin McKernan, Liam T. Kane, Seth Crawford, Chen-Shan Chin, Aaron Trippe, Stephen McLaughlin
Peer Reviewers Jason C. Slot; Anders Goncalves da Silva and Philippe Henry
LATEST VERSION PUBLISHED 15 Jun 2021
https://doi.org/10.12688/f1000research.25148.2
Research Article metrics
Revised
First draft genome assembly of the desert locust, Schistocerca gregaria
[version 2; peer review: 3 approved]
Heleen Verlinden, Lieven Sterck, Jia Li, Zhen Li, Anna Yssel, Yannick Gansemans, Rik Verdonck, Michiel Holtof, Hojun Song, Spencer T. Behmer, Gregory A. Sword, Tom Matheson, Swidbert R. Ott, Dieter Deforce, Filip Van Nieuwerburgh, Yves Van de Peer, Jozef Vanden Broeck
Peer Reviewers Uwe Homberg; Surya Saha; Joshua B. Benoit
  • Funders
  • U.S. Department of Agriculture
  • University of Pretoria
  • KU Leuven
  • Fonds Wetenschappelijk Onderzoek
  • Universiteit Gent
  • Biotechnology and Biological Sciences Research Council
  • National Science Foundation
LATEST VERSION PUBLISHED 21 May 2021
https://doi.org/10.12688/f1000research.27309.1
Data Note metrics
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
1-20 of 36 ARTICLES
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