Global Open Data for Agriculture and Nutrition

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21-40 of 45 ARTICLES
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https://doi.org/10.12688/f1000research.11179.2
Research Article metrics
Revised
Improving agricultural knowledge management: The AgTrials experience
[version 2; peer review: 2 approved]
Glenn Hyman, Herlin Espinosa, Paola Camargo, David Abreu, Medha Devare, Elizabeth Arnaud, Cheryl Porter, Leroy Mwanzia, Kai Sonder, Sibiry Traore
Peer Reviewers Anne-Françoise Adam-Blondon; Ruth Bastow
  • Funders
  • United States Agency for International Development
  • CGIAR Fund
LATEST VERSION PUBLISHED 09 Oct 2017
https://doi.org/10.12688/f1000research.12216.1
Research Article metrics
Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity
[version 1; peer review: 2 approved]
Michael P. Heaton, Timothy P.L. Smith, Bradley A. Freking, Aspen M. Workman, Gary L. Bennett, Jacky K. Carnahan, Theodore S. Kalbfleisch
Peer Reviewers Christine Couldrey; Eyal Seroussi
  • Funder
  • U.S. Department of Agriculture
PUBLISHED 02 Aug 2017
https://doi.org/10.12688/f1000research.11859.2
Data Note metrics
Revised
Draft genome sequencing of the sugarcane hybrid SP80-3280
[version 2; peer review: 2 approved]
Diego Mauricio Riaño-Pachón, Lucia Mattiello
Peer Reviewers Jason Miller; Chakravarthi Mohan
  • Funders
  • Centro Nacional de Processamento de Alto Desempenho em São Paulo
  • Brazilian Bioethanol Science and Technology Laboratory
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
LATEST VERSION PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11629.1
Data Note metrics
Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid
[version 1; peer review: 2 approved]
Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Manolito G. Torralba, Kelvin J. Moncera, Karen Beeri, Karrie Goglin, Timothy B. Stockwell, Granger G. Sutton, Reed S. Shabman
Peer Reviewers Paulo Arruda; Jeremy R. Shearman
  • Funder
  • U.S. Department of Homeland Security
PUBLISHED 17 May 2017
https://doi.org/10.12688/f1000research.11638.1
Method Article metrics
Semantics for interoperability of distributed data and models: Foundations for better-connected information
[version 1; peer review: 2 approved with reservations]
Ferdinando Villa, Stefano Balbi, Ioannis N. Athanasiadis, Caterina Caracciolo
Peer Reviewers Carol Goble; Pier Luigi Buttigieg
  • Funders
  • Horizon 2020
  • Ecosystem Services for Poverty Alleviation
  • National Science Foundation
PUBLISHED 17 May 2017
https://doi.org/10.12688/f1000research.10041.1
Software Tool Article metrics
Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data
[version 1; peer review: 2 approved, 1 approved with reservations]
Delasa Aghamirzaie, Karthik Raja Velmurugan, Shuchi Wu, Doaa Altarawy, Lenwood S. Heath, Ruth Grene
Peer Reviewers Nicholas J. Provart; Asa Ben-Hur; Sakiko Okumoto
  • Funder
  • National Science Foundation
PUBLISHED 28 Mar 2017
https://doi.org/10.12688/f1000research.10497.1
Opinion Article metrics
Prima facie reasons to question enclosed intellectual property regimes and favor open-source regimes for germplasm
[version 1; peer review: 3 approved, 1 approved with reservations]
Madeleine-Thérèse Halpert, M. Jahi Chappell
Peer Reviewers Sheryl D. Breen; William F. Tracy; Sue Farran; Guntra A. Aistara and Ana Ruth Martinez Rizo
PUBLISHED 17 Mar 2017
https://doi.org/10.12688/f1000research.7312.2
Research Article metrics
Revised
An adaptable toolkit to assess commercial fishery costs and benefits related to marine protected area network design
[version 2; peer review: 2 approved]
Rémi M. Daigle, Cristián J. Monaco, Ashley K. Elgin
Peer Reviewers Pedro Peres-Neto; Marco Andrello
LATEST VERSION PUBLISHED 22 Feb 2017
https://doi.org/10.12688/f1000research.10443.1
Method Article metrics
ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services
[version 1; peer review: 1 approved, 2 approved with reservations]
Espen Mikal Robertsen, Hubert Denise, Alex Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen
Peer Reviewers Marla I. Trindade and Leonardo van Zyl; Takashi Gojobori; Anders Blomberg
  • Funders
  • ELIXIR
  • EMBL-EBI
  • Universitetet i Tromsø
PUBLISHED 23 Jan 2017
https://doi.org/10.12688/f1000research.8935.3
Software Tool Article metrics
Revised
Bringing your tools to CyVerse Discovery Environment using Docker
[version 3; peer review: 3 approved]
Upendra Kumar Devisetty, Kathleen Kennedy, Paul Sarando, Nirav Merchant, Eric Lyons
Peer Reviewers Steven B Cannon; Thomas S. B. Schmidt; Robert Cannon
LATEST VERSION PUBLISHED 05 Dec 2016
https://doi.org/10.12688/f1000research.9682.1
Software Tool Article metrics
CELL5M: A geospatial database of agricultural indicators for Africa South of the Sahara
[version 1; peer review: 2 approved]
Jawoo Koo, Cindy M. Cox, Melanie Bacou, Carlo Azzarri, Zhe Guo, Ulrike Wood-Sichra, Queenie Gong, Liangzhi You
Peer Reviewers Paul West and Peder Engstrom; Katharina Waha
PUBLISHED 10 Oct 2016
https://doi.org/10.12688/f1000research.9254.2
Research Article metrics
Revised
Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension
[version 2; peer review: 2 approved]
Michael P. Heaton, Timothy P.L. Smith, Jacky K. Carnahan, Veronica Basnayake, Jiansheng Qiu, Barry Simpson, Theodore S. Kalbfleisch
Peer Reviewers Joseph M. Neary; Matthew C. McClure
LATEST VERSION PUBLISHED 05 Oct 2016
https://doi.org/10.12688/f1000research.8657.2
Research Article metrics
Revised
Priority regions for research on dryland cereals and legumes
[version 2; peer review: 2 approved]
Glenn Hyman, Elizabeth Barona, Chandrashekhar Biradar, Edward Guevara, John Dixon, Steve Beebe, Silvia Elena Castano, Tunrayo Alabi, Murali Krishna Gumma, Shoba Sivasankar, Ovidio Rivera, Herlin Espinosa, Jorge Cardona
Peer Reviewers Jeffrey D. Ehlers; Liangzhi You
LATEST VERSION PUBLISHED 07 Jul 2016
https://doi.org/10.12688/f1000research.6009.2
Research Article metrics
Revised
The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands
[version 2; peer review: 2 approved, 1 approved with reservations]
Lars Eijssen, Chris T. Evelo, Ruben Kok, Barend Mons, Rob W.W. Hooft, and the other founding members of DTL Data (see Acknowledgements)
Peer Reviewers Steffi Suhr; Karin Verspoor; Bryn Williams-Jones
LATEST VERSION PUBLISHED 06 Jan 2016
https://doi.org/10.12688/f1000research.7559.1
Opinion Article metrics
The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects
[version 1; peer review: 2 approved, 1 approved with reservations]
Alexie Papanicolaou
Peer Reviewers Stephen Richards; John W. Davey; Ian Holmes
PUBLISHED 05 Jan 2016
https://doi.org/10.12688/f1000research.7340.1
Research Article metrics
World Health Organization estimates of the global and regional disease burden of four foodborne chemical toxins, 2010: a data synthesis
[version 1; peer review: 2 approved, 1 approved with reservations]
Herman Gibb, Brecht Devleesschauwer, P. Michael Bolger, Felicia Wu, Janine Ezendam, Julie Cliff, Marco Zeilmaker, Philippe Verger, John Pitt, Janis Baines, Gabriel Adegoke, Reza Afshari, Yan Liu, Bas Bokkers, Henk van Loveren, Marcel Mengelers, Esther Brandon, Arie H. Havelaar, David Bellinger
Peer Reviewers Jonathan M. Spergel; George M. Gray; Mary A Fox
PUBLISHED 03 Dec 2015
https://doi.org/10.12688/f1000research.6848.2
Software Tool Article metrics
Revised
Discovering, Indexing and Interlinking Information Resources
[version 2; peer review: 3 approved]
Fabrizio Celli, Johannes Keizer, Yves Jaques, Stasinos Konstantopoulos, Dušan Vudragović
Peer Reviewers Paolo Missier; Kei Kurakawa; Leonidas Papachristopoulos
LATEST VERSION PUBLISHED 17 Nov 2015
https://doi.org/10.12688/f1000research.6617.2
Research Article metrics
Revised
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut
[version 2; peer review: 3 approved]
Sandeep Chakraborty, Monica Britton, Jill Wegrzyn, Timothy Butterfield, Pedro José Martínez-García, Russell L. Reagan, Basuthkar J. Rao, Charles A. Leslie, Mallikarjuna Aradhaya, David Neale, Keith Woeste, Abhaya M. Dandekar
Peer Reviewers Varodom Charoensawan; Michael I. Love; Binay Panda
LATEST VERSION PUBLISHED 06 Nov 2015
https://doi.org/10.12688/f1000research.6150.2
Opinion Article metrics
Revised
Digital teaching tools and global learning communities
[version 2; peer review: 2 approved]
Mary Williams, Patti Lockhart, Cathie Martin
Peer Reviewers Claire Hemingway; Mirza Hasanuzzaman
LATEST VERSION PUBLISHED 20 Jul 2015
https://doi.org/10.12688/f1000research.5802.2
Research Article metrics
Revised
The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens
[version 2; peer review: 2 approved, 1 approved with reservations]
Sandeep Chakraborty, My Phu, Tâmara Prado de Morais, Rafael Nascimento, Luiz Ricardo Goulart, Basuthkar J. Rao, Bjarni Asgeirsson, Abhaya M. Dandekar
Peer Reviewers Jean-Marc Berjeaud; Autar Mattoo and Ravinder Goyal; Kevan Hartshorn
LATEST VERSION PUBLISHED 16 Jun 2015
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