All Research Articles

181-200 of 638 ARTICLES
https://doi.org/10.12688/f1000research.26872.2
Software Tool Article metrics
Revised
Fiji plugins for qualitative image annotations: routine analysis and application to image classification
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Jan Eglinger; Christian Tischer and Aliaksandr Halavatyi; Elisabet Teixido
  • Funder
  • Horizon 2020
LATEST VERSION PUBLISHED 12 Feb 2021
https://doi.org/10.12688/f1000research.26848.2
Software Tool Article metrics
Revised
CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline
[version 2; peer review: 2 approved]
Peer Reviewers Soohyun Lee; Sushant Patil
LATEST VERSION PUBLISHED 10 Feb 2021
https://doi.org/10.12688/f1000research.24163.2
Method Article metrics
Revised
Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency
[version 2; peer review: 2 approved]
Peer Reviewers Tianci Song and Rui Kuang; Adi Tarca
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Feb 2021
https://doi.org/10.12688/f1000research.22391.1
Research Article metrics
Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Hilal Kazan; Alexander Lachmann
  • Funder
  • University of the West Indies
PUBLISHED 03 Feb 2021
https://doi.org/10.12688/f1000research.25713.2
Software Tool Article metrics
Revised
VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Dinesh Gupta; Mitesh Dwivedi and Rasheedunnisa Begum; Animesh A Sinha
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.21782.4
Research Article metrics
Update
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
[version 4; peer review: 4 approved]
Peer Reviewers Aleksey V. Zimin and Steven Salzberg; Robert Vaser and Mile Šikić; Mikhail Kolmogorov; Olin Silander
  • Funders
  • Department of Education, Employment and Workplace Relations, Australian Government
  • Sylvia and Charles Viertel Charitable Foundation
  • Gates Foundation
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.21142.2
Software Tool Article metrics
Revised
Falco: high-speed FastQC emulation for quality control of sequencing data
[version 2; peer review: 2 approved]
Peer Reviewers R Henrik Nilsson; Weihong Qi
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.36371.1
Research Article metrics
Reverse vaccinology approach towards the in-silico multiepitope vaccine development against SARS-CoV-2
[version 1; peer review: 2 approved]
Peer Reviewers Sivaraman Natarajan; Tirumala Bharani K. Settypalli
PUBLISHED 23 Jan 2021
https://doi.org/10.12688/f1000research.27268.1
Software Tool Article metrics
rANOMALY: AmplicoN wOrkflow for Microbial community AnaLYsis
[version 1; peer review: 2 approved]
Peer Reviewers Florent Murat; Simon Roux
PUBLISHED 07 Jan 2021
https://doi.org/10.12688/f1000research.22149.4
Brief Report metrics
Update
Use of the informational spectrum methodology for rapid biological analysis of the novel coronavirus 2019-nCoV: prediction of potential receptor, natural reservoir, tropism and therapeutic/vaccine target
[version 4; peer review: 2 approved]
Peer Reviewers Rita Casadio; Maria Salvato
LATEST VERSION PUBLISHED 06 Jan 2021
https://doi.org/10.12688/f1000research.28175.1
Research Article metrics
Energy-dependent protein folding: modeling how a protein folding machine may work
[version 1; peer review: 1 approved, 3 approved with reservations]
Peer Reviewers Lisa J. Lapidus; Stephen D. Fried; Antonio Trovato; José Arcadio Farías Rico
  • Funders
  • Foundation Armenia (Switzerland)
  • National Academy of Sciences of Armenia
  • Strenic LLC
  • National Science Foundation
PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.26880.2
Software Tool Article metrics
Revised
Recursive Cluster Elimination based Rank Function (SVM-RCE-R) implemented in KNIME
[version 2; peer review: 3 approved]
Peer Reviewers Marco Chierici; Osman Ugur Sezerman; Abhishek Kumar
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.19080.2
Study Protocol metrics
Revised
A recall-by-genotype study on polymorphisms in the TMPRSS6 gene and oral iron absorption: a study protocol
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Dale R. Nyholt and Hamzeh MESRIAN TANHA; Alida Melse-Boonstra
  • Funders
  • Department for International Development
  • Medical Research Council UK
LATEST VERSION PUBLISHED 04 Jan 2021
https://doi.org/10.12688/f1000research.23390.2
Software Tool Article metrics
Revised
Seqpare: a novel metric of similarity between genomic interval sets
[version 2; peer review: 2 approved]
Peer Reviewers Zhaohui Steve Qin; Burcak Otlu
LATEST VERSION PUBLISHED 04 Jan 2021
https://doi.org/10.12688/f1000research.25413.2
Research Article metrics
Revised
Biocuration - mapping resources and needs
[version 2; peer review: 2 approved]
Peer Reviewers Tanya Berardini; Luana Licata
  • Funder
  • ELIXIR
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.26930.1
Research Article metrics
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
[version 1; peer review: 3 approved]
Peer Reviewers Brian Ondov; Burkhard Morgenstern; Guy Perrière
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.26498.1
Editorial metrics NOT PEER REVIEWED
The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)
[version 1; peer review: not peer reviewed]
PUBLISHED 21 Sep 2020
https://doi.org/10.12688/f1000research.25540.1
Research Article metrics
Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification
[version 1; peer review: 2 approved]
Peer Reviewers Mohamed N. Seleem; Shaankumar Mooyottu
  • Funder
  • National Institute of Food and Agriculture
PUBLISHED 16 Sep 2020
https://doi.org/10.12688/f1000research.24187.2
Software Tool Article metrics
Revised
ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R
[version 2; peer review: 3 approved]
Peer Reviewers Jean Fan; Lucy D'Agostino McGowan; Matthew Ritchie
  • Funders
  • National Institutes of Health
  • German Federal Ministry of Education and Research
LATEST VERSION PUBLISHED 16 Sep 2020
https://doi.org/10.12688/f1000research.20244.2
Opinion Article metrics
Revised
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
[version 2; peer review: 2 approved]
Peer Reviewers Roland Krause; Loredana Le Pera and Allegra Via
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Ministerium für Innovation, Wissenschaft und Forschung des Landes Nordrhein-Westfalen
LATEST VERSION PUBLISHED 11 Sep 2020
181-200 of 638 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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