All Research Articles

21-40 of 638 ARTICLES
https://doi.org/10.12688/f1000research.168810.1
Software Tool Article metrics
CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
[version 1; peer review: 1 not approved]
Peer Reviewers Florian van daalen
  • Funder
  • STPRZG
PUBLISHED 29 Aug 2025
https://doi.org/10.12688/f1000research.163662.2
Research Article metrics
Revised
Health Security inequalities in Non-EU European Countries: A Cross-National Comparative Assessment Using an Integrated MCDM-Machine Learning Approach
[version 2; peer review: 2 approved]
Peer Reviewers Shaimaa Awadh Baha al_Deen; Mohammed S. Abdo
  • Funder
  • Deanship of Scientific Research, Prince Sattam bin Abdulaziz University
LATEST VERSION PUBLISHED 19 Aug 2025
https://doi.org/10.12688/f1000research.139476.2
Research Article metrics
Revised
Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains
[version 2; peer review: 2 approved, 2 approved with reservations]
Peer Reviewers Charu Mehta; Chiara Herzog; Busra Unal; Kosuke Yamaguchi
  • Funders
  • National Institutes of Health, National Cancer Institute
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 24 Jul 2025
https://doi.org/10.12688/f1000research.166855.1
Software Tool Article metrics
KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
[version 1; peer review: 1 approved with reservations]
Peer Reviewers Amelia S Power and Amanda Groenewald
  • Funders
  • Targeted Translation Research Accelerator
  • New South Wales Office for Health and Medical Research
PUBLISHED 17 Jul 2025
https://doi.org/10.12688/f1000research.163833.1
Software Tool Article metrics
LitSieve: An integrated literature search and triage tool for biocuration
[version 1; peer review: 1 approved with reservations]
Peer Reviewers Kim Rutherford
  • Funders
  • European Molecular Biology Laboratory
  • HORIZON EUROPE Marie Sklodowska-Curie Actions
PUBLISHED 11 Jul 2025
https://doi.org/10.12688/f1000research.164319.1
Software Tool Article metrics
Improving rigor and reproducibility in chromatin immunoprecipitation assay data analysis workflows with Rocketchip
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Zhengyao Shao; Karol Bomsztyk
  • Funders
  • Rett Syndrome Research Trust
  • Autism Science Foundation
  • National Institutes of Health
PUBLISHED 25 Jun 2025
https://doi.org/10.12688/f1000research.155223.2
Review metrics
Revised
Selecting differential splicing methods: Practical considerations for short-read RNA sequencing
[version 2; peer review: 2 approved, 3 approved with reservations]
Peer Reviewers Stefano Donega; Charlotte Capitanchik; Julia Olivieri; Zhaoqi Liu; Monica Salinas and Juan Valcarcel
  • Funders
  • Lonza Biologics plc
  • University of Sheffield
LATEST VERSION PUBLISHED 30 May 2025
https://doi.org/10.12688/f1000research.158264.3
Method Article metrics
Revised
Using text-mining to measure the scientific impact and legacy of ELIXIR, a distributed research infrastructure for life science data
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Helen M. Berman; Shuichi Kawashima; Alfonso Valencia
  • Funders
  • Italian Ministry for Universities and Research (National Recovery and Resilience Plan M4C2)
  • European Union (Horizon Programmes)
  • ELIXIR, the research infrastructure for life science data
LATEST VERSION PUBLISHED 22 Apr 2025
https://doi.org/10.12688/f1000research.163516.1
Method Article metrics
NAD: Noise-augmented direct sequencing of target nucleic acids by augmenting with noise and selective sampling
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Ruslan Kalendar; Runsheng Li
PUBLISHED 10 Apr 2025
https://doi.org/10.12688/f1000research.157875.2
Study Protocol metrics
Revised
Identifying and Assessing Physiological Biomarkers for Food and Energy Intake: A Systematic Review with Meta-Analysis Protocol
[version 2; peer review: 1 approved with reservations]
Peer Reviewers Faiza Jan Iftikhar
  • Funder
  • Dame Julia Higgins Postdoc Collaborative Research Fund
LATEST VERSION PUBLISHED 03 Apr 2025
https://doi.org/10.12688/f1000research.160063.2
Software Tool Article metrics
Revised
mimicINT: A workflow for microbe-host protein interaction inference
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Ylva Ivarsson; Sobia Idrees; Leandro Simonetti
  • Funders
  • Excellence Initiative of Aix-Marseille University - A*MIDEX
  • Agence Nationale de la Recherche
  • Fondation pour la Recherche Médicale
  • European Union’s Horizon 2020 Research and Innovation Programme
LATEST VERSION PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.162719.1
Software Tool Article metrics
The EpiFusion Analysis Framework for joint phylodynamic and epidemiological analysis of outbreak characteristics
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Vijaykrishna Dhanasekaran and Ruopeng Xie; Claire Guinat; Leo A Featherstone
  • Funders
  • National Universities of Ireland Denis Phelan Scholarship
  • Medical Research Council
  • Wellcome Trust
  • Bloomsbury Colleges PhD Studentship
PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.161076.1
Software Tool Article metrics
ShinyCellPlus: an improved ShinyCell application for the interactive visualization of single cell dat
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Valdemaras Petrošius; Pierre-Luc Germain
  • Funder
  • National Institute of General Medical Sciences
PUBLISHED 27 Mar 2025
https://doi.org/10.12688/f1000research.150975.3
Research Article metrics
Revised
Analyzing Molecular Traits of H9N2 Avian Influenza Virus Isolated from a Same Poultry Farm in West Java Province, Indonesia, in 2017 and 2023
[version 3; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Amany Adel; Mark Zanin and Hui Lei; Albert Perlas
  • Funder
  • Universitas Indonesia, PUTI Grant
LATEST VERSION PUBLISHED 05 Mar 2025
https://doi.org/10.12688/f1000research.76068.5
Research Article metrics
Revised
Cicada minimum age tree: Cryptic speciation and exponentially increasing base substitution rates in recent geologic time
[version 5; peer review: 2 approved, 2 approved with reservations, 1 not approved]
Peer Reviewers Sungsik Kong; David A Duchêne; Fan Song; Jacek Szwedo; Christopher H Dietrich
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 14 Feb 2025
https://doi.org/10.12688/f1000research.127142.3
Software Tool Article metrics
Revised
Med-ImageTools: An open-source Python package for robust data processing pipelines and curating medical imaging data
[version 3; peer review: 2 approved]
Peer Reviewers Rachel Sparks; Johann Faouzi
  • Funders
  • Canadian Cancer Society
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 07 Feb 2025
https://doi.org/10.12688/f1000research.157851.2
Genome Note metrics
Revised
A reference genome for the eastern bettong (Bettongia gaimardi)
[version 2; peer review: 3 approved]
Peer Reviewers Naoki Osada; Jonathan J Hughes; Németh Attila
  • Funder
  • Australian Research Council
LATEST VERSION PUBLISHED 27 Jan 2025
https://doi.org/10.12688/f1000research.156295.1
Software Tool Article metrics
Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots
[version 1; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Digvijay Verma; Vitor Heidrich; Luke R Thompson
  • Funder
  • National Institutes of Health
PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.146862.3
Research Article metrics
Revised
Molecular docking and dynamics studies to identify novel active compounds targeting potential breast cancer receptor proteins from an indigenous herb Euphorbia thymifolia Linn
[version 3; peer review: 2 approved]
Peer Reviewers Renukaradhya Math; Subhash Chandra
LATEST VERSION PUBLISHED 09 Dec 2024
https://doi.org/10.12688/f1000research.146350.2
Research Article metrics
Revised
Study anti-viral drugs for their efficiency against multiple SARS CoV-2 drug targets within molecular docking, molecular quantum similarity, and chemical reactivity indices frameworks
[version 2; peer review: 1 approved, 2 approved with reservations, 2 not approved]
Peer Reviewers Sajjan Rajpoot; Sobia Ahsan Halim; Mohnad Abdalla; Taufik Muhammad Fakih; Estari Mamidala
  • Funder
  • Unisinu 2024
LATEST VERSION PUBLISHED 06 Dec 2024
21-40 of 638 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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