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 in 
https://doi.org/10.12688/f1000research.53858.2
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Revised
GARCOM: A user-friendly R package for genetic mutation counts
[version 2; peer review: 2 approved, 1 approved with reservations]
Sanjeev Sariya, Giuseppe Tosto
Peer Reviewers Ettore Mosca; Stephen M. Pederson; Tao Wang
  • Funder
  • National Institute of Aging
LATEST VERSION PUBLISHED 17 May 2024
https://doi.org/10.12688/f1000research.74416.2
Software Tool Article metrics
Revised
BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
[version 2; peer review: 1 approved, 2 approved with reservations]
Alan O'Callaghan, Nils Eling, John C. Marioni, Catalina A. Vallejos
Peer Reviewers Oliver M. Crook; Andrew McDavid; Michel S Naslavsky
  • Funders
  • Cancer Research UK
  • University of Edinburgh
  • European Molecular Biology Laboratory
LATEST VERSION PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.127348.2
Software Tool Article metrics
Revised
CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes
[version 2; peer review: 1 approved, 2 approved with reservations]
Jianqiang Sun, Xi Fu, Wei Cao
Peer Reviewers Eric Soler and Mohammad Salma; Xueyi Dong; Alexander Zelikovsky and Bikram Sahoo
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 30 Apr 2024
https://doi.org/10.12688/f1000research.124919.3
Research Article metrics
Revised
Efficacy of mesenchymal stem cells cultured low oxygen tension ameliorates apoptotic inhibitors, viability, and differentiation of ovarian tissue: A study in a rat model with ovarian failure
[version 3; peer review: 2 approved, 1 not approved]
Erma Safitri, Hery Purnobasuki, Muhammad Thohawi Elziyad Purnama, Shekhar Chhetri
Peer Reviewers Deepa Bhartiya; Zezheng Pan; Raheleh Farahzadi
  • Funder
  • Ministry of Education, Culture, Research and Technology, Republic of Indonesia
LATEST VERSION PUBLISHED 16 Apr 2024
https://doi.org/10.12688/f1000research.139867.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for amyloid-beta precursor protein for use in Western Blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 3 approved, 1 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Donovan Worrall, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Amal Kaddoumi; Jens-Ulrich Rahfeld; Jieya Shao; Karen Bowman
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Genome Quebec
  • Mitacs
  • Genome Canada
  • National Institutes of Aging
LATEST VERSION PUBLISHED 10 Apr 2024
https://doi.org/10.12688/f1000research.121695.2
Research Article metrics
Revised
Moringa oleifera fruit extract as a potential antioxidant against liver injury by 2-Nitropropane induction in obese male mice model: pre-clinical study
[version 2; peer review: 1 approved, 2 approved with reservations]
Maria Selvester Thadeus, Tiwuk Susantiningsih, Hikmah Muktamiroh, Cut Fauziah, Mila Citrawati, Agneta Irmarahayu, Sri Wahyuningsih, Yanti Harjono Hadiwiardjo, Hany Yusmaini, Meiskha Bahar, Fajriati Zulfa, Diana Agustini, Aulia Chairani
Peer Reviewers Terisha Ghazi; Wahyunia Likhayati Septiana; Taghred Saber
  • Funder
  • LPPM UPN Veteran Jakarta
LATEST VERSION PUBLISHED 12 Feb 2024
https://doi.org/10.12688/f1000research.127061.2
Research Article metrics
Revised
Understanding the high electronic quantum similarity of a series of ligands used as inhibitors of the SARS-CoV-2 virus by molecular mechanics and density functional theory approaches
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Ahmed Metwaly; Ramon Carbó-Dorca; Kiran Bharat Lokhande; Vikram Dalal; Mohnad Abdalla
  • Funder
  • Fundación Universitaria Tecnológico Comfenalco
LATEST VERSION PUBLISHED 06 Feb 2024
https://doi.org/10.12688/f1000research.128706.2
Research Article metrics
Revised
Identification of the SIRT1 gene's most harmful non-synonymous SNPs and their effects on functional and structural features-an in silico analysis
[version 2; peer review: 2 approved]
Desy Thayyil Menambath, Usha Adiga, Tirthal Rai, Sachidananda Adiga, Vijith Shetty
Peer Reviewers Laxminarayana Kurady Bairy; Bhushan L. Thakur
  • Funder
  • Not Applicable
LATEST VERSION PUBLISHED 19 Jan 2024
https://doi.org/10.12688/f1000research.131253.1
Research Article metrics AWAITING PEER REVIEW
Bovine umbilical vein endothelial cells conditioned medium prevents TMT-induced neurotoxicity mediated by the upregulation of brain-derived neurotropic factors on the human neuroblastoma SH-SY5Y cells
[version 1; peer review: awaiting peer review]
Golda Rani Saragih, Sugi Winarsih, Hevi Wihadmadyatami, Dwi Liliek Kusindarta
Peer Reviewers Invited
  • Funder
  • Universitas Gadjah Mada
PUBLISHED 12 Jan 2024
https://doi.org/10.12688/f1000research.131728.1
Research Article metrics
In silico identification of quorum sensing inhibitors against LasR protein in a clinical isolate of multidrug resistant Pseudomonas aeruginosa DMC-27b
[version 1; peer review: 1 approved]
Md. Hasanul Banna Siam, Ahmad Salman Sirajee, Md. Belayet Hasan Limon, M. Anwar Hossain, Munawar Sultana
Peer Reviewers Sudipta Shaw
PUBLISHED 12 Jan 2024
https://doi.org/10.12688/f1000research.130995.3
Brief Report metrics
Revised
The utility of salivary CRP and IL-6 as a non-invasive measurement evaluated in patients with COVID-19 with and without diabetes
[version 3; peer review: 2 approved]
Endang Bachtiar, Boy M Bachtiar, Ardiana Kusumaningrum, Hari Sunarto, Yuniarti Soeroso, Benso Sulijaya, Efa Apriyanti, Citra Fragrantia Theodorea, Irandi Putra Pratomo, Yudhistira Yudhistira, Defi Efendi, Widya Lestari
Peer Reviewers Joel Schwartz; Ghada Ibrahim Taha
  • Funder
  • The Grant from Universitas Indonesia
LATEST VERSION PUBLISHED 11 Jan 2024
https://doi.org/10.12688/f1000research.129645.2
Research Article metrics
Revised
Impact of multiple different high-fat diets on metabolism, inflammatory markers, dysbiosis, and liver histology: study on NASH rat model induced diet
[version 2; peer review: 2 approved]
Syifa Mustika, Dewi Santosaningsih, Dian Handayani, Achmad Rudijanto
Peer Reviewers Pabulo Henrique Rampelotto and Elisa Carolina Lange; Endang Sutriswati Rahayu
LATEST VERSION PUBLISHED 12 Dec 2023
https://doi.org/10.12688/f1000research.123550.3
Research Article metrics
Revised
New findings on ligand series used as SARS-CoV-2 virus inhibitors within the frameworks of molecular docking, molecular quantum similarity and chemical reactivity indices
[version 3; peer review: 1 approved, 1 approved with reservations]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Truong Tan Trung; Yogesh Kumar
  • Funder
  • UNISINU-2022-2
LATEST VERSION PUBLISHED 11 Dec 2023
https://doi.org/10.12688/f1000research.140883.1
Research Article metrics
Plackett-Burman design in the biosynthesis of silver nanoparticles with Mutisia acuminatta (Chinchircoma) and preliminary evaluation of its antibacterial activity
[version 1; peer review: 1 approved, 2 approved with reservations]
Luis A. Laime-Oviedo, Carlos A. Arenas-Chávez, Jaime A. Yáñez, Corina A. Vera-Gonzáles
Peer Reviewers Samson O Aisida; Amr Mohamed Abdelghany; Davoodbasha Mubarakali
  • Funder
  • Universidad Nacional de San Agustin de Arequipa
PUBLISHED 13 Nov 2023
https://doi.org/10.12688/f1000research.140568.1
Research Article metrics
High-throughput virtual screening approach and dynamic simulation of natural compounds as target inhibitors of BACE1 in Alzheimer's disease
[version 1; peer review: 1 approved with reservations, 1 not approved]
Fadoua Elkamili, Abderrahim Ait Ouchaoui, Leandro L. Lorente-Leyva, Diego Hernán Peluffo-Ordóñez
Peer Reviewers Luis Humberto Mendoza-Huizar; Atiya Akhtar
PUBLISHED 23 Oct 2023
https://doi.org/10.12688/f1000research.141719.1
Editorial metrics NOT PEER REVIEWED
YCharOS open antibody characterisation data: Lessons learned and progress made
[version 1; peer review: not peer reviewed]
Michael S. Biddle, Harvinder S. Virk
  • Funders
  • Medical Research Council
  • Leicester Institute of Advanced Studies
PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.73561.3
Research Article metrics
Revised
Effect of cogon grass root ethanol extract on fatty acid binding protein 4 and oxidative stress markers in a sepsis mouse model
[version 3; peer review: 1 approved, 2 approved with reservations]
Mirasari Putri, Bening Mauliddina Rastiarsa, Raden Aliya T. M. Djajanagara, Ghaliby Ardhia Ramli, Neni Anggraeni, Nugraha Sutadipura, Nur Atik, Mas Rizky A. A. Syamsunarno
Peer Reviewers Katrin Roosita; Ming Zhong; Patipark Kueanjinda
  • Funder
  • Ministry of Education, Culture, Research, and Technology of Indonesia.
LATEST VERSION PUBLISHED 03 Oct 2023
https://doi.org/10.12688/f1000research.133899.3
Data Note metrics
Revised
Identification of high-performing antibodies for Apolipoprotein E for use in Western Blot and immunoprecipitation
[version 3; peer review: 1 approved, 2 approved with reservations]
Riham Ayoubi, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS collaborative group
Peer Reviewers Leonard Kritharides and Maaike Kockx; Nathalie Macrez; Valerio Leoni
  • Funders
  • Bristol-Myers Squibb
  • National Institute of Aging
  • Takeda
  • Pfizer
  • Genome Quebec
  • Ontario Genomics
  • Genentech
  • Bayer AG
  • Boehringer Ingelheim
  • Merck KGaA
  • EUbOPEN
  • Mitacs
  • Ontario Genomics Institute
  • Janssen Pharmaceuticals
LATEST VERSION PUBLISHED 29 Sep 2023
https://doi.org/10.12688/f1000research.134658.1
Research Article metrics
Immunoinformatics design of B-cell multi-epitope peptide for the diagnosis of Methicillin Resistant Staphylococcus aureus (MRSA) infection
[version 1; peer review: 1 approved]
Simeon Kayowa Olatunde, Joshua Babatunde Owolabi, Bolaji Oluwabusayo Ayinde, Shauna Angella Ebanks, Edla Sophia Vidale, Elijah Kolawole Oladipo, Yakubu Adekunle Alli, Enoch Oluwalonimi Adewara
Peer Reviewers Potukuchi Venkata Gurunadha Krishna Sarma
PUBLISHED 18 Sep 2023
https://doi.org/10.12688/f1000research.125945.2
Review metrics
Revised
Pathomechanisms Of Non-Coding RNAs, Hub Genes, and Lifestyle Related To The Oxidative Stress In Type 2 Diabetes And Cardiac Complications.
[version 2; peer review: 1 approved, 1 not approved]
Fatemeh Hajibabaie, Faranak Aali, Navid Abedpoor
Peer Reviewers Gladys Ko; Yi Song
LATEST VERSION PUBLISHED 13 Sep 2023
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