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https://doi.org/10.12688/f1000research.141669.2
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Revised
Exploring the anti-aging potential of natural products and plant extracts in budding yeast Saccharomyces cerevisiae: A review
[version 2; peer review: 2 approved, 3 approved with reservations]
Phaniendra Alugoju, Chella Perumal Palanisamy, Naga Venkata Anusha Anthikapalli, Selvaraj Jayaraman, Anchalee Prasanskulab, Siriporn Chuchawankul, Madhu Dyavaiah, Tewin Tencomnao
Peer Reviewers Srinivasa Rao Sirasanagandla; John Hartman; Marco Eigenfeld; Hemagirri Manisekaran; Weiwei Dang
  • Funder
  • Chulalongkorn University
LATEST VERSION PUBLISHED 17 Dec 2024
https://doi.org/10.12688/f1000research.123181.3
Research Article metrics
Revised
Structural and Functional Implications of Polyarginine Addition to Green Fluorescent Protein Expression in Saccharomyces cerevisiae INVSc1
[version 3; peer review: 5 not approved]
Shania Safera Tandio Saputro, Khayu Wahyunita, Astutiati Nurhasanah, Yudhi Nugraha, Irvan Faizal, Sabar Pambudi, Syahputra Wibowo, Andri Pramesyanti Pramono
Peer Reviewers Khomaini Hasan; Hisao Moriya; Stéphane Guyot; Yide Huang; Francine M Perrine-Walker
  • Funder
  • The works were financially supported by the Universitas Pembangunan Nasional Veteran Jakarta, DRPM Grant from Kemendikbud.
LATEST VERSION PUBLISHED 25 Nov 2024
https://doi.org/10.12688/f1000research.157145.1
Research Article metrics AWAITING PEER REVIEW
Eosinophilia and Leucocytic DNA damage
[version 1; peer review: awaiting peer review]
Yim Tong Szeto
Peer Reviewers Invited
  • Funder
  • Tung Wah College
PUBLISHED 11 Oct 2024
https://doi.org/10.12688/f1000research.153243.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for CSNK2A1 (UniProt ID: P68400) for use in western blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 1 approved, 2 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Charles Alende, Vera Ruíz Moleón, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Odile Filhol and Catherine Pillet; David Litchfield; Miwako Homma
  • Funders
  • Ontario Genomics
  • from Canadian Institutes of Health Research Foundation
  • Simons Foundation Autism Research Initiative
  • Mitacs
  • Genome Quebec
  • Genome Canada
LATEST VERSION PUBLISHED 05 Sep 2024
https://doi.org/10.12688/f1000research.148400.1
Review metrics AWAITING PEER REVIEW
A comprehensive review on epigenetic and epitranscriptomic-mediated regulation of antibiotic resistance
[version 1; peer review: awaiting peer review]
Pankaj Kumar Giri, Shahil Alam, Madhav Dhakal
Peer Reviewers Invited
  • Funders
  • Science and Engineering Research Board
  • Department of Biotechnology, Ministry of Science and Technology, India
PUBLISHED 24 Jul 2024
https://doi.org/10.12688/f1000research.132628.2
Data Note metrics
Revised
The identification of high-performing antibodies for Sequestosome-1 for use in Western blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 2 approved]
Riham Ayoubi, Walaa Alshafie, Irina Shlaifer, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group
Peer Reviewers Yasukazu Takanezawa; Guoqiang Xu
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • ALS Society of Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Genome Quebec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 10 Jul 2024
https://doi.org/10.12688/f1000research.140456.3
Data Note metrics
Revised
Identification of high-performing antibodies for tyrosine-protein kinase SYK for use in Western Blot, immunoprecipitation and immunofluorescence
[version 3; peer review: 2 approved]
Walaa Alshafie, Maryam Fotouhi, Riham Ayoubi, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS collaborative group
Peer Reviewers Kiyonao Sada; Araujo Nelson A
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Genome Quebec
  • Mitacs
  • Genome Canada
  • National Institute on Aging
LATEST VERSION PUBLISHED 11 Jun 2024
https://doi.org/10.12688/f1000research.123984.2
Research Article metrics
Revised
A potential role of arcadia in conditioned media - umbilical cord derived mesenchymal stem cell on  cartilage repair
[version 2; peer review: 1 approved with reservations, 3 not approved]
Bintang Soetjahjo, Denny Adriansyah, Wibi Riawan
Peer Reviewers William Mark Erwin; Girish Pattappa; Rajesh Ramasamy; Jeanne Adiwinata Pawitan
LATEST VERSION PUBLISHED 06 Jun 2024
https://doi.org/10.12688/f1000research.53858.2
Software Tool Article metrics
Revised
GARCOM: A user-friendly R package for genetic mutation counts
[version 2; peer review: 2 approved, 1 approved with reservations]
Sanjeev Sariya, Giuseppe Tosto
Peer Reviewers Ettore Mosca; Stephen M. Pederson; Tao Wang
  • Funder
  • National Institute of Aging
LATEST VERSION PUBLISHED 17 May 2024
https://doi.org/10.12688/f1000research.74416.2
Software Tool Article metrics
Revised
BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
[version 2; peer review: 1 approved, 2 approved with reservations]
Alan O'Callaghan, Nils Eling, John C. Marioni, Catalina A. Vallejos
Peer Reviewers Oliver M. Crook; Andrew McDavid; Michel S Naslavsky
  • Funders
  • Cancer Research UK
  • University of Edinburgh
  • European Molecular Biology Laboratory
LATEST VERSION PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.127348.2
Software Tool Article metrics
Revised
CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes
[version 2; peer review: 1 approved, 2 approved with reservations]
Jianqiang Sun, Xi Fu, Wei Cao
Peer Reviewers Eric Soler and Mohammad Salma; Xueyi Dong; Alexander Zelikovsky and Bikram Sahoo
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 30 Apr 2024
https://doi.org/10.12688/f1000research.124919.3
Research Article metrics
Revised
Efficacy of mesenchymal stem cells cultured low oxygen tension ameliorates apoptotic inhibitors, viability, and differentiation of ovarian tissue: A study in a rat model with ovarian failure
[version 3; peer review: 2 approved, 1 not approved]
Erma Safitri, Hery Purnobasuki, Muhammad Thohawi Elziyad Purnama, Shekhar Chhetri
Peer Reviewers Deepa Bhartiya; Zezheng Pan; Raheleh Farahzadi
  • Funder
  • Ministry of Education, Culture, Research and Technology, Republic of Indonesia
LATEST VERSION PUBLISHED 16 Apr 2024
https://doi.org/10.12688/f1000research.139867.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for amyloid-beta precursor protein for use in Western Blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 3 approved, 1 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Donovan Worrall, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Amal Kaddoumi; Jens-Ulrich Rahfeld; Jieya Shao; Karen Bowman
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Genome Quebec
  • Mitacs
  • Genome Canada
  • National Institutes of Aging
LATEST VERSION PUBLISHED 10 Apr 2024
https://doi.org/10.12688/f1000research.121695.2
Research Article metrics
Revised
Moringa oleifera fruit extract as a potential antioxidant against liver injury by 2-Nitropropane induction in obese male mice model: pre-clinical study
[version 2; peer review: 1 approved, 2 approved with reservations]
Maria Selvester Thadeus, Tiwuk Susantiningsih, Hikmah Muktamiroh, Cut Fauziah, Mila Citrawati, Agneta Irmarahayu, Sri Wahyuningsih, Yanti Harjono Hadiwiardjo, Hany Yusmaini, Meiskha Bahar, Fajriati Zulfa, Diana Agustini, Aulia Chairani
Peer Reviewers Terisha Ghazi; Wahyunia Likhayati Septiana; Taghred Saber
  • Funder
  • LPPM UPN Veteran Jakarta
LATEST VERSION PUBLISHED 12 Feb 2024
https://doi.org/10.12688/f1000research.127061.2
Research Article metrics
Revised
Understanding the high electronic quantum similarity of a series of ligands used as inhibitors of the SARS-CoV-2 virus by molecular mechanics and density functional theory approaches
[version 2; peer review: 1 approved, 2 approved with reservations, 3 not approved]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Ahmed Metwaly; Ramon Carbó-Dorca; Kiran Bharat Lokhande; Vikram Dalal; Mohnad Abdalla; Sharvan Sehrawat
  • Funder
  • Fundación Universitaria Tecnológico Comfenalco
LATEST VERSION PUBLISHED 06 Feb 2024
https://doi.org/10.12688/f1000research.128706.2
Research Article metrics
Revised
Identification of the SIRT1 gene's most harmful non-synonymous SNPs and their effects on functional and structural features-an in silico analysis
[version 2; peer review: 2 approved]
Desy Thayyil Menambath, Usha Adiga, Tirthal Rai, Sachidananda Adiga, Vijith Shetty
Peer Reviewers Laxminarayana Kurady Bairy; Bhushan L. Thakur
  • Funder
  • Not Applicable
LATEST VERSION PUBLISHED 19 Jan 2024
https://doi.org/10.12688/f1000research.131253.1
Research Article metrics AWAITING PEER REVIEW
Bovine umbilical vein endothelial cells conditioned medium prevents TMT-induced neurotoxicity mediated by the upregulation of brain-derived neurotropic factors on the human neuroblastoma SH-SY5Y cells
[version 1; peer review: awaiting peer review]
Golda Rani Saragih, Sugi Winarsih, Hevi Wihadmadyatami, Dwi Liliek Kusindarta
Peer Reviewers Invited
  • Funder
  • Universitas Gadjah Mada
PUBLISHED 12 Jan 2024
https://doi.org/10.12688/f1000research.131728.1
Research Article metrics
In silico identification of quorum sensing inhibitors against LasR protein in a clinical isolate of multidrug resistant Pseudomonas aeruginosa DMC-27b
[version 1; peer review: 1 approved]
Md. Hasanul Banna Siam, Ahmad Salman Sirajee, Md. Belayet Hasan Limon, M. Anwar Hossain, Munawar Sultana
Peer Reviewers Sudipta Shaw
PUBLISHED 12 Jan 2024
https://doi.org/10.12688/f1000research.130995.3
Brief Report metrics
Revised
The utility of salivary CRP and IL-6 as a non-invasive measurement evaluated in patients with COVID-19 with and without diabetes
[version 3; peer review: 2 approved]
Endang Bachtiar, Boy M Bachtiar, Ardiana Kusumaningrum, Hari Sunarto, Yuniarti Soeroso, Benso Sulijaya, Efa Apriyanti, Citra Fragrantia Theodorea, Irandi Putra Pratomo, Yudhistira Yudhistira, Defi Efendi, Widya Lestari
Peer Reviewers Joel Schwartz; Ghada Ibrahim Taha
  • Funder
  • The Grant from Universitas Indonesia
LATEST VERSION PUBLISHED 11 Jan 2024
https://doi.org/10.12688/f1000research.129645.2
Research Article metrics
Revised
Impact of multiple different high-fat diets on metabolism, inflammatory markers, dysbiosis, and liver histology: study on NASH rat model induced diet
[version 2; peer review: 2 approved]
Syifa Mustika, Dewi Santosaningsih, Dian Handayani, Achmad Rudijanto
Peer Reviewers Pabulo Henrique Rampelotto and Elisa Carolina Lange; Endang Sutriswati Rahayu
LATEST VERSION PUBLISHED 12 Dec 2023
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