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https://doi.org/10.12688/f1000research.8347.1
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Autophagy- An emerging target for melanoma therapy
[version 1; peer review: 2 approved]
Abibatou Ndoye, Ashani T. Weeraratna
Peer Reviewers Xu Dong Zhang; Janice Mehnert
PUBLISHED 29 Jul 2016
https://doi.org/10.12688/f1000research.8459.1
Review metrics
Recent advances in pathogenesis, assessment, and treatment of atherosclerosis
[version 1; peer review: 3 approved]
J. David Spence
Peer Reviewers Conrado Estol; Tasneem Naqvi; Tatjana Rundek
PUBLISHED 28 Jul 2016
https://doi.org/10.12688/f1000research.8818.1
Review metrics
Mapping paths: new approaches to dissect eukaryotic signaling circuitry
[version 1; peer review: 3 approved]
Nebibe Mutlu, Anuj Kumar
Peer Reviewers Todd Reynolds; Paul J. Cullen; Heng Zhu
PUBLISHED 27 Jul 2016
https://doi.org/10.12688/f1000research.9211.1
Software Tool Article metrics
cy3sabiork: A Cytoscape app for visualizing kinetic data from SABIO-RK
[version 1; peer review: 2 approved with reservations]
Matthias König
Peer Reviewers Barry Demchak; Ali Salehzadeh-Yazdi
PUBLISHED 18 Jul 2016
https://doi.org/10.12688/f1000research.9158.1
Editorial metrics NOT PEER REVIEWED
2016 ISCB Overton Prize awarded to Debora Marks
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats
PUBLISHED 05 Jul 2016
https://doi.org/10.12688/f1000research.9110.1
Method Article metrics
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
[version 1; peer review: 3 approved]
Zichen Wang, Avi Ma'ayan
Peer Reviewers Ravi K. Madduri; Apostolos Zaravinos; Fredrik Pettersson and Sarbashis Das
PUBLISHED 05 Jul 2016
https://doi.org/10.12688/f1000research.8759.2
Software Tool Article metrics
Revised
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
[version 2; peer review: 2 approved]
Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
Peer Reviewers Douglas Phanstiel; Nicolas Servant
LATEST VERSION PUBLISHED 28 Jun 2016
https://doi.org/10.12688/f1000research.8468.1
Review metrics
Models of intestinal infection by Salmonella enterica: introduction of a new neonate mouse model
[version 1; peer review: 2 approved]
Marc Schulte, Michael Hensel
Peer Reviewers Ohad Gal-Mor; John S Gunn
PUBLISHED 24 Jun 2016
https://doi.org/10.12688/f1000research.8406.3
Research Article metrics
Revised
Lovastatin lactone may improve irritable bowel syndrome with constipation (IBS-C) by inhibiting enzymes in the archaeal methanogenesis pathway
[version 3; peer review: 2 approved, 1 approved with reservations]
Steven M. Muskal, Joe Sliman, John Kokai-Kun, Mark Pimentel, Vince Wacher, Klaus Gottlieb
Peer Reviewers Rolf Thauer; Dušica Vidović; Obdulia Rabal
LATEST VERSION PUBLISHED 22 Jun 2016
https://doi.org/10.12688/f1000research.9022.1
Software Tool Article metrics
ddpcr: an R package and web application for analysis of droplet digital PCR data
[version 1; peer review: 2 approved]
Dean Attali, Roza Bidshahri, Charles Haynes, Jennifer Bryan
Peer Reviewers Timothy J. Triche Jr; Stephanie L. Hazlitt and Andy Teucher
PUBLISHED 17 Jun 2016
https://doi.org/10.12688/f1000research.7476.3
Software Tool Article metrics
Revised
Semi-automated Modular Program Constructor for physiological modeling: Building cell and organ models
[version 3; peer review: 2 approved]
Bartholomew Jardine, Gary M. Raymond, James B. Bassingthwaighte
Peer Reviewers Dagmar Waltemath; Vanessa Díaz-Zuccarini
LATEST VERSION PUBLISHED 16 Jun 2016
https://doi.org/10.12688/f1000research.5145.3
Research Note metrics
Update
DOCLASP - Docking ligands to target proteins using spatial and electrostatic congruence extracted from a known holoenzyme and applying simple geometrical transformations
[version 3; peer review: 2 approved]
Sandeep Chakraborty
Peer Reviewers Rahul Banerjee; Amarda Shehu
LATEST VERSION PUBLISHED 16 Jun 2016
https://doi.org/10.12688/f1000research.8639.1
Editorial metrics NOT PEER REVIEWED
Program Bytes - Satellite Meetings, SIGs, and AKEs at ISMB 2016
[version 1; peer review: not peer reviewed]
Christiana N. Fogg
PUBLISHED 14 Jun 2016
https://doi.org/10.12688/f1000research.8445.1
Editorial metrics NOT PEER REVIEWED
Highlights of the 2nd Bioinformatics Student Symposium by ISCB RSG-UK
[version 1; peer review: not peer reviewed]
Benjamen White, Vayani Fatima, Nazeefa Fatima, Sayoni Das, Farzana Rahman, Mehedi Hassan
PUBLISHED 17 May 2016
https://doi.org/10.12688/f1000research.8684.1
Software Tool Article metrics
A cloud-based learning environment for comparing RNA-seq aligners
[version 1; peer review: 2 approved with reservations]
Elizabeth Baskin, Peter DeFord, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby
Peer Reviewers Malachi Griffith; Timothy I. Shaw
PUBLISHED 13 May 2016
https://doi.org/10.12688/f1000research.8251.2
Software Tool Article metrics
Revised
pyGeno: A Python package for precision medicine and proteogenomics
[version 2; peer review: 1 approved, 2 approved with reservations]
Tariq Daouda, Claude Perreault, Sébastien Lemieux
Peer Reviewers Lynn Fink; Hilary Ann Coller; Christian Cole
LATEST VERSION PUBLISHED 10 May 2016
https://doi.org/10.12688/f1000research.8382.2
Editorial metrics NOT PEER REVIEWED
Revised
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping
[version 2; peer review: not peer reviewed]
Ben Busby, Matthew Lesko, August 2015 and January 2016 Hackathon participants, Lisa Federer
LATEST VERSION PUBLISHED 09 May 2016
https://doi.org/10.12688/f1000research.8705.1
Research Note metrics
Assessment of pharmacogenomic agreement
[version 1; peer review: 3 approved]
Zhaleh Safikhani, Nehme El-Hachem, Rene Quevedo, Petr Smirnov, Anna Goldenberg, Nicolai Juul Birkbak, Christopher Mason, Christos Hatzis, Leming Shi, Hugo JWL Aerts, John Quackenbush, Benjamin Haibe-Kains
Peer Reviewers Weida Tong; Terence Speed; Yudi Pawitan
PUBLISHED 09 May 2016
https://doi.org/10.12688/f1000research.7587.2
Editorial metrics NOT PEER REVIEWED
Update
The ELIXIR channel in F1000Research
[version 2; peer review: not peer reviewed]
Niklas Blomberg, Arlindo Oliveira, Barend Mons, Bengt Persson, Inge Jonassen
LATEST VERSION PUBLISHED 04 May 2016
https://doi.org/10.12688/f1000research.7629.1
Review metrics
Recent advances in large-scale protein interactome mapping
[version 1; peer review: 3 approved]
Virja Mehta, Laura Trinkle-Mulcahy
Peer Reviewers Francois-Michel Boisvert; Arnaud Poterszman; Christiane Schaffitzel
PUBLISHED 29 Apr 2016
501-520 of 638 ARTICLES
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