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https://doi.org/10.12688/f1000research.11385.1
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Recent advances in the prevention of preterm birth
[version 1; peer review: 2 approved]
Jeff A Keelan, John P Newnham
Peer Reviewers Martijn A Oudijk; Louis Muglia
PUBLISHED 18 Jul 2017
https://doi.org/10.12688/f1000research.11861.1
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YODEL: Peak calling software for HITS-CLIP data
[version 1; peer review: 2 approved with reservations]
Lance E. Palmer, Mitchell J. Weiss, Vikram R. Paralkar
Peer Reviewers Michele Trabucchi and Silvia Bottini; Neelanjan Mukherjee
  • Funders
  • National Institute of Diabetes and Digestive and Kidney Diseases
  • American Lebanese Syrian Associated Charities
  • Cancer Center Support
PUBLISHED 18 Jul 2017
https://doi.org/10.12688/f1000research.11363.1
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Recent advances in understanding Listeria monocytogenes infection: the importance of subcellular and physiological context
[version 1; peer review: 3 approved]
Daryl J. V. David, Pascale Cossart
Peer Reviewers Jörgen Johansson; Anat A. Herskovits; Sarah D'Orazio
  • Funders
  • European Commission/Marie Curie Actions
  • EMBO Long Term Fellowship
PUBLISHED 13 Jul 2017
https://doi.org/10.12688/f1000research.9259.2
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Revised
GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes
[version 2; peer review: 2 approved]
Evert van den Broek, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J.A. Fijneman, Sanne Abeln
Peer Reviewers Tobias Marschall; Angel Rubio
LATEST VERSION PUBLISHED 06 Jul 2017
https://doi.org/10.12688/f1000research.11859.2
Data Note metrics
Revised
Draft genome sequencing of the sugarcane hybrid SP80-3280
[version 2; peer review: 2 approved]
Diego Mauricio Riaño-Pachón, Lucia Mattiello
Peer Reviewers Jason Miller; Chakravarthi Mohan
  • Funders
  • Centro Nacional de Processamento de Alto Desempenho em São Paulo
  • Brazilian Bioethanol Science and Technology Laboratory
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
LATEST VERSION PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11168.2
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Revised
TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data
[version 2; peer review: 2 approved]
Jesper Eisfeldt, Francesco Vezzi, Pall Olason, Daniel Nilsson, Anna Lindstrand
Peer Reviewers Giuseppe Narzisi and Wayne Clarke; Bud Mishra
  • Funders
  • Marianne and Marcus Wallenberg Foundation
  • Vetenskapsrådet
  • Erik Rönnberg Foundation
  • Nilsson Ehle Donations
  • Svenska Sällskapet för Medicinsk Forskning
  • Hjärnfonden
  • Harald and Greta Jeanssons Foundation
  • Stockholms Läns Landsting
LATEST VERSION PUBLISHED 30 Jun 2017
https://doi.org/10.12688/f1000research.10986.1
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Microbial metal resistance and metabolism across dynamic landscapes: high-throughput environmental microbiology
[version 1; peer review: 2 approved]
Hans Carlson, Adam Deutschbauer, John Coates
Peer Reviewers Bin Cao; David Emerson
  • Funders
  • ENIGMA
  • U.S. Department of Energy
  • Energy Biosciences Institute
PUBLISHED 29 Jun 2017
https://doi.org/10.12688/f1000research.11997.1
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valr: Reproducible genome interval analysis in R
[version 1; peer review: 2 approved]
Kent A. Riemondy, Ryan M. Sheridan, Austin Gillen, Yinni Yu, Christopher G. Bennett, Jay R. Hesselberth
Peer Reviewers Robert A. Amezquita; Ryan K. Dale
  • Funders
  • U.S. National Library of Medicine
  • National Institutes of Health
  • Colorado Office of Economic Development and International Trade
  • BioFrontiers Institute, University of Colorado Boulder
  • University of Colorado
PUBLISHED 29 Jun 2017
https://doi.org/10.12688/f1000research.11398.1
Review metrics
Current progress and future perspectives in the development of anti-polo-like kinase 1 therapeutic agents
[version 1; peer review: 4 approved]
Jung-Eun Park, David Hymel, Terrence R. Burke, Jr., Kyung S. Lee
Peer Reviewers Xiaoqi Liu; Taebo Sim; Vincent Archambault; Wei Dai
  • Funder
  • The Intramural Research Program of the National Institutes of Health (NIH) National Cancer Institute (NCI)
PUBLISHED 29 Jun 2017
https://doi.org/10.12688/f1000research.11610.1
Opinion Article metrics
Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
[version 1; peer review: 3 approved]
Armando Totomoch-Serra, Manlio F. Marquez, David E. Cervantes-Barragán
Peer Reviewers Oscar Campuzano; Estelle Gandjbakhch; Coeli M. Lopes and Diomedes E. Logothetis
PUBLISHED 28 Jun 2017
https://doi.org/10.12688/f1000research.11198.1
Review metrics
New perspectives on the regulation of type II inflammation in asthma
[version 1; peer review: 2 approved]
Mireya Becerra-Díaz, Marsha Wills-Karp, Nicola M. Heller
Peer Reviewers Yeonseok Chung; Xiaoxia Li
  • Funder
  • National Institutes of Health
PUBLISHED 28 Jun 2017
https://doi.org/10.12688/f1000research.11357.1
Review metrics
Heterocellular cadherin connections: coordinating adhesive cues in homeostasis and cancer
[version 1; peer review: 2 approved]
Silvia Fontenete, Daniel Peña-Jimenez, Mirna Perez-Moreno
Peer Reviewers Barry Gumbiner; Carien Niessen
  • Funders
  • Worldwide Cancer Research
  • Ministerio de Economía y Competitividad/European Regional Development Fund (ERDF), European Union
PUBLISHED 27 Jun 2017
https://doi.org/10.12688/f1000research.9416.3
Research Article metrics
Revised
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
[version 3; peer review: 1 approved, 2 approved with reservations]
Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Peer Reviewers Antonio Rosato; Robert D. Finn; David M. Kristensen
LATEST VERSION PUBLISHED 27 Jun 2017
https://doi.org/10.12688/f1000research.10962.1
Review metrics
Recent advances in methods to assess the activity of the kinome
[version 1; peer review: 3 approved]
Maria Radu, Jonathan Chernoff
Peer Reviewers Roger Daly; David Adams; Ed Manser
  • Funders
  • Congressionally Directed Medical Research Programs
  • National Cancer Institute
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.11370.1
Review metrics
Epithelial spindle orientation diversities and uncertainties: recent developments and lingering questions
[version 1; peer review: 3 approved]
Lindsey Seldin, Ian Macara
Peer Reviewers Takashi Toda; Christopher A. Johnston; Jun Zhou
  • Funder
  • National Cancer Institute, National Institutes of Health, Department of Health & Human Services.
PUBLISHED 23 Jun 2017
https://doi.org/10.12688/f1000research.11379.1
Review metrics
Chemical genetics and strigolactone perception
[version 1; peer review: 2 approved]
Shelley Lumba, Michael Bunsick, Peter McCourt
Peer Reviewers David C Nelson; Steven Smith
  • Funder
  • National Science & Engineering Research Council of Canada
PUBLISHED 22 Jun 2017
https://doi.org/10.12688/f1000research.11355.2
Software Tool Article metrics
Revised
Arkas: Rapid reproducible RNAseq analysis
[version 2; peer review: 2 approved]
Anthony R. Colombo, Timothy J. Triche Jr, Giridharan Ramsingh
Peer Reviewers Harold Pimentel; Ted Abel and Marie Gaine
  • Funders
  • Stop Cancer
  • Illumina
  • Tower Cancer Research Foundation
  • Leukemia and Lymphoma Society
LATEST VERSION PUBLISHED 21 Jun 2017
https://doi.org/10.12688/f1000research.10571.2
Research Article metrics
Revised
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
[version 2; peer review: 2 approved]
Jason L Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu-Jie Wang, David Buck, Kin Fai Au
Peer Reviewers Jingyi Jessica Li; Hagen Tilgner
  • Funders
  • University of Iowa
  • Multidisciplinary Lung Research Career Development Program
  • National Natural Science Foundation of China
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 19 Jun 2017
https://doi.org/10.12688/f1000research.11581.1
Review metrics
Recent advances in high-throughput approaches to dissect enhancer function
[version 1; peer review: 3 approved]
David Santiago-Algarra, Lan T.M. Dao, Lydie Pradel, Alexandre España, Salvatore Spicuglia
Peer Reviewers Alvaro Rada-Iglesias; Douglas Vernimmen; Bart Deplancke
  • Funders
  • ARC
  • CONACYT-Mexico
  • Vietnam International Education Development
  • Plan Cancer
PUBLISHED 19 Jun 2017
https://doi.org/10.12688/f1000research.11111.2
Research Article metrics
Revised
A putative antiviral role of plant cytidine deaminases
[version 2; peer review: 2 approved]
Susana Martín, José M. Cuevas, Ana Grande-Pérez, Santiago F. Elena
Peer Reviewers Pedro Gomez; Israel Pagán
  • Funders
  • European Social Fund
  • Ministerio de Ciencia e Innovación
  • Consejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía
LATEST VERSION PUBLISHED 15 Jun 2017
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