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https://doi.org/10.12688/f1000research.165281.1
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DataMap: A Browser-based App for Visualizing High-Dimensional Data
[version 1; peer review: 1 approved with reservations]
Xijin Ge
Peer Reviewers Guangchuang Yu
  • Funders
  • National Institute of General Medical Sciences
  • National Human Genome Research Institute
PUBLISHED 10 Nov 2025
https://doi.org/10.12688/f1000research.170665.1
Software Tool Article metrics
Sixth Annual BCM Hackathon on Structural Variation and Pangenomics
[version 1; peer review: 2 approved with reservations]
Farhang Jaryani, Bishnu Adhikar, Shaghayegh Beheshti, Sarah Fross, Jędrzej Kubica, Jen-Yu Wang, Aanuoluwa Adekoya, Daniel P. Agustinho, Oluwaseun Akinsulire, Francesco Andreace, Abolhassan Bahari, Christian Brueffer, Siyuan Cheng, Jonah Cullen, Kristen Curry, Ryan Doughty, Adam English, Neda Ghohabi Esfahani, Natali Gulbahce, Tina Han, Nha Van Huynh, Michal Izydorczyk, Minal Jamsandekar, Emrah Kacar, Arthur Shem Kasambula, Rupesh K. Kesharwani, Divya Kalra, Shwetha V Kumar, Iva Kotásková, Callum MacPhillamy, Sina Majidian, Mauricio Moldes, Abraham (Jon) Moller, Rajarshi Mondal, Eleni Mourouzidou, Michael Nute, Dmitrii Olisov, Anika Pallapothu, Meghana Ram, Marcus Chan Hua Rui, Philippe Sanio, Russel T. Santos, Michael Olufemi, Narges SangaraniPour, Moustafa Shokrof, Sam Stroupe, Gobikrishnan Subramaniam, Todd J. Treangen, Pankhuri Wanjari, Umran Yaman, Farha zain, Xinchang Zheng, Fritz J Sedlazeck, Ben Busby
Peer Reviewers Istvan Albert; Colin Diesh
  • Funders
  • Shwetha V Kumar is supported by CPRIT grant #RP210037 (PI Aaron Thrift)
  • Ryan Doughty is supported by a training fellowship from the Gulf Coast Consortia, on the NLM Training Program in Biomedical Informatics & Data Science (T15LM007093)
  • Sarah Fross is supported by a training grant from the National Institutes of Health under Award Number 5T32GM135748-04.
  • Sedlazeck NIH grant: 1UG3NS132105-01, 1U01HG011758-01
  • Jędrzej Kubica is supported by the Ministry of Science and Higher Education (Poland) as a project under the program Excellence Initiative – Research University (2020–2026) (decision no.: IV.2.3./30/2024) and the France 2030 state funding managed by the National Research Agency with the reference
  • Shaghayegh Beheshti is supported by a training grant from the National Institutes of Health under Award Number 5T32GM139534-04 and NHGRI U01 HG011758.
  • The research was supported by Cancer Prevention and Research Institute of Texas under grant number: #RP210037
PUBLISHED 07 Nov 2025
https://doi.org/10.12688/f1000research.171593.1
Research Article metrics AWAITING PEER REVIEW
Analysis of skin mycobiota associated with alopecia in captive cynomolgus macaques (Macaca fascicularis) based on Oxford Nanopore Technologies
[version 1; peer review: awaiting peer review]
Natthanit Phokkhasub, Suthida Visedthorn, Pavit Klomkliew, Prangwalai Chanchaem, Kittima Phutthawong, Taratorn Kemthong, Vorthon Sawaswong, Ariya Khamwut, Suchinda Malaivijitnond, Sunchai Payungporn
Peer Reviewers Invited
  • Funders
  • The 90th Anniversary of Chulalongkorn University Ratchadaphiseksomphot Fund
  • The National Research Council of Thailand (NRCT)
PUBLISHED 07 Nov 2025
https://doi.org/10.12688/f1000research.166678.2
Research Article metrics
Revised
Exploring the Potential of Peptides Derived from the Coelomic Fluid of Echinometra lucunter Targeting Inflammatory Cytokines in Placental Syndromes: In Silico Study
[version 2; peer review: 2 approved]
Defrin Defrin, Arif Birru, Kevin Cuandra, Ratna Puspita, I Widnyana, Nasya Aqilah, Arzita Fadhilla, Winka Suwardjo, Amanda Amalia, Kalaj Haq, Tirza Amaris, Feroz Aldino, Shabrina Ekitasari, Bernice Sirait, Nathania Kristaningtyas, Rizka Wilanda, Made Ananda
Peer Reviewers Aldi Tamara Rahman; Norbertus Marcell Prayogi
LATEST VERSION PUBLISHED 06 Nov 2025
https://doi.org/10.12688/f1000research.171123.1
Research Article metrics
Identification of Pathogenic PKHD1 Variants in Infants with Autosomal Recessive Polycystic Kidney Disease from the Dhofar Region, Oman
[version 1; peer review: 2 approved]
Intisar Al Alawi, Maha Al Awadi, Fatma Al Awaid, Joshua Pillai, Matthew Sampson, Juliana E. Arcila Galvis, Ashwaq Al Maimani, Zainab Al Hashmi, John A. Sayer
Peer Reviewers Hana Yang; Consolato M Sergi
  • Funders
  • Kidney Research UK
  • LifeArc
  • Horizon Europe
  • Medical Research Council
PUBLISHED 05 Nov 2025
https://doi.org/10.12688/f1000research.164618.3
Brief Report metrics
Revised
Gas Chromatography-Mass spectrometry (GC-MS) Revealed Bioactive Constituents of Brassica oleracea var. viridis (Collard Greens) Used to Treat Male Infertility in Uganda.
[version 3; peer review: 1 approved, 2 approved with reservations]
Emmanuel Orire Ikuomola, Daniel Udofia Owu, Victor Otu Oka, Sunday Agba Bisong, Ugwu Okechukwu Paul-Chima, Patrick Maduabuchi Aja
Peer Reviewers Faten Hameed Thamer; Adeoye-Isijola Morenike; Amanulla Khan
LATEST VERSION PUBLISHED 05 Nov 2025
https://doi.org/10.12688/f1000research.155447.2
Review metrics
Revised
Impact of Climate Change on Human Lactation: Biological, Socioeconomic, and Public Health Implications
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Daryl O. Traylor, Winter Cameron, Brianna Clark, Eboni Anderson, Robert Henderson, Lena Clark, Michael Taylor, Cierra Swington
Peer Reviewers Laura J Brown; Cecília Tomori; Pramila Menon
LATEST VERSION PUBLISHED 04 Nov 2025
https://doi.org/10.12688/f1000research.157091.2
Research Article metrics
Revised
Analyzing Aloe vera and Avocado Seed Extracts for Antioxidants, Saponins, Tannins, Flavonoids, and Alkaloids Using the UV-VIS Spectrophotometric Method
[version 2; peer review: 5 approved with reservations]
Nur Ariska Nugrahani, Cecilya Nella Yuppy Anggraeni, Noor Hafida Widyastuti, Mahmud Kholifa
Peer Reviewers Didi Nurhadi Illian; Mona Luciana Gălăţanu; Ahmad Royani; Thi-Van Nguyen; Zehra Tekin
  • Funder
  • None
LATEST VERSION PUBLISHED 04 Nov 2025
https://doi.org/10.12688/f1000research.169794.1
Research Article metrics
Algorithmic targeting in the Iranian–Israeli confrontation: Technical realities, legal thresholds, and the boundaries of human control
[version 1; peer review: 1 approved with reservations]
Lamia faris
Peer Reviewers Elshan Hashimov
PUBLISHED 03 Nov 2025
https://doi.org/10.12688/f1000research.170933.1
Research Article metrics AWAITING PEER REVIEW
How to Achieve Near-Perfect Gender Inference Accuracy in Medicine Using ChatGPT
[version 1; peer review: awaiting peer review]
Paul Sebo
Peer Reviewers Invited
PUBLISHED 03 Nov 2025
https://doi.org/10.12688/f1000research.172049.1
Systematic Review metrics
Enterprise Architecture in Higher Education for Digital Transformation: An Integrative Review for Fragile Contexts with Application to Yemen
[version 1; peer review: 1 approved with reservations]
Ayman Almoqry, Nabeel ALSohybe
Peer Reviewers Nur Azaliah Abu Bakar
PUBLISHED 31 Oct 2025
https://doi.org/10.12688/f1000research.171494.1
Systematic Review metrics
Artificial Intelligence Adoption as a Driver of Innovation and Competitiveness in SMEs: A Bibliometric and Systematic Review
[version 1; peer review: 2 approved]
Yohannes Yesuf, Ziska Fields
Peer Reviewers Erstu kassa; Arjita Jain
  • Funder
  • N/A
PUBLISHED 31 Oct 2025
https://doi.org/10.12688/f1000research.171468.1
Software Tool Article metrics
DTAShiny: An Interactive R Shiny Application for Diagnostic Test Accuracy Analysis and Visualization
[version 1; peer review: 3 approved with reservations]
Syed Faizaan Shah Quadri, Ahmad Mahmood, Joanne Lac
Peer Reviewers Christos Nakas; Budi Sunaryo; Pedro Castaneda
PUBLISHED 30 Oct 2025
https://doi.org/10.12688/f1000research.156276.3
Research Article metrics
Revised
Assessment of water quality in the piped water supply system by using Water Quality index method
[version 3; peer review: 1 approved, 5 approved with reservations]
Kshyana Prava Samal, Ashok Kumar Tarai
Peer Reviewers Taj Muhammad Jahangir; Bouselsal Boualem; Sudhir K Srivastava; Majeed Mattar Ramal; Md. Ripaj Uddin; Eden T. Wasehun
  • Funders
  • Indian Council of Social science and Research
  • Kalinga Institute of Industrial Technology
LATEST VERSION PUBLISHED 30 Oct 2025
https://doi.org/10.12688/f1000research.169999.1
Study Protocol metrics
Combining implementation and data sciences to accelerate evidence integration into healthcare – ImpleMATE
[version 1; peer review: 2 approved with reservations]
Jeffery Chan, Janna Hastings, Gabriella Tiernan, Jeannie Paterson, Nigel Lovell, Luc Betbeder-Matibet, Patrick Kin Man Tung, Sarah Pink, Debora Lanzeni, Thomasina Donovan, Andrew Milat, Louisa Jorm, Carolyn Mazariego, Chi Zhang, Guillaume Fontaine, Stephanie Best, Georgina Kennedy, Susan Michie, Frank Lin, The ImpleMATE Network, Natalie Taylor
Peer Reviewers Yogeesh N; Tuan D. Pham
  • Funders
  • UNSW Research Infrastructure Scheme
  • UNSW-UTS Trustworthy Digital Society
  • MRFF Rapid Applied Research Translation grant
PUBLISHED 30 Oct 2025
https://doi.org/10.12688/f1000research.153918.1
Genome Note metrics
Chromosome-level genome assembly of the hamour (orange-spotted grouper), Epinephelus coioides
[version 1; peer review: 2 approved, 1 approved with reservations]
Razan Khalifa, Tim Bean, Dana Albatesh, Ronny van Aerle, Zenaba Kahtir, Zainab Hizam, Marta Gut, Francisco Câmara, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Eduarda Santos, Alexandra Leitão, Diana Minardi
Peer Reviewers Jayan Duminda M Senevirathna; Merly Escalona; Karim Gharbi
  • Funders
  • Spanish Government, Ministry of Science, Innovation and Universities and Generalitat de Catalunya through the Departament de Recerca i Universitats and Departament de Salut
  • Qatar National Research Fund
  • Roslin Institute Strategic Programme Award
PUBLISHED 29 Oct 2025
https://doi.org/10.12688/f1000research.170584.1
Research Article metrics
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 1; peer review: 2 approved with reservations]
Alejandra Clavijo-Giraldo, Sandra Uribe Soto, Andrés Gómez-Palacio
Peer Reviewers Renee Ali; Michael J Raupach
  • Funder
  • This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
PUBLISHED 28 Oct 2025
https://doi.org/10.12688/f1000research.170420.1
Review metrics
Advancing FAIR Biodiversity Data: Bioschemas Implementation in NFDI4Biodiversity
[version 1; peer review: 2 approved with reservations, 1 not approved]
Lars Möller, Marcus Ernst, David Fichtmüller, Claas-Thido Pfaff, Stefan Seifert, Naouel Karam, Cornelia Fürstenau, Uwe Schindler, Julius Witte, Christian Ebeling, Lorenz Reimer
Peer Reviewers Mathias Dillen; Sharif Islam; Franck Michel
  • Funder
  • German Research Foundation
PUBLISHED 27 Oct 2025
https://doi.org/10.12688/f1000research.167961.1
Software Tool Article metrics
RRORPair: An Interactive R/Shiny Dashboard for Comprehensive Risk Ratio and Odds Ratio Meta-Analysis
[version 1; peer review: 2 not approved]
Laiba Khan, Maham khan, Nijat Rzayev, Manpreet Kour, Andrew Woo, Parichatra Homhuan, Poe Hnin Phyu, Mahmood Ahmad, Touqeer Rana, Joanne Lac
Peer Reviewers Naomi Bradbury; Angel Garza Reyna
PUBLISHED 27 Oct 2025
https://doi.org/10.12688/f1000research.163959.1
Research Article metrics AWAITING PEER REVIEW
Advanced Numerical Methods for the Fisher-Kolmogorov Reaction-Diffusion Equation: A Quintic Hermite Splines Approach with Richardson Extrapolation
[version 1; peer review: awaiting peer review]
Kedir Aliyi Koroche
Peer Reviewers Invited
PUBLISHED 24 Oct 2025
201-220 of 5,605 ARTICLES
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