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https://doi.org/10.12688/f1000research.17743.5
Research Article metrics
Revised
Patient treatment pathways of multidrug-resistant tuberculosis cases in coastal South India: Road to a drug resistant tuberculosis center
[version 5; peer review: 2 approved, 1 approved with reservations]
Priya Rathi, Kalpita Shringarpure, Bhaskaran Unnikrishnan, Abhinav Pandey, Abhirami Nair
Peer Reviewers Sharath Burugina Nagaraja; Douglas Fraser Wares; Derrick Kimuli
LATEST VERSION PUBLISHED 08 Jul 2021
https://doi.org/10.12688/f1000research.40338.2
Research Article metrics
Revised
The diagnostic yield of whole exome sequencing as a first approach in consanguineous Omani renal ciliopathy syndrome patients
[version 2; peer review: 2 approved]
Intisar Al Alawi, Mohammed Al Riyami, Miguel Barroso-Gil, Laura Powell, Eric Olinger, Issa Al Salmi, John A. Sayer
Peer Reviewers Enza Maria Valente; Paraskevi Goggolidou
  • Funders
  • The Northern Counties Kidney Research Fund, UK
  • Kidney Research UK
  • The Ministry of Health, Oman
  • Early Postdoc Mobility Stipendium of the Swiss National Science Foundation
  • The Research Council Grant, Oman
  • Medical Research Council Discovery Medicine North Training Partnership
LATEST VERSION PUBLISHED 07 Jul 2021
https://doi.org/10.12688/f1000research.28052.2
Case Report metrics
Revised
Case Report: Mosaicism of a novel nonsense variant in the neurofibromin gene underlies a mosaic generalized NF1 phenotype
[version 2; peer review: 2 approved]
Hui Li Kwong, Yong-Kwang Tay, Ene-Choo Tan
Peer Reviewers Richard J. Antaya; Joshua Tay
  • Funder
  • National Medical Research Council, Ministry of Health, Singapore
LATEST VERSION PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.52878.1
Software Tool Article metrics
CHIPS: A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
[version 1; peer review: 2 approved with reservations, 2 not approved]
Len Taing, Gali Bai, Clara Cousins, Paloma Cejas, Xintao Qiu, Zachary T. Herbert, Myles Brown, Clifford A. Meyer, X. Shirley Liu, Henry W. Long, Ming Tang
Peer Reviewers Anqi Zhu; Yaqiang Cao; Robin H van der Weide; Chenxu Zhu
  • Funder
  • National Institute of Health
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.52268.1
Research Article metrics
Ehlers-Danlos syndrome kyphoscoliotic type 2 caused by mutations in the FKBP14 gene: an analysis of five cases
[version 1; peer review: 2 approved]
Alla Nikolaevna Semyachkina, Ekaterina Alexandrovna Nikolaeva, Nailya Mansurovna Galeeva, Alexander Vladimirovich Polyakov, Maria Andreevna Kurnikova, Vera Аlexandrovna Belova, Irina Valerievna Shulyakova, Ilya Sergeevich Dantsev, Goar Vladimirovna Dzhivanshiryan
Peer Reviewers Matthias Baumann; Tomoki Kosho
  • Funder
  • Ministry of Health of the Russian Federation
PUBLISHED 25 Jun 2021
https://doi.org/10.12688/f1000research.53137.1
Research Article metrics
Characterization of SARS-CoV-2 East Java isolate, Indonesia
[version 1; peer review: 2 approved, 1 approved with reservations]
Fedik Abdul Rantam, Cita Rosita Sigit Prakoeswa, Damayanti Tinduh, Jusak Nugraha, Helen Susilowati, Andi Yasmin Wijaya, Ni Nyoman Tri Puspaningsih, Dwiyanti Puspitasari, Dominicus Husada, Neneng Dewi Kurniati, Aryati Aryati
Peer Reviewers Aulanni’am Aulanni'am; Lidia Audrey Rocha Valadas; Marina Derkho
  • Funder
  • Ministry of Research and Technology; Ministry of Health of the Republic of Indonesia
PUBLISHED 16 Jun 2021
https://doi.org/10.12688/f1000research.28510.2
Research Article metrics
Revised
Pan-cancer chromatin analysis of the human vtRNA genes uncovers their association with cancer biology
[version 2; peer review: 2 approved, 1 approved with reservations]
Rafael Sebastián Fort, María Ana Duhagon
Peer Reviewers Daniele Hasler; Deepanwita Sengupta; Yong Sun Lee
  • Funders
  • Agencia Nacional de Investigación e Innovación (ANII)
  • Comision Academica de Posgrado, UDELAR
  • Comisión Sectorial de Investigación Científica (CSIC, UDELAR)
  • Programa para el Desarrollo de las Ciencias Basicas (PEDECIBA, MEC)
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.53636.1
Case Report metrics
Case Report: The first familial hCG syndrome in a Chinese family
[version 1; peer review: 2 approved]
Ling-Yin Hung, Mei-Tik Leung, Toby Chun-Hei Chan, Hoi-Ning Cheung, Wai-Hon Li, Yui-Shing Cheung, Assumpta Sze-Man Wong, Chi-Chung Shek, Sammy Pak-Lam Chen
Peer Reviewers Weldon Chiu; Ravi Krishna Cheemakurthi
PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.25369.1
Opinion Article metrics
Moving forward with forward genetics: A summary of the INFRAFRONTIER Forward Genetics Panel Discussion
[version 1; peer review: 1 approved, 2 approved with reservations]
Asrar Ali Khan, Michael Raess, Martin Hrabe de Angelis
Peer Reviewers Martin S Denzel; Anton Wutz and Corinne Kaufmann; Camron D Bryant
  • Funder
  • Horizon 2020
PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52350.2
Software Tool Article metrics
Revised
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
[version 2; peer review: 2 approved]
Thaís A.R. Ramos, Nilbson R.O. Galindo, Raúl Arias-Carrasco, Cecília F. da Silva, Vinicius Maracaja-Coutinho, Thaís G. do Rêgo
Peer Reviewers Gilderlanio Araújo; Andre Yoshiaki Kashiwabara
  • Funders
  • ANID-FONDECYT
  • ACCDiS
  • ANID-PAI
  • ANID-FONDAP
  • CAPES
LATEST VERSION PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.20446.2
Method Article metrics
Revised
Unsupervised gene selection for predicting cell spatial positions in the Drosophila embryo
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Yang Chen, Disheng Mao, Yuping Zhang, Zhengqing Ouyang
Peer Reviewers Xianwen Ren; Mark S. Cembrowski and Larissa Kraus; Yen-Chung Chen; Saumitra Dey Choudhury; Komal Kumar Bollepogu Raja
  • Funder
  • Univerisity of Connecitcut
LATEST VERSION PUBLISHED 07 Jun 2021
https://doi.org/10.12688/f1000research.52811.1
Software Tool Article metrics
Exploiting the DepMap cancer dependency data using the depmap R package
[version 1; peer review: 2 approved with reservations]
Theo Killian, Laurent Gatto
Peer Reviewers Katharina Imkeller; Ashir Borah and James M. McFarland
  • Funder
  • Université Catholique de Louvain
PUBLISHED 25 May 2021
https://doi.org/10.12688/f1000research.25148.2
Research Article metrics
Revised
First draft genome assembly of the desert locust, Schistocerca gregaria
[version 2; peer review: 3 approved]
Heleen Verlinden, Lieven Sterck, Jia Li, Zhen Li, Anna Yssel, Yannick Gansemans, Rik Verdonck, Michiel Holtof, Hojun Song, Spencer T. Behmer, Gregory A. Sword, Tom Matheson, Swidbert R. Ott, Dieter Deforce, Filip Van Nieuwerburgh, Yves Van de Peer, Jozef Vanden Broeck
Peer Reviewers Uwe Homberg; Surya Saha; Joshua B. Benoit
  • Funders
  • U.S. Department of Agriculture
  • University of Pretoria
  • KU Leuven
  • Fonds Wetenschappelijk Onderzoek
  • Universiteit Gent
  • Biotechnology and Biological Sciences Research Council
  • National Science Foundation
LATEST VERSION PUBLISHED 21 May 2021
https://doi.org/10.12688/f1000research.51433.1
Case Report metrics
Case Report: Guitarist’s cramp as the initial manifestation of dopa-responsive dystonia with a novel heterozygous GCH1 mutation
[version 1; peer review: 2 approved, 1 approved with reservations]
Takafumi Hasegawa, Tatsuhiko Hosaka, Ryuhei Harada, Ichiro Kawahata, Kyoko Hoshino, Naoto Sugeno, Akio Kikuchi, Masashi Aoki
Peer Reviewers Hiroshi Ichinose; Taku Hatano; Juei-Jueng Lin
  • Funders
  • The Kawano Masanori Memorial Foundation for Promotion of Pediatrics
  • Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.52141.1
Software Tool Article metrics AWAITING PEER REVIEW
Restriction site-associated DNA from Python-implemented Digestion Simulations (RApyDS): a companion tool for RAD sequencing experimental design
[version 1; peer review: awaiting peer review]
Kristianne Arielle Gabriel, Maria Rejane Nepacina, Francis Tablizo, Carlo Lapid, Mark Lenczner Mendoza, Daniella Jean Pamulaklakin, Jobeth Domingo, Marc Jermaine Pontiveros, Hannah Mae Magno, Joshua Gregor Dizon, El King Morado, Jan Michael Yap
Peer Reviewers Invited
  • Funder
  • Philippine Council for Industry, Energy and Emerging Technology Research and Development of the Department of Science and Technology
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.51874.1
Research Article metrics
Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis
[version 1; peer review: 1 approved, 2 approved with reservations]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Jeffrey B. Jones; José Escudero; Patrick Eichenberger
  • Funders
  • IARPA
  • Office of the Director of National Intelligence
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.50738.2
Research Article metrics
Revised
Risk factors for major external structural birth defects among children in Kiambu County, Kenya: a case-control study
[version 2; peer review: 2 approved, 1 approved with reservations]
George N. Agot, Marshal M. Mweu, Joseph K. Wang'ombe
Peer Reviewers Yoseph Worku; Marcia L. Feldkamp; Rogath Kishimba
LATEST VERSION PUBLISHED 30 Apr 2021
https://doi.org/10.12688/f1000research.28608.2
Method Article metrics
Revised
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
[version 2; peer review: 2 approved]
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit J. Kunath, Phillip B. Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Peer Reviewers Caitlin Simopoulos; Won Kyong Cho
  • Funders
  • National Cancer Institute
  • University of Minnesota
  • National Science Foundation
LATEST VERSION PUBLISHED 19 Apr 2021
https://doi.org/10.12688/f1000research.28439.1
Data Note metrics
CFM: a database of experimentally validated protocols for chemical compound-based direct reprogramming and transdifferentiation
[version 1; peer review: 2 approved with reservations]
Alexey Sizykh, Khalimat Murtazalieva, Yulia Vyshkvorkina, Alexey Stupnikov, Yulia A. Medvedeva
Peer Reviewers Erdem B. Dashinimaev; Stephanie M. Willerth
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 16 Apr 2021
https://doi.org/10.12688/f1000research.38156.1
Research Article metrics
Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
[version 1; peer review: 2 approved]
Xiao Ma, Jeanine L. Olsen, Thorsten B.H. Reusch, Gabriele Procaccini, Dave Kudrna, Melissa Williams, Jane Grimwood, Shanmugam Rajasekar, Jerry Jenkins, Jeremy Schmutz, Yves Van de Peer
Peer Reviewers Jarkko Salojärvi; Vratislav Peska
  • Funder
  • the DOE-Joint Genome Institute, Berkeley, CA, USA
PUBLISHED 15 Apr 2021
221-240 of 2,028 ARTICLES
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