All Research Articles

Home Browse Articles
41-60 of 369 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.73600.2
Software Tool Article metrics
Revised
Doublet identification in single-cell sequencing data using scDblFinder
[version 2; peer review: 2 approved]
Pierre-Luc Germain, Aaron Lun, Carlos Garcia Meixide, Will Macnair, Mark D. Robinson
Peer Reviewers Zev J. Gartner and Chris McGinnis; Dennis Kostka and Hannah Schriever
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 16 May 2022
https://doi.org/10.12688/f1000research.76154.1
Software Tool Article metrics
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
[version 1; peer review: 2 approved with reservations]
Jacob Hanimann, Holger Moch, Martin Zoche, Abdullah Kahraman
Peer Reviewers James D Stephenson; Laurens van de Wiel
PUBLISHED 31 Mar 2022
https://doi.org/10.12688/f1000research.83714.1
Software Tool Article metrics
pTITAN2: Permutation of treatment labels and Threshold Indicator Taxa ANalysis
[version 1; peer review: 1 approved, 1 not approved]
Stephanie Figary, Peter DeWitt, Naomi Detenbeck
Peer Reviewers Cajo J. F. ter Braak; Jonathan A Walter
  • Funder
  • U.S. Environmental Protection Agency
PUBLISHED 02 Mar 2022
https://doi.org/10.12688/f1000research.94159.1
Software Tool Article metrics
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.107925.1
Software Tool Article metrics
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks
[version 1; peer review: 2 approved]
Jefferson Daniel Suquilanda-Pesántez, Evelyn Dayana Aguiar Salazar, Diego Almeida-Galárraga, Graciela Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño Gomezjurado
Peer Reviewers Juan Onofre Orozco-López; Lorena Isabel Barona López
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.107886.1
Editorial metrics NOT PEER REVIEWED
Lessons from a ten-year-long journey: building a student-driven computational biology society across Turkey
[version 1; peer review: not peer reviewed]
Yasin Kaya, Tülay Karakulak, Cemil Can Saylan, E. Ravza Gür, Engin Tatlıdil, Sevilay Güleşen, Fatma Betül Dinçaslan, Handan Melike Dönertaş
  • Funder
  • ISCB Student Council
PUBLISHED 26 Jan 2022
https://doi.org/10.12688/f1000research.76828.1
Software Tool Article metrics
The software for interactive evaluation of mass spectrometric imaging heterogeneity
[version 1; peer review: 1 approved with reservations]
Evgeny Zhvansky, Ekaterina Zhdanova, Maxim Belenikin, Maria Shamraeva, Sergei Silkin, Konstantin Bocharov, Anatoly A. Sorokin
Peer Reviewers Jean-Nicolas Audinot
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 25 Jan 2022
https://doi.org/10.12688/f1000research.51900.2
Software Tool Article metrics
Revised
ContactJ: Characterization of lipid droplet-mitochondrial contacts using fluorescence microscopy and image analysis
[version 2; peer review: 2 approved]
Gemma Martín, Marta Bosch, Elisenda Coll, Robert G. Parton, Albert Pol, Maria Calvo
Peer Reviewers Mafalda Sousa and Maria Azevedo; Gadea Mata Martinez
  • Funder
  • European Cooperation in Science and Technology
LATEST VERSION PUBLISHED 18 Jan 2022
https://doi.org/10.12688/f1000research.52026.2
Method Article metrics
Revised
A deep learning segmentation strategy that minimizes the amount of manually annotated images
[version 2; peer review: 2 approved]
Thierry Pécot, Alexander Alekseyenko, Kristin Wallace
Peer Reviewers Alice Lucas; Romain F Laine
  • Funder
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 17 Jan 2022
https://doi.org/10.12688/f1000research.26128.2
Method Article metrics
Revised
Space-log: a novel approach to inferring gene-gene net-works using SPACE model with log penalty
[version 2; peer review: 2 approved, 1 approved with reservations]
Qian (Vicky) Wu, Wei Sun, Li Hsu
Peer Reviewers Yuying Xie and Yuning Hao; Chi Song; Jessie Jeng
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 05 Jan 2022
https://doi.org/10.12688/f1000research.53821.2
Software Tool Article metrics
Revised
snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data
[version 2; peer review: 2 approved, 1 approved with reservations]
Christina Vasilopoulou, Benjamin Wingfield, Andrew P. Morris, William Duddy
Peer Reviewers Andries T. Marees; Stephanie M. Gogarten; Anna Ulrich
  • Funders
  • Northern Ireland Public Health Agency (HSC R&D)
  • EU Regional Development Fund (ERDF) EU Sustainable Competitiveness Programme for Northern Ireland
LATEST VERSION PUBLISHED 29 Nov 2021
https://doi.org/10.12688/f1000research.72890.3
Research Article metrics
Revised
Improving the data access control using blockchain for healthcare domain
[version 3; peer review: 2 approved]
Olaosebikan Tahir Yinka, Su-Cheng Haw, Timothy Tzen Vun Yap, Samini Subramaniam
Peer Reviewers Huo Chong Ling; Heru Agus Santoso
LATEST VERSION PUBLISHED 19 Nov 2021
https://doi.org/10.12688/f1000research.54533.2
Software Tool Article metrics
Revised
RNfuzzyApp: an R shiny RNA-seq data analysis app for visualisation, differential expression analysis, time-series clustering and enrichment analysis
[version 2; peer review: 3 approved]
Margaux Haering, Bianca H Habermann
Peer Reviewers Oliver Hahn; Rhonda Bacher; Anita Grigoriadis
  • Funder
  • Agence Nationale de la Recherche
LATEST VERSION PUBLISHED 12 Nov 2021
https://doi.org/10.12688/f1000research.72865.1
Research Article metrics
The impact of testing and treatment on the dynamics of Hepatitis B virus
[version 1; peer review: 2 approved]
Olajumoke Oludoun, Olukayode Adebimpe, James Ndako, Michael Adeniyi, Oluwakemi E. Abiodun, Babatunde Gbadamosi
Peer Reviewers Sulyman Olakunle Salawu; Segun oke
  • Funder
  • There is no funding for this research
PUBLISHED 17 Sep 2021
https://doi.org/10.12688/f1000research.52341.2
Research Article metrics
Revised
Substantial impact of post-vaccination contacts on cumulative infections during viral epidemics
[version 2; peer review: 2 approved]
Nash Rochman, Yuri I Wolf, Eugene V Koonin
Peer Reviewers Sebastian Maximilian Schloer; Fyodor A. Kondrashov
  • Funder
  • U.S. Department of Health and Human Services
LATEST VERSION PUBLISHED 26 Aug 2021
https://doi.org/10.12688/f1000research.54418.1
Software Tool Article metrics
Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality
[version 1; peer review: 2 approved]
Davide Albanese, Claudio Donati
Peer Reviewers Thomas S. B. Schmidt, Anthony Fullam and Askarbek Orakov; Denis Baurain
  • Funder
  • Autonomous Province of Trento (Accordo di Programma)
PUBLISHED 17 Aug 2021
https://doi.org/10.12688/f1000research.54436.1
Research Article metrics
Towards recognizing the mechanisms of effects evoked in living organisms by static magnetic field. Numerically simulated effects of the static magnetic field upon simple inorganic molecules.
[version 1; peer review: 1 approved with reservations]
Wojciech Ciesielski, Tomasz Girek, Zdzisław Oszczęda, Jacek Soroka, Piotr Tomasik
Peer Reviewers Hakki Gurhan
PUBLISHED 20 Jul 2021
https://doi.org/10.12688/f1000research.27868.3
Method Article metrics
Revised
WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data
[version 3; peer review: 2 approved]
Konstantinos Geles, Domenico Palumbo, Assunta Sellitto, Giorgio Giurato, Eleonora Cianflone, Fabiola Marino, Daniele Torella, Valeria Mirici Cappa, Giovanni Nassa, Roberta Tarallo, Alessandro Weisz, Francesca Rizzo
Peer Reviewers Juan Pablo Tosar; Wen Yao
  • Funders
  • Italian Association for Cancer Research
  • Ministero dell’Istruzione, dell’Università e della Ricerca
  • Horizon 2020
  • Regione Campania
LATEST VERSION PUBLISHED 12 Jul 2021
https://doi.org/10.12688/f1000research.26977.2
Research Article metrics
Revised
TAPAS: Towards Automated Processing and Analysis of multi-dimensional bioimage data
[version 2; peer review: 2 approved]
Jean-François Gilles, Thomas Boudier
Peer Reviewers Robert Haase; Lit-Hsin Loo
LATEST VERSION PUBLISHED 02 Jul 2021
41-60 of 369 ARTICLES
Previous Next
PUBLISH YOUR RESEARCH
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
SUBMIT AN ARTICLE
See guidelines and policies.
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.