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https://doi.org/10.12688/f1000research.73240.1
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Neural matrix factorization++ based recommendation system
[version 1; peer review: 1 approved, 2 approved with reservations]
Kyle Ong, Kok-Why Ng, Su-Cheng Haw
Peer Reviewers Dino Caesaron; Khanh Luong; Zhigang Liu
  • Funder
  • TM Research & Development from Telekom Malaysia, Malaysia
PUBLISHED 25 Oct 2021
https://doi.org/10.12688/f1000research.73332.1
Method Article metrics
Health status classification model for medical adherence system in retirement township
[version 1; peer review: 1 not approved]
Abubaker Faisal Abubaker Sherif, Wooi Haw Tan, Chee Pun Ooi, Yi Fei Tan
Peer Reviewers Jesper Mølgaard
  • Funder
  • Multimedia University
PUBLISHED 20 Oct 2021
https://doi.org/10.12688/f1000research.22202.3
Method Article metrics
Revised
Applying machine learning EEG signal classification to emotion‑related brain anticipatory activity
[version 3; peer review: 2 approved, 1 approved with reservations]
Marco Bilucaglia, Gian Marco Duma, Giovanni Mento, Luca Semenzato, Patrizio E. Tressoldi
Peer Reviewers Zahid Halim; Rajesh K Tripathy; Alessandro Bruno
LATEST VERSION PUBLISHED 13 Oct 2021
https://doi.org/10.12688/f1000research.26997.2
Review metrics
Revised
AI in healthcare: A narrative review
[version 2; peer review: 1 approved, 1 not approved]
Antti Väänänen, Keijo Haataja, Katri Vehviläinen-Julkunen, Pekka Toivanen
Peer Reviewers Dipak Kalra; Marko Jäntti
  • Funder
  • European Regional Development Fund
LATEST VERSION PUBLISHED 08 Oct 2021
https://doi.org/10.12688/f1000research.72980.1
Research Article metrics AWAITING PEER REVIEW
Spatio-temporal deep learning model for distortion classification in laparoscopic video
[version 1; peer review: awaiting peer review]
Nouar AlDahoul, Hezerul Abdul Karim, Abdulaziz Saleh Ba Wazir, Myles Joshua Toledo Tan, Mohammad Faizal Ahmad Fauzi
Peer Reviewers Invited
  • Funder
  • Multimedia University
PUBLISHED 05 Oct 2021
https://doi.org/10.12688/f1000research.73026.1
Research Article metrics
Optimised deep neural network model to predict asthma exacerbation based on personalised weather triggers
[version 1; peer review: 3 approved]
Radiah Haque, Sin-Ban Ho, Ian Chai, Adina Abdullah
Peer Reviewers Mark Elshaw; Meei Hao Hoo; Kwan-Yong Sim
  • Funder
  • Fundamental Research Grant Scheme, Malaysia
PUBLISHED 10 Sep 2021
https://doi.org/10.12688/f1000research.51755.2
Review metrics
Revised
Calcium imaging analysis – how far have we come?
[version 2; peer review: 3 approved]
Miranda Robbins, Charles N. Christensen, Clemens F. Kaminski, Marta Zlatic
Peer Reviewers Christopher Rowlands and Isabell Whiteley; William Zeiger; Anubhuti Goel
LATEST VERSION PUBLISHED 26 Aug 2021
https://doi.org/10.12688/f1000research.52350.2
Software Tool Article metrics
Revised
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
[version 2; peer review: 2 approved]
Thaís A.R. Ramos, Nilbson R.O. Galindo, Raúl Arias-Carrasco, Cecília F. da Silva, Vinicius Maracaja-Coutinho, Thaís G. do Rêgo
Peer Reviewers Gilderlanio Araújo; Andre Yoshiaki Kashiwabara
  • Funders
  • ANID-FONDECYT
  • ACCDiS
  • ANID-PAI
  • ANID-FONDAP
  • CAPES
LATEST VERSION PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52549.1
Method Article metrics
Supervised topic modeling for predicting molecular substructure from mass spectrometry
[version 1; peer review: 2 approved with reservations]
Gabriel K. Reder, Adamo Young, Jaan Altosaar, Jakub Rajniak, Noémie Elhadad, Michael Fischbach, Susan Holmes
Peer Reviewers Joe Wandy; Hunter N B Moseley
  • Funder
  • National Institutes of Health
PUBLISHED 19 May 2021
https://doi.org/10.12688/f1000research.27384.1
Software Tool Article metrics
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features
[version 1; peer review: 1 approved with reservations, 1 not approved]
Derek Reiman, Ahmed Metwally, Jun Sun, Yang Dai
Peer Reviewers Braden T Tierney; Boyang JI
PUBLISHED 09 Mar 2021
https://doi.org/10.12688/f1000research.25877.2
Software Tool Article metrics
Revised
Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning
[version 2; peer review: 1 approved, 1 approved with reservations]
Caitlin E. Coombes, Zachary B. Abrams, Samantha Nakayiza, Guy Brock, Kevin R. Coombes
Peer Reviewers Julia Wrobel; Justin Mower and Andrew Zimolzak
  • Funders
  • National Center for Advancing Translational Sciences
  • National Cancer Institute
LATEST VERSION PUBLISHED 05 Mar 2021
https://doi.org/10.12688/f1000research.50798.1
Software Tool Article metrics
Interactive biomedical segmentation tool powered by deep learning and ImJoy
[version 1; peer review: 1 approved, 1 approved with reservations]
Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg
Peer Reviewers Jean-Yves Tinevez and Dmitry Ershov; Jan Funke
  • Funders
  • Knut and Alice Wallenberg Foundation
  • Swedish Research Council
  • LST Platform at KTH Royal Institute of Technology
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.26429.2
Software Tool Article metrics
Revised
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks
[version 2; peer review: 2 approved]
Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
Peer Reviewers Kim-Anh Lê Cao; Anais Baudot, Judith Lambert and Laurent Tichit
  • Funders
  • Villum Fonden
  • Horizon 2020
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Jan 2021
https://doi.org/10.12688/f1000research.28288.1
Research Article metrics
Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra
[version 1; peer review: 1 approved with reservations, 1 not approved]
Evgeny S. Zhvansky, Anatoly A. Sorokin, Denis S. Zavorotnyuk, Vsevolod A. Shurkhay, Vasiliy A. Eliferov, Denis S. Bormotov, Daniil G. Ivanov, Alexander A. Potapov
Peer Reviewers Sergei A. Moshkovskii; Konstantin Chingin
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 21 Jan 2021
https://doi.org/10.12688/f1000research.26880.2
Software Tool Article metrics
Revised
Recursive Cluster Elimination based Rank Function (SVM-RCE-R) implemented in KNIME
[version 2; peer review: 3 approved]
Malik Yousef, Burcu Bakir-Gungor, Amhar Jabeer, Gokhan Goy, Rehman Qureshi, Louise C. Showe
Peer Reviewers Marco Chierici; Osman Ugur Sezerman; Abhishek Kumar
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.26459.1
Software Tool Article metrics PEER REVIEW DISCONTINUED
Uncovering host-microbiome interactions in global systems with collaborative programming: a novel approach integrating social and data sciences
[version 1; peer review: 1 approved with reservations]
Jenna Oberstaller, Swamy Rakesh Adapa, Guy W. Dayhoff II, Justin Gibbons, Thomas E. Keller, Chang Li, Jean Lim, Minh Pham, Anujit Sarkar, Ravi Sharma, Agaz H. Wani, Andrea Vianello, Linh M. Duong, Chenggi Wang, Celine Grace F. Atkinson, Madeleine Barrow, Nathan W. Van Bibber, Jan Dahrendorff, David A. E. Dean, Omkar Dokur, Gloria C. Ferreira, Mitchell Hastings, Gregory S. Herbert, Khandaker Tasnim Huq, Youngchul Kim, Xiangyun Liao, XiaoMing Liu, Fahad Mansuri, Lynn B. Martin, Elizabeth M. Miller, Ojas Natarajan, Jinyong Pang, Francesca Prieto, Peter W. Radulovic, Vyoma Sheth, Matthew Sumpter, Desirae Sutherland, Nisha Vijayakumar, Rays H. Y. Jiang
Peer Reviewers Sucheta Tripathy
  • Funder
  • University of South Florida
PUBLISHED 17 Dec 2020
https://doi.org/10.12688/f1000research.15666.3
Research Article metrics
Revised
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
[version 3; peer review: 2 approved]
Angelo Duò, Mark D. Robinson, Charlotte Soneson
Peer Reviewers Jean Fan; Saskia Freytag
  • Funders
  • Swiss National Science Foundation
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 16 Nov 2020
https://doi.org/10.12688/f1000research.25501.1
Software Tool Article metrics
MSclassifier: median-supplement model-based classification tool for automated knowledge discovery
[version 1; peer review: 2 approved]
Emmanuel S. Adabor, George K. Acquaah-Mensah, Gaston K. Mazandu
Peer Reviewers Gregory Hart; Alper Uzun
  • Funders
  • Ghana Institute of Management and Public Administration
  • National Institutes of Health
  • African Institute for Mathematical Sciences
  • Massachusetts College of Pharmacy and Health Sciences
PUBLISHED 10 Sep 2020
https://doi.org/10.12688/f1000research.22090.2
Research Article metrics
Revised
Machine learning meets pKa
[version 2; peer review: 2 approved]
Marcel Baltruschat, Paul Czodrowski
Peer Reviewers Ruth Brenk; Johannes Kirchmair
LATEST VERSION PUBLISHED 27 Apr 2020
https://doi.org/10.12688/f1000research.22823.1
Method Article metrics
PRESa2i: incremental decision trees for prediction of Adenosine to Inosine RNA editing sites
[version 1; peer review: 1 approved with reservations, 2 not approved]
Alif Choyon, Ashiqur Rahman, Md. Hasanuzzaman, Dewan Md Farid, Swakkhar Shatabda
Peer Reviewers Avdesh Mishra; Shizuka Uchida; Xiaoyong Pan
PUBLISHED 16 Apr 2020
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