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https://doi.org/10.12688/f1000research.94159.1
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miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.27763.2
Brief Report metrics
Revised
Runcer-Necromancer: a method to rescue data from an interrupted run on MGISEQ-2000
[version 2; peer review: 1 approved, 1 approved with reservations]
Anna Pavlova, Vera Belova, Robert Afasizhev, Irina Bulusheva, Denis Rebrikov, Dmitriy Korostin
Peer Reviewers Simon Andrews; Sergey Knyazev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.28327.2
Review metrics
Revised
Novel antifungal agents in clinical trials
[version 2; peer review: 2 approved]
Samantha E. Jacobs, Panagiotis Zagaliotis, Thomas J. Walsh
Peer Reviewers Charalampos Antachopoulos; Shahram Mahmoudi
  • Funder
  • Henry Schueller Foundation
LATEST VERSION PUBLISHED 12 Jan 2022
https://doi.org/10.12688/f1000research.52159.2
Research Article metrics
Revised
Experimental-analytical approach to assessing mechanosensitive cartilage blood marker kinetics in healthy adults: dose-response relationship and interrelationship of nine candidate markers
[version 2; peer review: 2 approved]
Simon Herger, Werner Vach, Anna-Maria Liphardt, Corina Nüesch, Christian Egloff, Annegret Mündermann
Peer Reviewers Ali Mobasheri; Anne-Christine Bay-Jensen
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Department of Orthopaedics and Traumatology, University Hospital Basel
  • MEDA Pharma GmbH & Co.KG (A Mylan Company)
LATEST VERSION PUBLISHED 11 Jan 2022
https://doi.org/10.12688/f1000research.74836.1
Method Article metrics
Slinker: Visualising novel splicing events in RNA-Seq data
[version 1; peer review: 3 approved]
Breon Schmidt, Marek Cmero, Paul Ekert, Nadia Davidson, Alicia Oshlack
Peer Reviewers George Wiggins; Stephen Montgomery; Amy Huei-Yi Lee
  • Funder
  • NHMRC
PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.27915.4
Research Article metrics
Revised
Enhancement of pyocyanin production by subinhibitory concentration of royal jelly in Pseudomonas aeruginosa
[version 4; peer review: 3 approved, 1 approved with reservations]
Dina Auliya Amly, Puspita Hajardhini, Alma Linggar Jonarta, Heribertus Dedy Kusuma Yulianto, Heni Susilowati
Peer Reviewers Ariadna A. Djais; Theerthankar Das; Shizuo Kayama; Philip S. Bird
  • Funder
  • Ministry of Research, Technology and Higher Education, Republic of Indonesia
LATEST VERSION PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.29991.4
Research Article metrics
Revised
Molecular Detection of Sapovirus in Children Under Five Years with Acute Gastroenteritis in Mansoura, Egypt between January 2019 and February 2020
[version 4; peer review: 2 approved]
Maysaa El Sayed Zaki, Raghdaa Shrief, Rasha H. Hassan
Peer Reviewers Marta Diez Valcarce; Nicola A. Page
LATEST VERSION PUBLISHED 24 Nov 2021
https://doi.org/10.12688/f1000research.73335.1
Research Article metrics
Production and characteristics of sailfin catfish (Pterygoplichthys pardalis) protein hydrolysate
[version 1; peer review: 2 not approved]
Asep Awaludin Prihanto, Rahmi Nurdiani, Lina Widya Sari
Peer Reviewers Celia Garcia-Sifuentes; Nilesh Nirmal
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
PUBLISHED 27 Oct 2021
https://doi.org/10.12688/f1000research.54306.2
Research Article metrics
Revised
Toxin-like peptides in plasma, urine and faecal samples from COVID-19 patients
[version 2; peer review: 2 approved]
Carlo Brogna, Simone Cristoni, Mauro Petrillo, Maddalena Querci, Ornella Piazza, Guy Van den Eede
Peer Reviewers Paolo Grumati; Moshe Arditi
  • Funder
  • European Commission Joint Research Centre
LATEST VERSION PUBLISHED 14 Oct 2021
https://doi.org/10.12688/f1000research.46399.2
Research Article metrics
Revised
Polymorphisms of the genes ABCG2, SLC22A12 and XDH and their relation with hyperuricemia and hypercholesterolemia in Mexican young adults
[version 2; peer review: 2 approved]
Juan Manuel Vargas-Morales, Martha Guevara-Cruz, Celia Aradillas-García, Lilia G. Noriega, Armando Tovar, Jorge Alejandro Alegría-Torres
Peer Reviewers Ilham Akbar Rahman; Jing He
  • Funder
  • Universidad Autónoma de San Luis Potosí
LATEST VERSION PUBLISHED 24 Sep 2021
https://doi.org/10.12688/f1000research.53424.2
Case Report metrics
Revised
Case Report: Pseudomonas can take a toll on a patient
[version 2; peer review: 2 approved]
David K. Buchbinder, Jasjit Singh, Tuan Dao, Aaron Sassoon, Antonio Arrieta
Peer Reviewers David Hagin; Shanmuganathan Chandrakasan
LATEST VERSION PUBLISHED 21 Sep 2021
https://doi.org/10.12688/f1000research.53779.2
Research Article metrics
Revised
Isolation and characterization of a heavy metal- and antibiotic-tolerant novel bacterial strain from a contaminated culture plate of Chlamydomonas reinhardtii, a green micro-alga.
[version 2; peer review: 2 approved]
Mautusi Mitra, Kevin Manoap-Anh-Khoa Nguyen, Taylor Wayland Box, Taylor Lynne Berry, Megumi Fujita
Peer Reviewers David Dewez; Ruby A. Ynalvez
  • Funder
  • University of West Georgia Student Research Assistant Program (SRAP) grant and College of Sciences and Mathematics grants from 2018 - 2020
LATEST VERSION PUBLISHED 07 Sep 2021
https://doi.org/10.12688/f1000research.51873.2
Research Article metrics
Revised
A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes
[version 2; peer review: 2 approved]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Kaleb Abram and David Ussery; Christos Ouzounis
  • Funder
  • IARPA
LATEST VERSION PUBLISHED 02 Sep 2021
https://doi.org/10.12688/f1000research.25738.3
Research Article metrics
Revised
maxRatio improves the detection of samples with abnormal amplification profiles on QIAgen’s artus HIV-1 qPCR assay
[version 3; peer review: 2 approved]
Luigi Marongiu, Eric B. Shain, Marianna Martinelli, Matteo Pagliari, Heike Allgayer
Peer Reviewers Emiliano Panieri; Joel Tellinghuisen
  • Funders
  • German Cancer Research Center
  • Deutsche Forschungsgemeinschaft
  • Dr Hella-Buehler-Foundation
  • Ingrid zu Solms Foundation
  • Deutsche Krebshilfe
  • HIPO/POP-Initiative for Personalized Oncology
  • HEiKA Initiative
  • Alfried Krupp von Bohlen und Halbach-Stiftung
LATEST VERSION PUBLISHED 31 Aug 2021
https://doi.org/10.12688/f1000research.28146.2
Research Article metrics
Revised
Genome-wide regulation of CpG methylation by ecCEBPα in acute myeloid leukemia
[version 2; peer review: 2 approved]
Adewale J. Ogunleye, Ekaterina Romanova, Yulia A. Medvedeva
Peer Reviewers Amrita Singh; Oleg N. Demidov
  • Funders
  • Russian Science Foundation
  • Ministry of the Sciences and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 31 Aug 2021
https://doi.org/10.12688/f1000research.28142.2
Software Tool Article metrics
Revised
MIREyA: a computational approach to detect miRNA-directed gene activation
[version 2; peer review: 1 approved, 2 approved with reservations]
Anna Elizarova, Mumin Ozturk, Reto Guler, Yulia A. Medvedeva
Peer Reviewers Michiel Jan Laurens De Hoon; Xiangfu Zhong; Chaogang Shao
  • Funders
  • European and Developing Countries Clinical Trials Partnership
  • Russian Foundation for Basic Research
  • South Africa National Research Foundation
LATEST VERSION PUBLISHED 26 Aug 2021
https://doi.org/10.12688/f1000research.53235.3
Systematic Review metrics
Revised
The role of single nucleotide polymorphisms of IL-1A -889C>T (rs1800587), TNF-A -238G>A (rs361525), and VDR TaqI (rs731236) on susceptibility to herniated nucleus pulposus: a systematic review and meta-analysis
[version 3; peer review: 2 approved]
Azharuddin Azharuddin, Muhammad Ilmawan, Jonny Karunia Fajar, Marhami Fahriani, Sukamto S. Mamada, Helnida Anggun Maliga, Firzan Nainu, Kuldeep Dhama, Harapan Harapan, Rahadyan Magetsari
Peer Reviewers Ismail Hadisoebroto dilogo; Mahir Gachabayov
LATEST VERSION PUBLISHED 23 Aug 2021
https://doi.org/10.12688/f1000research.52412.2
Method Article metrics
Revised
A signaling pathway-driven bioinformatics pipeline for predicting therapeutics against emerging infectious diseases
[version 2; peer review: 2 approved, 1 approved with reservations]
Tiana M. Scott, Sam Jensen, Brett E. Pickett
Peer Reviewers José Pedro Cerón-Carrasco; Babatunde Joseph Oso; Soumya Lipsa Rath
  • Funder
  • Brigham Young University
LATEST VERSION PUBLISHED 20 Aug 2021
https://doi.org/10.12688/f1000research.53467.2
Method Article metrics
Revised
Whole genome sequencing of colonies derived from cannabis flowers and the impact of media selection on benchmarking total yeast and mold detection tools
[version 2; peer review: 2 approved]
Kevin McKernan, Yvonne Helbert, Liam Kane, Nathan Houde, Lei Zhang, Stephen McLaughlin
Peer Reviewers Cindy Orser; Zamir K. Punja
  • Funder
  • Medicinal Genomics
LATEST VERSION PUBLISHED 12 Aug 2021
81-100 of 636 ARTICLES
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