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https://doi.org/10.12688/f1000research.122312.1
Opinion Article metrics
Community-driven ELIXIR activities in single-cell omics
[version 1; peer review: 2 approved with reservations]
Paulo Czarnewski, Ahmed Mahfouz, Raffaele A. Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez-Uriarte, Charlotte Soneson, Tony Burdett, Barbara Szomolay, Pavankumar Videm, Hans-Rudolf Hotz, Irene Papatheodorou, John M. Hancock, Björn Grüning, Wilfried Haerty, Roland Krause, Salvador Capella-Gutierrez, Brane Leskošek, Luca Alessandri, Maddalena Arigoni, Tadeja Rezen, Alexander Botzki, Polonca Ferk, Jessica Lindvall, Katharina F. Heil, Naveed Ishaque, Eija Korpelainen
Peer Reviewers Xiao-Yang Zhao; Feng Zhu
  • Funders
  • ELIXIR
  • Knut och Alice Wallenbergs Stiftelse
PUBLISHED 29 Jul 2022
https://doi.org/10.12688/f1000research.53214.4
Research Article metrics
Revised
Discrimination of the SARS–CoV-2 strains using of coloured s-LASCA-imaging of GB-speckles, developed for the gene “S” nucleotide sequences
[version 4; peer review: 2 approved, 1 approved with reservations]
Onega Ulianova, Yury Saltykov, Sergey Ulyanov, Sergey Zaytsev, Alexander Ulyanov, Valentina Feodorova
Peer Reviewers Oleg Angelsky; Alexey Bashkatov and Claudia Zenkova; Dmitry A. Zimnyakov
  • Funder
  • Russian Foundation for Basic Research
LATEST VERSION PUBLISHED 22 Jun 2022
https://doi.org/10.12688/f1000research.53737.2
Research Article metrics
Revised
Silencing of Carboxypeptidase E expression inhibits proliferation and invasion of Panc-1 pancreatic cancer cells
[version 2; peer review: 2 approved]
Hong Lou, Y Peng Loh
Peer Reviewers Vinayak C. Palve; Lata Singh
  • Funder
  • Eunice Kennedy Shriver National Institute of Child Health and Human Development
LATEST VERSION PUBLISHED 28 Apr 2022
https://doi.org/10.12688/f1000research.111159.1
Review metrics
Molecular mediators involved in skin healing: a narrative review
[version 1; peer review: 1 approved with reservations]
Camila dos Santos Leite, Oscar César Pires, Pedro Henrique Avi, Maria Luiza M. Soto, Ariane Ribeiro Martins, Thalita Rocha
Peer Reviewers David Leavesley
PUBLISHED 27 Apr 2022
https://doi.org/10.12688/f1000research.110351.1
Brief Report metrics
High-quality genome assembly of a Pestalotiopsis fungus using DIY-friendly methods
[version 1; peer review: 3 approved with reservations]
Joshua L. McGinnis, Daniel J. Giguere
Peer Reviewers Paula Maria Moolhuijzen; Huzefa A Raja; Sinem Beyhan
  • Funder
  • Mitacs
PUBLISHED 20 Apr 2022
https://doi.org/10.12688/f1000research.76191.2
Research Article metrics
Revised
Sulfiredoxin-1 blood mRNA expression levels negatively correlate with hippocampal atrophy and cognitive decline
[version 2; peer review: 2 approved]
Catalina Anca Cucos, Ioana Cracana, Maria Dobre, Bogdan Ovidiu Popescu, Catalina Tudose, Luiza Spiru, Gina Manda, Gabriela Niculescu, Elena Milanesi
Peer Reviewers David Gurwitz; Sermin Genc
  • Funder
  • Competitiveness Operational Programme
LATEST VERSION PUBLISHED 21 Mar 2022
https://doi.org/10.12688/f1000research.75677.1
Research Article metrics
Design-of-experiments in vitro transcription yield optimization of self-amplifying RNA
[version 1; peer review: 2 approved with reservations]
Karnyart Samnuan, Anna K Blakney, Paul F McKay, Robin J Shattock
Peer Reviewers Rok Sekirnik; Emily Voigt and Devin Brandt
  • Funders
  • European Commission H2020
  • Engineering and Physical Sciences Research Council
PUBLISHED 18 Mar 2022
https://doi.org/10.12688/f1000research.39214.2
Opinion Article metrics
Revised
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing
[version 2; peer review: 1 approved, 2 approved with reservations]
Mauro Petrillo, Marco Fabbri, Dafni Maria Kagkli, Maddalena Querci, Guy Van den Eede, Erik Alm, Derya Aytan-Aktug, Salvador Capella-Gutierrez, Catherine Carrillo, Alessandro Cestaro, Kok-Gan Chan, Teresa Coque, Christoph Endrullat, Ivo Gut, Paul Hammer, Gemma L. Kay, Jean-Yves Madec, Alison E. Mather, Alice Carolyn McHardy, Thierry Naas, Valentina Paracchini, Silke Peter, Arthur Pightling, Barbara Raffael, John Rossen, Etienne Ruppé, Robert Schlaberg, Kevin Vanneste, Lukas M. Weber, Henrik Westh, Alexandre Angers-Loustau
Peer Reviewers Rene Hendriksen; Anna Abramova and Marcus Wenne; Enrico Lavezzo and Emilio Ispano
  • Funders
  • Biotechnology and Biological Sciences Research Counci
  • European Commission
LATEST VERSION PUBLISHED 16 Mar 2022
https://doi.org/10.12688/f1000research.94159.1
Software Tool Article metrics
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.27763.2
Brief Report metrics
Revised
Runcer-Necromancer: a method to rescue data from an interrupted run on MGISEQ-2000
[version 2; peer review: 1 approved, 1 approved with reservations]
Anna Pavlova, Vera Belova, Robert Afasizhev, Irina Bulusheva, Denis Rebrikov, Dmitriy Korostin
Peer Reviewers Simon Andrews; Sergey Knyazev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.28327.2
Review metrics
Revised
Novel antifungal agents in clinical trials
[version 2; peer review: 2 approved]
Samantha E. Jacobs, Panagiotis Zagaliotis, Thomas J. Walsh
Peer Reviewers Charalampos Antachopoulos; Shahram Mahmoudi
  • Funder
  • Henry Schueller Foundation
LATEST VERSION PUBLISHED 12 Jan 2022
https://doi.org/10.12688/f1000research.52159.2
Research Article metrics
Revised
Experimental-analytical approach to assessing mechanosensitive cartilage blood marker kinetics in healthy adults: dose-response relationship and interrelationship of nine candidate markers
[version 2; peer review: 2 approved]
Simon Herger, Werner Vach, Anna-Maria Liphardt, Corina Nüesch, Christian Egloff, Annegret Mündermann
Peer Reviewers Ali Mobasheri; Anne-Christine Bay-Jensen
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Department of Orthopaedics and Traumatology, University Hospital Basel
  • MEDA Pharma GmbH & Co.KG (A Mylan Company)
LATEST VERSION PUBLISHED 11 Jan 2022
https://doi.org/10.12688/f1000research.74836.1
Method Article metrics
Slinker: Visualising novel splicing events in RNA-Seq data
[version 1; peer review: 3 approved]
Breon Schmidt, Marek Cmero, Paul Ekert, Nadia Davidson, Alicia Oshlack
Peer Reviewers George Wiggins; Stephen Montgomery; Amy Huei-Yi Lee
  • Funder
  • NHMRC
PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.27915.4
Research Article metrics
Revised
Enhancement of pyocyanin production by subinhibitory concentration of royal jelly in Pseudomonas aeruginosa
[version 4; peer review: 3 approved, 1 approved with reservations]
Dina Auliya Amly, Puspita Hajardhini, Alma Linggar Jonarta, Heribertus Dedy Kusuma Yulianto, Heni Susilowati
Peer Reviewers Ariadna A. Djais; Theerthankar Das; Shizuo Kayama; Philip S. Bird
  • Funder
  • Ministry of Research, Technology and Higher Education, Republic of Indonesia
LATEST VERSION PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.29991.4
Research Article metrics
Revised
Molecular Detection of Sapovirus in Children Under Five Years with Acute Gastroenteritis in Mansoura, Egypt between January 2019 and February 2020
[version 4; peer review: 2 approved]
Maysaa El Sayed Zaki, Raghdaa Shrief, Rasha H. Hassan
Peer Reviewers Marta Diez Valcarce; Nicola A. Page
LATEST VERSION PUBLISHED 24 Nov 2021
https://doi.org/10.12688/f1000research.73335.1
Research Article metrics
Production and characteristics of sailfin catfish (Pterygoplichthys pardalis) protein hydrolysate
[version 1; peer review: 2 not approved]
Asep Awaludin Prihanto, Rahmi Nurdiani, Lina Widya Sari
Peer Reviewers Celia Garcia-Sifuentes; Nilesh Nirmal
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
PUBLISHED 27 Oct 2021
https://doi.org/10.12688/f1000research.54306.2
Research Article metrics
Revised
Toxin-like peptides in plasma, urine and faecal samples from COVID-19 patients
[version 2; peer review: 2 approved]
Carlo Brogna, Simone Cristoni, Mauro Petrillo, Maddalena Querci, Ornella Piazza, Guy Van den Eede
Peer Reviewers Paolo Grumati; Moshe Arditi
  • Funder
  • European Commission Joint Research Centre
LATEST VERSION PUBLISHED 14 Oct 2021
https://doi.org/10.12688/f1000research.46399.2
Research Article metrics
Revised
Polymorphisms of the genes ABCG2, SLC22A12 and XDH and their relation with hyperuricemia and hypercholesterolemia in Mexican young adults
[version 2; peer review: 2 approved]
Juan Manuel Vargas-Morales, Martha Guevara-Cruz, Celia Aradillas-García, Lilia G. Noriega, Armando Tovar, Jorge Alejandro Alegría-Torres
Peer Reviewers Ilham Akbar Rahman; Jing He
  • Funder
  • Universidad Autónoma de San Luis Potosí
LATEST VERSION PUBLISHED 24 Sep 2021
https://doi.org/10.12688/f1000research.53424.2
Case Report metrics
Revised
Case Report: Pseudomonas can take a toll on a patient
[version 2; peer review: 2 approved]
David K. Buchbinder, Jasjit Singh, Tuan Dao, Aaron Sassoon, Antonio Arrieta
Peer Reviewers David Hagin; Shanmuganathan Chandrakasan
LATEST VERSION PUBLISHED 21 Sep 2021
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