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https://doi.org/10.12688/f1000research.53779.2
Research Article metrics
Revised
Isolation and characterization of a heavy metal- and antibiotic-tolerant novel bacterial strain from a contaminated culture plate of Chlamydomonas reinhardtii, a green micro-alga.
[version 2; peer review: 2 approved]
Mautusi Mitra, Kevin Manoap-Anh-Khoa Nguyen, Taylor Wayland Box, Taylor Lynne Berry, Megumi Fujita
Peer Reviewers David Dewez; Ruby A. Ynalvez
  • Funder
  • University of West Georgia Student Research Assistant Program (SRAP) grant and College of Sciences and Mathematics grants from 2018 - 2020
LATEST VERSION PUBLISHED 07 Sep 2021
https://doi.org/10.12688/f1000research.51873.2
Research Article metrics
Revised
A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes
[version 2; peer review: 2 approved]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Kaleb Abram and David Ussery; Christos Ouzounis
  • Funder
  • IARPA
LATEST VERSION PUBLISHED 02 Sep 2021
https://doi.org/10.12688/f1000research.25738.3
Research Article metrics
Revised
maxRatio improves the detection of samples with abnormal amplification profiles on QIAgen’s artus HIV-1 qPCR assay
[version 3; peer review: 2 approved]
Luigi Marongiu, Eric B. Shain, Marianna Martinelli, Matteo Pagliari, Heike Allgayer
Peer Reviewers Emiliano Panieri; Joel Tellinghuisen
  • Funders
  • German Cancer Research Center
  • Deutsche Forschungsgemeinschaft
  • Dr Hella-Buehler-Foundation
  • Ingrid zu Solms Foundation
  • Deutsche Krebshilfe
  • HIPO/POP-Initiative for Personalized Oncology
  • HEiKA Initiative
  • Alfried Krupp von Bohlen und Halbach-Stiftung
LATEST VERSION PUBLISHED 31 Aug 2021
https://doi.org/10.12688/f1000research.28146.2
Research Article metrics
Revised
Genome-wide regulation of CpG methylation by ecCEBPα in acute myeloid leukemia
[version 2; peer review: 2 approved]
Adewale J. Ogunleye, Ekaterina Romanova, Yulia A. Medvedeva
Peer Reviewers Amrita Singh; Oleg N. Demidov
  • Funders
  • Russian Science Foundation
  • Ministry of the Sciences and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 31 Aug 2021
https://doi.org/10.12688/f1000research.28142.2
Software Tool Article metrics
Revised
MIREyA: a computational approach to detect miRNA-directed gene activation
[version 2; peer review: 1 approved, 2 approved with reservations]
Anna Elizarova, Mumin Ozturk, Reto Guler, Yulia A. Medvedeva
Peer Reviewers Michiel Jan Laurens De Hoon; Xiangfu Zhong; Chaogang Shao
  • Funders
  • European and Developing Countries Clinical Trials Partnership
  • Russian Foundation for Basic Research
  • South Africa National Research Foundation
LATEST VERSION PUBLISHED 26 Aug 2021
https://doi.org/10.12688/f1000research.53235.3
Systematic Review metrics
Revised
The role of single nucleotide polymorphisms of IL-1A -889C>T (rs1800587), TNF-A -238G>A (rs361525), and VDR TaqI (rs731236) on susceptibility to herniated nucleus pulposus: a systematic review and meta-analysis
[version 3; peer review: 2 approved]
Azharuddin Azharuddin, Muhammad Ilmawan, Jonny Karunia Fajar, Marhami Fahriani, Sukamto S. Mamada, Helnida Anggun Maliga, Firzan Nainu, Kuldeep Dhama, Harapan Harapan, Rahadyan Magetsari
Peer Reviewers Ismail Hadisoebroto dilogo; Mahir Gachabayov
LATEST VERSION PUBLISHED 23 Aug 2021
https://doi.org/10.12688/f1000research.52412.2
Method Article metrics
Revised
A signaling pathway-driven bioinformatics pipeline for predicting therapeutics against emerging infectious diseases
[version 2; peer review: 2 approved, 1 approved with reservations]
Tiana M. Scott, Sam Jensen, Brett E. Pickett
Peer Reviewers José Pedro Cerón-Carrasco; Babatunde Joseph Oso; Soumya Lipsa Rath
  • Funder
  • Brigham Young University
LATEST VERSION PUBLISHED 20 Aug 2021
https://doi.org/10.12688/f1000research.53467.2
Method Article metrics
Revised
Whole genome sequencing of colonies derived from cannabis flowers and the impact of media selection on benchmarking total yeast and mold detection tools
[version 2; peer review: 2 approved]
Kevin McKernan, Yvonne Helbert, Liam Kane, Nathan Houde, Lei Zhang, Stephen McLaughlin
Peer Reviewers Cindy Orser; Zamir K. Punja
  • Funder
  • Medicinal Genomics
LATEST VERSION PUBLISHED 12 Aug 2021
https://doi.org/10.12688/f1000research.53484.1
Research Article metrics AWAITING PEER REVIEW
Differential CTCF binding in motor neurons and lymphocytes
[version 1; peer review: awaiting peer review]
Belkis Atasever Arslan, Scott T. Brady, Gamze Gunal Sadik
Peer Reviewers Invited
PUBLISHED 30 Jul 2021
https://doi.org/10.12688/f1000research.52266.3
Research Article metrics
Revised
The Discrepancy between Clove and Non-Clove Cigarette Smoke-Promoted Candida albicans Biofilm Formation with Precoating RNA-aptamer
[version 3; peer review: 2 approved]
Boy Muchlis Bachtiar, Basri A. Gani, Astri Deviana, Nastiti Rilo Utami, Anissa Dien Andriyani, Endang Winiati Bachtiar
Peer Reviewers Samira Shirooie; Zamirah Zainal-Abidin
  • Funder
  • The Grant from Universitas Indonesia (PUTI Q1 2020)
LATEST VERSION PUBLISHED 29 Jul 2021
https://doi.org/10.12688/f1000research.28216.4
Research Article metrics
Revised
A pilot study of red complex and three genera subgingival microbiome in periodontitis subjects with and without diabetes, evaluated by MinION platform
[version 4; peer review: 2 approved]
Boy M. Bachtiar, Citra F. Theodorea, Dicky L. Tahapary, Cindy Astrella, Natalina -, Endang W. Bachtiar
Peer Reviewers Wan Izlina Binti Wan Ibrahim; Heni Susilowati
  • Funder
  • Ministry of Research and Technology/BRIN
LATEST VERSION PUBLISHED 12 Jul 2021
https://doi.org/10.12688/f1000research.53683.1
Research Article metrics
Killer immunoglobulin-like receptor (KIR) genes are associated with the risk of episodes of high-level and detectable viremia among HIV controllers
[version 1; peer review: 2 not approved]
Nathalia Beatriz Ramos De Sá, Karina dos S. Silva, Marcelo Ribeiro-Alves, Diogo Gama Caetano, Fernanda Heloise Côrtes, Suwellen S. D. de Azevedo, Brenda Hoagland, Beatriz Grinsztejn, Valdilea G. Veloso, Mariza G. Morgado, Sylvia Lopes Maia Teixeira
Peer Reviewers Roberto Biassoni and Mauro Malnati; Nicole F. Bernard
  • Funders
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico – CNPq
  • Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro – FAPERJ
  • FIOCRUZ
PUBLISHED 07 Jul 2021
https://doi.org/10.12688/f1000research.52540.3
Research Article metrics
Revised
Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology
[version 3; peer review: 2 approved]
Mauro Petrillo, Carlo Brogna, Simone Cristoni, Maddalena Querci, Ornella Piazza, Guy Van den Eede
Peer Reviewers Kourosh Honarmand Ebrahimi; Margarita Aguilera
  • Funder
  • Joint Research Centre
LATEST VERSION PUBLISHED 01 Jul 2021
https://doi.org/10.12688/f1000research.28052.2
Case Report metrics
Revised
Case Report: Mosaicism of a novel nonsense variant in the neurofibromin gene underlies a mosaic generalized NF1 phenotype
[version 2; peer review: 2 approved]
Hui Li Kwong, Yong-Kwang Tay, Ene-Choo Tan
Peer Reviewers Richard J. Antaya; Joshua Tay
  • Funder
  • National Medical Research Council, Ministry of Health, Singapore
LATEST VERSION PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.52878.1
Software Tool Article metrics
CHIPS: A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
[version 1; peer review: 2 approved with reservations, 2 not approved]
Len Taing, Gali Bai, Clara Cousins, Paloma Cejas, Xintao Qiu, Zachary T. Herbert, Myles Brown, Clifford A. Meyer, X. Shirley Liu, Henry W. Long, Ming Tang
Peer Reviewers Anqi Zhu; Yaqiang Cao; Robin H van der Weide; Chenxu Zhu
  • Funder
  • National Institute of Health
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.53170.1
Research Article metrics
The combination of ADSCs and 10% PRP increases Rb protein expression on senescent human dermal fibroblasts
[version 1; peer review: 1 approved, 1 not approved]
Sinta Murlistyarini, Lulus Putri Aninda, Ufida Aini Afridafaz, Sri Widyarti, Agustina Tri Endharti, Teguh Wahju Sardjono
Peer Reviewers PRASETYADI MAWARDI and Loeki Enggar Fitri; Troy Harkness and Mathew Lubachowski
  • Funder
  • The Institute of Research and Community Services, Universitas Brawijaya
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.27214.2
Software Tool Article metrics
Revised
iCAT: diagnostic assessment tool of immunological history using high-throughput T-cell receptor sequencing
[version 2; peer review: 2 approved]
Ahmad Rajeh, Kyle Wolf, Courtney Schiebout, Nabeel Sait, Tim Kosfeld, Richard J. DiPaolo, Tae-Hyuk Ahn
Peer Reviewers Shuo-Wang Qiao and Ying Yao; Se-Ran Jun
  • Funder
  • Federal Bureau of Investigations
LATEST VERSION PUBLISHED 29 Jun 2021
https://doi.org/10.12688/f1000research.53364.1
Research Article metrics
Comparison of two multiplexed technologies for profiling >1,000 serum proteins that may associate with tumor burden
[version 1; peer review: 2 approved, 1 approved with reservations]
Annie Ren, Ioannis Prassas, Vijithan Sugumar, Antoninus Soosaipillai, Marcus Bernardini, Eleftherios P Diamandis, Vathany Kulasingam
Peer Reviewers Nivedita Chowdhury; Anna E Lokshin; Stefan Holdenrieder
  • Funder
  • Mount Sinai Hospital
PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.52624.2
Research Article metrics
Revised
Association of subgingival Epstein–Barr virus and periodontitis
[version 2; peer review: 2 approved]
Chaerita Maulani, Sri Lelyati C. Masulili, Widayat Djoko Santoso, Nurtami Soedarsono, Lindawati Kusdhany, Elza Ibrahim Auerkari
Peer Reviewers Muhammad Sohail Zafar; Shahida Mohd-Said
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.40667.2
Research Article metrics
Revised
Zuotai (β-HgS)-containing 70 Wei Zhen-Zhu-Wan differs from mercury chloride and methylmercury on hepatic cytochrome P450 in mice
[version 2; peer review: 2 approved]
Yu Nie, Shang-Fu Xu, Yan-Liu Lu, Xiu-Rong Zhao, Cen Li, Li-Xin Wei, Jie Liu
Peer Reviewers Xingguo Cheng; Xian-Ju Huang
  • Funders
  • Chinese Academy of Sciences
  • National Natural Science Foundation of China
LATEST VERSION PUBLISHED 24 Jun 2021
101-120 of 644 ARTICLES
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