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https://doi.org/10.12688/f1000research.53484.1
Research Article metrics AWAITING PEER REVIEW
Differential CTCF binding in motor neurons and lymphocytes
[version 1; peer review: awaiting peer review]
Belkis Atasever Arslan, Scott T. Brady, Gamze Gunal Sadik
Peer Reviewers Invited
PUBLISHED 30 Jul 2021
https://doi.org/10.12688/f1000research.52266.3
Research Article metrics
Revised
The Discrepancy between Clove and Non-Clove Cigarette Smoke-Promoted Candida albicans Biofilm Formation with Precoating RNA-aptamer
[version 3; peer review: 2 approved]
Boy Muchlis Bachtiar, Basri A. Gani, Astri Deviana, Nastiti Rilo Utami, Anissa Dien Andriyani, Endang Winiati Bachtiar
Peer Reviewers Samira Shirooie; Zamirah Zainal-Abidin
  • Funder
  • The Grant from Universitas Indonesia (PUTI Q1 2020)
LATEST VERSION PUBLISHED 29 Jul 2021
https://doi.org/10.12688/f1000research.28216.4
Research Article metrics
Revised
A pilot study of red complex and three genera subgingival microbiome in periodontitis subjects with and without diabetes, evaluated by MinION platform
[version 4; peer review: 2 approved]
Boy M. Bachtiar, Citra F. Theodorea, Dicky L. Tahapary, Cindy Astrella, Natalina -, Endang W. Bachtiar
Peer Reviewers Wan Izlina Binti Wan Ibrahim; Heni Susilowati
  • Funder
  • Ministry of Research and Technology/BRIN
LATEST VERSION PUBLISHED 12 Jul 2021
https://doi.org/10.12688/f1000research.53683.1
Research Article metrics
Killer immunoglobulin-like receptor (KIR) genes are associated with the risk of episodes of high-level and detectable viremia among HIV controllers
[version 1; peer review: 2 not approved]
Nathalia Beatriz Ramos De Sá, Karina dos S. Silva, Marcelo Ribeiro-Alves, Diogo Gama Caetano, Fernanda Heloise Côrtes, Suwellen S. D. de Azevedo, Brenda Hoagland, Beatriz Grinsztejn, Valdilea G. Veloso, Mariza G. Morgado, Sylvia Lopes Maia Teixeira
Peer Reviewers Roberto Biassoni and Mauro Malnati; Nicole F. Bernard
  • Funders
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico – CNPq
  • Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro – FAPERJ
  • FIOCRUZ
PUBLISHED 07 Jul 2021
https://doi.org/10.12688/f1000research.52540.3
Research Article metrics
Revised
Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology
[version 3; peer review: 2 approved]
Mauro Petrillo, Carlo Brogna, Simone Cristoni, Maddalena Querci, Ornella Piazza, Guy Van den Eede
Peer Reviewers Kourosh Honarmand Ebrahimi; Margarita Aguilera
  • Funder
  • Joint Research Centre
LATEST VERSION PUBLISHED 01 Jul 2021
https://doi.org/10.12688/f1000research.28052.2
Case Report metrics
Revised
Case Report: Mosaicism of a novel nonsense variant in the neurofibromin gene underlies a mosaic generalized NF1 phenotype
[version 2; peer review: 2 approved]
Hui Li Kwong, Yong-Kwang Tay, Ene-Choo Tan
Peer Reviewers Richard J. Antaya; Joshua Tay
  • Funder
  • National Medical Research Council, Ministry of Health, Singapore
LATEST VERSION PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.52878.1
Software Tool Article metrics
CHIPS: A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
[version 1; peer review: 2 approved with reservations, 2 not approved]
Len Taing, Gali Bai, Clara Cousins, Paloma Cejas, Xintao Qiu, Zachary T. Herbert, Myles Brown, Clifford A. Meyer, X. Shirley Liu, Henry W. Long, Ming Tang
Peer Reviewers Anqi Zhu; Yaqiang Cao; Robin H van der Weide; Chenxu Zhu
  • Funder
  • National Institute of Health
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.53170.1
Research Article metrics
The combination of ADSCs and 10% PRP increases Rb protein expression on senescent human dermal fibroblasts
[version 1; peer review: 1 approved, 1 not approved]
Sinta Murlistyarini, Lulus Putri Aninda, Ufida Aini Afridafaz, Sri Widyarti, Agustina Tri Endharti, Teguh Wahju Sardjono
Peer Reviewers PRASETYADI MAWARDI and Loeki Enggar Fitri; Troy Harkness and Mathew Lubachowski
  • Funder
  • The Institute of Research and Community Services, Universitas Brawijaya
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.27214.2
Software Tool Article metrics
Revised
iCAT: diagnostic assessment tool of immunological history using high-throughput T-cell receptor sequencing
[version 2; peer review: 2 approved]
Ahmad Rajeh, Kyle Wolf, Courtney Schiebout, Nabeel Sait, Tim Kosfeld, Richard J. DiPaolo, Tae-Hyuk Ahn
Peer Reviewers Shuo-Wang Qiao and Ying Yao; Se-Ran Jun
  • Funder
  • Federal Bureau of Investigations
LATEST VERSION PUBLISHED 29 Jun 2021
https://doi.org/10.12688/f1000research.53364.1
Research Article metrics
Comparison of two multiplexed technologies for profiling >1,000 serum proteins that may associate with tumor burden
[version 1; peer review: 2 approved, 1 approved with reservations]
Annie Ren, Ioannis Prassas, Vijithan Sugumar, Antoninus Soosaipillai, Marcus Bernardini, Eleftherios P Diamandis, Vathany Kulasingam
Peer Reviewers Nivedita Chowdhury; Anna E Lokshin; Stefan Holdenrieder
  • Funder
  • Mount Sinai Hospital
PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.52624.2
Research Article metrics
Revised
Association of subgingival Epstein–Barr virus and periodontitis
[version 2; peer review: 2 approved]
Chaerita Maulani, Sri Lelyati C. Masulili, Widayat Djoko Santoso, Nurtami Soedarsono, Lindawati Kusdhany, Elza Ibrahim Auerkari
Peer Reviewers Muhammad Sohail Zafar; Shahida Mohd-Said
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.40667.2
Research Article metrics
Revised
Zuotai (β-HgS)-containing 70 Wei Zhen-Zhu-Wan differs from mercury chloride and methylmercury on hepatic cytochrome P450 in mice
[version 2; peer review: 2 approved]
Yu Nie, Shang-Fu Xu, Yan-Liu Lu, Xiu-Rong Zhao, Cen Li, Li-Xin Wei, Jie Liu
Peer Reviewers Xingguo Cheng; Xian-Ju Huang
  • Funders
  • Chinese Academy of Sciences
  • National Natural Science Foundation of China
LATEST VERSION PUBLISHED 24 Jun 2021
https://doi.org/10.12688/f1000research.24345.2
Software Tool Article metrics
Update
Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz
[version 2; peer review: 3 approved]
Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Peer Reviewers Ekaterina Smirnova; Edoardo Pasolli; Levi Waldron
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 21 Jun 2021
https://doi.org/10.12688/f1000research.53137.1
Research Article metrics
Characterization of SARS-CoV-2 East Java isolate, Indonesia
[version 1; peer review: 2 approved, 1 approved with reservations]
Fedik Abdul Rantam, Cita Rosita Sigit Prakoeswa, Damayanti Tinduh, Jusak Nugraha, Helen Susilowati, Andi Yasmin Wijaya, Ni Nyoman Tri Puspaningsih, Dwiyanti Puspitasari, Dominicus Husada, Neneng Dewi Kurniati, Aryati Aryati
Peer Reviewers Aulanni’am Aulanni'am; Lidia Audrey Rocha Valadas; Marina Derkho
  • Funder
  • Ministry of Research and Technology; Ministry of Health of the Republic of Indonesia
PUBLISHED 16 Jun 2021
https://doi.org/10.12688/f1000research.51613.2
Data Note metrics
Revised
A draft reference assembly of the Psilocybe cubensis genome
[version 2; peer review: 2 approved]
Kevin McKernan, Liam T. Kane, Seth Crawford, Chen-Shan Chin, Aaron Trippe, Stephen McLaughlin
Peer Reviewers Jason C. Slot; Anders Goncalves da Silva and Philippe Henry
LATEST VERSION PUBLISHED 15 Jun 2021
https://doi.org/10.12688/f1000research.27921.1
Research Article metrics
Decaffeinated light-roasted green coffee and green tea extract combination improved metabolic parameters and modulated inflammatory genes in metabolic syndrome rats
[version 1; peer review: 2 approved with reservations]
Mohammad Saifur Rohman, Mifetika Lukitasari, Dwi Adi Nugroho, Risa Ramadhiani, Nashi Widodo, Inggita Kusumastuty, Nur Ida Panca Nugrahini
Peer Reviewers Alex Boye; Nelly Mayulu
  • Funder
  • Universitas Brawijaya
PUBLISHED 14 Jun 2021
https://doi.org/10.12688/f1000research.23471.2
Research Article metrics
Revised
Metformin improves FOXP3 mRNA expression through suppression of interferon gamma levels in pristane-induced murine models of lupus
[version 2; peer review: 3 approved]
Stevent Sumantri, Mochammad Hatta, Rosdiana Natzir, Haerani Rasyid, Iris Rengganis, Muh. Nasrum Massi, Andi Asadul Islam, Gatot Lawrence, Ilhamjaya Patellongi, Andi Fachruddin Benyamin
Peer Reviewers Shuang Ye; Erin B Taylor; Mirza Zaka Pratama
LATEST VERSION PUBLISHED 11 Jun 2021
https://doi.org/10.12688/f1000research.28510.2
Research Article metrics
Revised
Pan-cancer chromatin analysis of the human vtRNA genes uncovers their association with cancer biology
[version 2; peer review: 2 approved, 1 approved with reservations]
Rafael Sebastián Fort, María Ana Duhagon
Peer Reviewers Daniele Hasler; Deepanwita Sengupta; Yong Sun Lee
  • Funders
  • Agencia Nacional de Investigación e Innovación (ANII)
  • Comision Academica de Posgrado, UDELAR
  • Comisión Sectorial de Investigación Científica (CSIC, UDELAR)
  • Programa para el Desarrollo de las Ciencias Basicas (PEDECIBA, MEC)
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.28022.2
Software Tool Article metrics
Revised
BioPAN: a web-based tool to explore mammalian lipidome metabolic pathways on LIPID MAPS
[version 2; peer review: 3 approved]
Caroline Gaud, Bebiana C. Sousa, An Nguyen, Maria Fedorova, Zhixu Ni, Valerie B. O’Donnell, Michael J.O. Wakelam, Simon Andrews, Andrea F. Lopez-Clavijo
Peer Reviewers Amaury Cazenave Gassiot; Phillip Whitfield; Ginger Milne
  • Funders
  • German Federal Ministry of Education and Research
  • Wellcome Trust
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.25369.1
Opinion Article metrics
Moving forward with forward genetics: A summary of the INFRAFRONTIER Forward Genetics Panel Discussion
[version 1; peer review: 1 approved, 2 approved with reservations]
Asrar Ali Khan, Michael Raess, Martin Hrabe de Angelis
Peer Reviewers Martin S Denzel; Anton Wutz and Corinne Kaufmann; Camron D Bryant
  • Funder
  • Horizon 2020
PUBLISHED 08 Jun 2021
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