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https://doi.org/10.12688/f1000research.27188.1
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isa4j: a scalable Java library for creating ISA-Tab metadata
[version 1; peer review: 2 approved]
Dennis Psaroudakis, Feng Liu, Patrick König, Uwe Scholz, Astrid Junker, Matthias Lange, Daniel Arend
Peer Reviewers Massimiliano Izzo; Nils Hoffmann
  • Funders
  • ELIXIR
  • German Ministry of Education and Research (BMBF)
PUBLISHED 03 Dec 2020
https://doi.org/10.12688/f1000research.25413.2
Research Article metrics
Revised
Biocuration - mapping resources and needs
[version 2; peer review: 2 approved]
Alexandra Holinski, Melissa L. Burke, Sarah L. Morgan, Peter McQuilton, Patricia M. Palagi
Peer Reviewers Tanya Berardini; Luana Licata
  • Funder
  • ELIXIR
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.24353.2
Case Report metrics
Revised
Case Report: Simultaneously diagnosed gastric adenocarcinoma and pernicious anemia – a classic association
[version 2; peer review: 2 approved, 1 approved with reservations]
Syed Kamran, Mattias K. Dilling, Nathaniel A. Parker, Joel Alderson, Nathan D. Tofteland, Quoc V. Truong
Peer Reviewers Faustina N A. Sackey, Ph.D., FMWI; Talha Badar; Martyn Hooper MBE
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.26901.3
Research Article metrics
Revised
Activation of the Keap1-Nrf2 pathway by specioside and the n-butanol extract from the inner bark of Tabebuia rosea (Bertol) DC
[version 3; peer review: 2 approved]
Sandra Catalina Garzón-Castaño, Francisco Javier Jiménez-González, Luz Angela Veloza, Juan Carlos Sepúlveda-Arias
Peer Reviewers Jaime Martin‐Franco; Luca Rastrelli
  • Funders
  • Fundación Universitaria Autónoma de las Américas
  • Universidad Tecnológica de Pereira
  • Sistema General de Regalías de Colombia
  • Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.25009.2
Research Article metrics
Revised
Immunohistochemical analysis of stem cells from human exfoliated deciduous teeth seeded in carbonate apatite scaffold for the alveolar bone defect in Wistar rats (Rattus novergicus)
[version 2; peer review: 2 approved]
Tania Saskianti, Alexander Patera Nugraha, Chiquita Prahasanti, Diah Savitri Ernawati, Ketut Suardita, Wibi Riawan
Peer Reviewers Niswati Fatmah Rosyida; Lidia Audrey Rocha Valadas
  • Funder
  • Universitas Airlangga
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.27179.1
Software Tool Article metrics
Semi-automated analysis of dot blots using ImageJ/Fiji
[version 1; peer review: 2 approved with reservations]
Anna H. Klemm
Peer Reviewers Christopher Schmied; Bram van den Broek
  • Funders
  • Ludwig Maximilian University of Munich
  • SciLifeLab
PUBLISHED 01 Dec 2020
https://doi.org/10.12688/f1000research.24435.2
Software Tool Article metrics
Revised
iMutSig: a web application to identify the most similar mutational signature using shiny
[version 2; peer review: 2 approved]
Zhi Yang, Priyatama Pandey, Paul Marjoram, Kimberly D. Siegmund
Peer Reviewers Adrian Baez-Ortega; Vittorio Perduca
  • Funders
  • National Institute of Environmental Health Sciences
  • National Cancer Institute
LATEST VERSION PUBLISHED 19 Nov 2020
https://doi.org/10.12688/f1000research.26488.1
Case Report metrics
Case Report: Prostatitis tuberculosis mimicking prostate cancer
[version 1; peer review: 2 approved with reservations]
Syah Mirsya Warli, Dhirajaya Dharma Kadar, Muhammad Haritsyah Warli
Peer Reviewers Dahril Dahril; Zhuo Tony Su
PUBLISHED 18 Nov 2020
https://doi.org/10.12688/f1000research.26524.1
Data Note metrics
Complete mitochondrial genome of the endangered species Brycon nattereri (Characiformes, Characidae)
[version 1; peer review: 2 approved with reservations]
Snaydia Viegas Resende, Rubens Pasa, Fabiano Bezerra Menegídio, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
Peer Reviewers Yong Zhang; Dora Davies and Juan José Lauthier
PUBLISHED 18 Nov 2020
https://doi.org/10.12688/f1000research.24956.2
Software Tool Article metrics
Revised
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler
[version 2; peer review: 2 approved]
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Peer Reviewers Egon L. Willighagen; Ewy Mathe
  • Funders
  • Eesti Teadusagentuur
  • Seventh Framework Programme
  • European Regional Development Fund
LATEST VERSION PUBLISHED 17 Nov 2020
https://doi.org/10.12688/f1000research.23214.2
Software Tool Article metrics
Revised
CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets
[version 2; peer review: 2 approved, 1 not approved]
Sandeep Kasaragod, Varshasnata Mohanty, Ankur Tyagi, Santosh Kumar Behera, Arun H. Patil, Sneha M. Pinto, T. S. Keshava Prasad, Prashant Kumar Modi, Harsha Gowda
Peer Reviewers Suresh Mathivanan; Richard Kumaran Kandasamy; Jorge Duitama and Daniel Mahecha
  • Funders
  • Indian Council of Medical Research
  • Department of Science and Technology, Ministry of Science and Technology, India
  • Department of Biotechnology, Ministry of Science and Technology, India
LATEST VERSION PUBLISHED 16 Nov 2020
https://doi.org/10.12688/f1000research.15666.3
Research Article metrics
Revised
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
[version 3; peer review: 2 approved]
Angelo Duò, Mark D. Robinson, Charlotte Soneson
Peer Reviewers Jean Fan; Saskia Freytag
  • Funders
  • Swiss National Science Foundation
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 16 Nov 2020
https://doi.org/10.12688/f1000research.24621.2
Case Report metrics
Revised
Case Report: Renal potassium wasting in SARS-CoV-2 infection
[version 2; peer review: 2 approved]
Holly Mabillard, Hilary Tedd, Ally Speight, Christopher Duncan, David A. Price, John A. Sayer
Peer Reviewers Shabbir Moochhala; Ming-Hsien Tsai
  • Funders
  • Kidney Research UK
  • Northern Counties Kidney Research Fund
LATEST VERSION PUBLISHED 13 Nov 2020
https://doi.org/10.12688/f1000research.24654.2
Research Article metrics
Revised
Investigating a novel multiplex proteomics technology for detection of changes in serum protein concentrations that may correlate to tumor burden
[version 2; peer review: 2 approved]
Annie He Ren, Ioannis Prassas, Antoninus Soosaipillai, Stephanie Jarvi, Steven Gallinger, Vathany Kulasingam, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Anna E Lokshin
  • Funder
  • Mount Sinai Hospital
LATEST VERSION PUBLISHED 13 Nov 2020
https://doi.org/10.12688/f1000research.25560.1
Data Note metrics
The complete genome sequences of 22 parrot species (Psittaciformes, Aves)
[version 1; peer review: 3 approved with reservations]
Taylor Hains, Kathleen O'Neill, Jafet Velez, Nancy Speed, Susan Clubb, Taras Oleksyk, Stacy Pirro
Peer Reviewers Paweł Mackiewicz; Devon DeRaad and John McCormack; Roberto Ambrosini and Simona Secomandi
  • Funder
  • Iridian Genomes Inc
PUBLISHED 12 Nov 2020
https://doi.org/10.12688/f1000research.26438.2
Case Report metrics
Revised
Case Report: Complete heart block as a manifestation of cardiac metastasis of oral cancer
[version 2; peer review: 2 approved]
Andrianto Andrianto, Eka Prasetya Budi Mulia, Denny Suwanto, Dita Aulia Rachmi, Mohammad Yogiarto
Peer Reviewers Radityo Prakoso; Pieter A.F.M. Doevendans
LATEST VERSION PUBLISHED 11 Nov 2020
https://doi.org/10.12688/f1000research.22541.1
Research Article metrics
Use of 16s rRNA to identify non-lactose-fermenting bacilli and molecular detection of ESBL resistance genes associated with hospital-acquired infection in Soba University Hospital, Sudan
[version 1; peer review: 1 approved]
Wissam Ahmed Al Hag, Hana Elbadawi, Muzamil Mahdi Abdel Hamid
Peer Reviewers Asim Elnour
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.26930.1
Research Article metrics
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
[version 1; peer review: 3 approved]
Alexis Criscuolo
Peer Reviewers Brian Ondov; Burkhard Morgenstern; Guy Perrière
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.18134.3
Brief Report metrics RETRACTED
Revised
RETRACTED:  Non-intertwined strands of plasmid DNA contradict the Watson and Crick model of DNA structure
[version 3; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Pawan Kumar
LATEST VERSION PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.25626.1
Brief Report metrics
Unusual occurrence of rare Geastrum species with an abnormal stoma development found in Madurai, Tamil Nadu, India
[version 1; peer review: 1 approved with reservations, 1 not approved]
Veluswamy Karthikeyan
Peer Reviewers Julieth Sousa; Shwet Kamal and Babita Kumari
PUBLISHED 05 Nov 2020
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