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https://doi.org/10.12688/f1000research.52192.1
Editorial metrics NOT PEER REVIEWED
Expanding the Chemical Information Science gateway
[version 1; peer review: not peer reviewed]
José L. Medina-Franco
PUBLISHED 16 Apr 2021
https://doi.org/10.12688/f1000research.27062.2
Software Tool Article metrics
Revised
SAPHIR: a Shiny application to analyze tissue section images
[version 2; peer review: 2 approved]
Elodie Germani, Hugues Lelouard, Mathieu Fallet
Peer Reviewers Mahmoud Ahmed; Seth Winfree
  • Funders
  • Agence Nationale de la Recherche
  • Aix-Marseille University
  • Fondation pour la Recherche Médicale
  • Centre National de la Recherche Scientifique and Institut National de la Santé et de la Recherche Médicale
LATEST VERSION PUBLISHED 08 Apr 2021
https://doi.org/10.12688/f1000research.51794.1
Research Article metrics
Summary of two questionnaires designed to understand the research climate for Bioimage Analysts in the UK between 2016-2019
[version 1; peer review: 1 approved, 2 approved with reservations]
Dominic Waithe
Peer Reviewers Julien Colombelli; Julia Fernandez-Rodriguez; Martin L. Jones
  • Funder
  • UKRI MRC
PUBLISHED 06 Apr 2021
https://doi.org/10.12688/f1000research.28449.1
Opinion Article metrics
Recommendations for the FAIRification of genomic track metadata
[version 1; peer review: 2 approved]
Sveinung Gundersen, Sanjay Boddu, Salvador Capella-Gutierrez, Finn Drabløs, José M. Fernández, Radmila Kompova, Kieron Taylor, Dmytro Titov, Daniel Zerbino, Eivind Hovig
Peer Reviewers Max Haeussler; Granger Sutton
  • Funders
  • ELIXIR
  • ELIXIR Norway
  • ELIXIR Spain
  • INB
  • EMBL-EBI
PUBLISHED 01 Apr 2021
https://doi.org/10.12688/f1000research.28404.1
Research Article metrics RETRACTED
RETRACTED:  A low-cost in-house HIV integrase strand transfer inhibitor drug resistance test for resource-limited settings
[version 1; peer review: awaiting peer review]
Vera M. Onwong'a, Rachael W. Gachogo, Moses M. Masika, Graeme B. Jacobs, Frank G. Onyambu
  • Funder
  • Interhealth Networks Africa
PUBLISHED 31 Mar 2021
https://doi.org/10.12688/f1000research.27089.2
Research Article metrics
Revised
In silico analysis of cross reactivity among phospholipases from Hymenoptera species
[version 2; peer review: 2 approved]
Yuliana Emiliani, Andrés Sánchez, Marlon Munera, Jorge Sánchez, Dilia Aparicio
Peer Reviewers Anna Pomés; Jose F. Cantillo
LATEST VERSION PUBLISHED 29 Mar 2021
https://doi.org/10.12688/f1000research.27676.2
Research Article metrics
Revised
In silico prediction of structure and function for a large family of transmembrane proteins that includes human Tmem41b
[version 2; peer review: 2 approved, 1 approved with reservations]
Shahram Mesdaghi, David L. Murphy, Filomeno Sánchez Rodríguez, J. Javier Burgos-Mármol, Daniel J. Rigden
Peer Reviewers Pradip Panta and William T. Doerrler; Laszlo Dobson and Gábor Tusnády; Claudio Bassot
LATEST VERSION PUBLISHED 25 Mar 2021
https://doi.org/10.12688/f1000research.25447.2
Software Tool Article metrics
Revised
DEVILS: a tool for the visualization of large datasets with a high dynamic range
[version 2; peer review: 2 approved]
Romain Guiet, Olivier Burri, Nicolas Chiaruttini, Olivier Hagens, Arne Seitz
Peer Reviewers Sebastien Tosi; Mehedi Masud
  • Funder
  • Norges Forskningsråd
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.26771.2
Software Tool Article metrics
Revised
HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas
[version 2; peer review: 3 approved]
Tim O. Nieuwenhuis, Marc K. Halushka
Peer Reviewers Mazdak Salavati; Laurent Gatto; Yasin Kaymaz
  • Funders
  • National Heart, Lung, and Blood Institute
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.51916.1
Software Tool Article metrics
CytoBrowser: a browser-based collaborative annotation platform for whole slide images
[version 1; peer review: 1 approved with reservations, 1 not approved]
Christopher Rydell, Joakim Lindblad
Peer Reviewers Simon Nørrelykke; Peter Bankhead
  • Funder
  • Sweden’s Innovation Agency, VINNOVA
PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.27309.1
Data Note metrics
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.28133.1
Research Article metrics
Development of a physiologically based pharmacokinetic (PBPK) model of psilocybin and psilocin from magic mushroom in rats and humans
[version 1; peer review: 1 approved with reservations, 1 not approved]
Prinya Musikaphongsakul, Kimheang Ya, Pakpoom Subsoontorn, Manupat Lohitnavy
Peer Reviewers Michael Dzierlenga; Quoc Ba Tran
  • Funder
  • Naresuan University
PUBLISHED 15 Mar 2021
https://doi.org/10.12688/f1000research.51479.1
Brief Report metrics
Most Japanese individuals are genetically predisposed to recognize an immunogenic protein fragment shared between COVID-19 and common cold coronaviruses
[version 1; peer review: 2 approved, 1 approved with reservations]
Johannes M. Dijkstra, Aaron P. Frenette, Brian Dixon
Peer Reviewers Brian M. Baker; Andrea J. Sant; Anna Gil
PUBLISHED 10 Mar 2021
https://doi.org/10.12688/f1000research.27384.1
Software Tool Article metrics
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features
[version 1; peer review: 1 approved with reservations, 1 not approved]
Derek Reiman, Ahmed Metwally, Jun Sun, Yang Dai
Peer Reviewers Braden T Tierney; Boyang JI
PUBLISHED 09 Mar 2021
https://doi.org/10.12688/f1000research.51192.1
Research Article metrics PEER REVIEW DISCONTINUED
Measure of unevenness in human genomes, described as a self-affine phase transition in a 'spin-chain’ model
[version 1; peer review: 1 not approved]
Sergey Feranchuk
Peer Reviewers Ying Ji
PUBLISHED 25 Feb 2021
https://doi.org/10.12688/f1000research.40668.1
Software Tool Article metrics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
[version 1; peer review: 2 approved]
Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll
Peer Reviewers Molly Hannigan and Christopher Nicchitta; Jordan A. Berg
  • Funders
  • The Emmes Company
  • National Institutes of Allergy and Infectious Disease
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.50798.1
Software Tool Article metrics
Interactive biomedical segmentation tool powered by deep learning and ImJoy
[version 1; peer review: 1 approved, 1 approved with reservations]
Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg
Peer Reviewers Jean-Yves Tinevez and Dmitry Ershov; Jan Funke
  • Funders
  • Knut and Alice Wallenberg Foundation
  • Swedish Research Council
  • LST Platform at KTH Royal Institute of Technology
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.51143.1
Software Tool Article metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Jacques Serizay, Julie Ahringer
Peer Reviewers Ilya Ioshikhes; Sabarinathan Radhakrishnan; Eugene Korotkov; Boris Lenhard
  • Funders
  • Wellcome Trust Senior Research Fellowship
  • Medical Research Council DTP studentship
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.24714.3
Brief Report metrics
Revised
biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab
[version 3; peer review: 2 approved]
Choumouss Kamoun, Julien Roméjon, Henri de Soyres, Apolline Gallois, Elodie Girard, Philippe Hupé
Peer Reviewers Bernard Pope; Julia Ponomarenko
  • Funder
  • Institut National Du Cancer
LATEST VERSION PUBLISHED 19 Feb 2021
https://doi.org/10.12688/f1000research.27140.2
Software Tool Article metrics
Revised
Effective image visualization for publications – a workflow using open access tools and concepts
[version 2; peer review: 2 approved]
Christopher Schmied, Helena Klara Jambor
Peer Reviewers Guillaume Jacquemet; Georgina Fletcher and David Barry
  • Funder
  • Deutsche Krebshilfe
LATEST VERSION PUBLISHED 18 Feb 2021
161-180 of 638 ARTICLES
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