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 in 
https://doi.org/10.12688/f1000research.159630.2
Brief Report metrics
Revised
Expression status transition of NOTCH1 accompanies chromatin remodeling in human early retinal progenitor cells
[version 2; peer review: 2 approved with reservations]
Yoshitoku Watabe, Sakurako Kobayashi, Takahiro Nakayama, Satoru Takahashi, Masaharu Yoshihara
Peer Reviewers Mariko Kashiwagi; Zhongjie Tang
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 22 Sep 2025
https://doi.org/10.12688/f1000research.127413.2
Research Article metrics
Revised
Effect of ACTH4-10Pro8-Gly9-Pro10 on anti-inflammatory cytokine (IL-4, IL-10, IL-13) expression in acute spinal cord injury models (male Sprague Dawley rats)
[version 2; peer review: 1 approved with reservations]
Asadullah Asadullah, Abdul Hafid Bajamal, Muhammad Arifin Parenrengi, Agus Turchan, Budi Utomo, I Ketut Sudiana, Eko Agus Subagio
Peer Reviewers Mawaddah Ar Rochmah
LATEST VERSION PUBLISHED 22 Sep 2025
https://doi.org/10.12688/f1000research.169502.1
Data Note metrics
A guide to selecting high-performing antibodies for VCP (UniProt ID: P55072) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 1 approved]
Vera Ruíz Moleón, Maryam Fotouhi, Joel Ryan, Donovan Worrall, Riham Ayoubi, Vincent Francis, Peter S McPherson, Carl Laflamme
Peer Reviewers Deborah Moshinsky
  • Funders
  • ALS Society of Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Mitacs
  • Québec Consortium for Drug Discovery
PUBLISHED 09 Sep 2025
https://doi.org/10.12688/f1000research.168971.1
Research Article metrics
rs4889 and rs5782018 polymorphisms of KISS1 gene as genetic predisposing factor for PCOS in Indonesian women
[version 1; peer review: 1 approved with reservations]
Gita Pratama, Ririn R Febri, Mila Maidarti, Budi Wiweko, Asmarinah Asmarinah, Indah S Widyahening, Trinovita Andraini, Hartanto Bayuaji, Andon Hestiantoro, Mulyoto Pangestu
Peer Reviewers Mukhri Hamdan
  • Funder
  • Fakultas Kedokteran, Universitas Indonesia
PUBLISHED 09 Sep 2025
https://doi.org/10.12688/f1000research.166880.1
Research Article metrics
The Relation of Seminal Cell-Free DNA and Total Antioxidant Capacity with  Intracytoplasmic Sperm Injection Outcomes in Iraqi Infertile men
[version 1; peer review: 1 approved]
Hadeer S. Al- Shammary, Hanan L. Al-Omary
Peer Reviewers Siti Maulida
  • Funder
  • No funding
PUBLISHED 22 Jul 2025
https://doi.org/10.12688/f1000research.159115.2
Genome Note metrics
Revised
The first mitochondrial genome of Haemagogus equinus from Jamaica
[version 2; peer review: 1 approved, 1 approved with reservations]
Simone L. Sandiford, Simmoy A. A. Noble, Samra A. Pierre, Douglas E. Norris, Renee Ali
Peer Reviewers Din Syafruddin and Puji Budi Setia Asih; Craig Wilding
  • Funders
  • NSF-Accelerator Project D-688: Computing the Biome
  • Global Infectious Diseases Research Training Program
  • Johns Hopkins Malaria Research Institute and Bloomberg Philanthropies
  • University at Buffalo Clinical and Translational Science Institute
LATEST VERSION PUBLISHED 02 Jul 2025
https://doi.org/10.12688/f1000research.160217.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for Stearoyl-CoA desaturase (SCD1) (UniProt ID: O00767) for use in western blot, immunoprecipitation, and immunofluorescence
[version 2; peer review: 1 approved, 2 approved with reservations]
Vera Ruíz Moleón, Charles Alende, Maryam Fotouhi, Sara González Bolívar, Riham Ayoubi, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Cecilia Williams and Matilda Holm; Michael L. Garelja; Deborah Moshinsky
  • Funders
  • Ontario Genomics
  • Michael J. Fox Foundation for Parkinson's Research
  • Génome Québec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 13 Jun 2025
https://doi.org/10.12688/f1000research.130430.3
Data Note metrics
Revised
Cigarette smoke alters circRNA expression in human T-cells
[version 3; peer review: 1 approved, 2 approved with reservations]
So Jin Hong, Zhaohao Liao, Kenneth W. Witwer, Ashley E. Russell
Peer Reviewers Thivanka Muthumalage; Zahraa Rahal; Meity Ardiana
  • Funder
  • National Institute on Drug Abuse
LATEST VERSION PUBLISHED 09 Apr 2025
https://doi.org/10.12688/f1000research.162356.1
Research Article metrics
Assessing neuroinflammation in vitro in a microglial model: advancing cannabinoid-based therapeutic insights
[version 1; peer review: 1 approved with reservations]
Jose-Manuel Quintero, Luis-Eduardo Diaz, Rosa Helena Bustos, Marta-Ximena Leon
Peer Reviewers Maurício dos Santos Pereira
  • Funder
  • Universidad de La Sabana
PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.153244.3
Data Note metrics
Revised
A guide to selecting high-performing antibodies for S1PR1 (UniProt ID: P21453) for use in western blot, immunoprecipitation, and immunofluorescence
[version 3; peer review: 2 approved, 1 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Charles Alende, Sara González Bolívar, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Melissa Pitman; Christian Tiede; Jieya Shao
  • Funders
  • Ontario Genomics
  • Mitacs
  • Genome Quebec
  • Emory-Sage-SGC TaRget Enablement to Accelerate Therapy Development for Alzheimer’s Disease
  • Genome Canada
  • National Institute on Aging
LATEST VERSION PUBLISHED 24 Jan 2025
https://doi.org/10.12688/f1000research.153698.1
Software Tool Article metrics
scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Yan Li, Jason Shapiro, Qiaoshan Lin, Qing Gong, Michiko Ryu, Mengjie Chen
Peer Reviewers Pedro L Baldoni; Sebastiaan Valkiers
  • Funders
  • University of Chicago
  • National Institutes of Health
  • Institute for Translational Medicine
PUBLISHED 20 Jan 2025
https://doi.org/10.12688/f1000research.151350.2
Systematic Review metrics
Revised
Diagnostic and Prognostic Values of miRNAs in High-Grade Gliomas: A Systematic Review
[version 2; peer review: 2 approved]
Renindra Ananda Aman, Mohammad Galih Pratama, Ricky Rusydi Satriawan, Irfani Ryan Ardiansyah, I Ketut Agus Suanjaya
Peer Reviewers Dessika Rahmawati; Abel Po-Hao Huang
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.123975.3
Research Article metrics
Revised
Differential gene expression during recall of behaviorally conditioned immune enhancement in rats: a pilot study
[version 3; peer review: 1 approved, 3 approved with reservations]
Markus Rueckels, Marcus Picard-Maureau
Peer Reviewers Manfred Schedlowski and Laura Lückemann; Daniele Suzete Persike de Oliveira; Marie Jakobs; Federico Bermudez-Rattoni and Daniel Osorio Gomez
  • Funder
  • Lisa-Kolk-Stiftung
LATEST VERSION PUBLISHED 10 Jan 2025
https://doi.org/10.12688/f1000research.160371.1
Data Note metrics
A guide to selecting high-performing antibodies for TAF15 (UniProt ID: Q92804) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 2 approved]
Vera Ruíz Moleón, Charles Alende, Maryam Fotouhi, Riham Ayoubi, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Deborah Moshinsky; Sian E. Evans and Carolyn Jones
  • Funders
  • Ontario Genomics
  • ALS Society of Canada
  • Génome Québec
  • ALS Association
  • Motor Neurone Disease Association
  • Mitacs
  • Genome Canada
PUBLISHED 06 Jan 2025
https://doi.org/10.12688/f1000research.155929.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for STING1 (Uniprot ID: Q86WV6) for use in western blot, immunoprecipitation, and immunofluorescence
[version 2; peer review: 3 approved, 1 approved with reservations]
Vera Ruíz Moleón, Charles Alende, Maryam Fotouhi, Riham Ayoubi, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Karen Bowman; Jieya Shao; Sheng-ce Tao; Mathias Nielsen and John LaCava
  • Funders
  • Ontario Genomics
  • Michael J. Fox Foundation for Parkinson’s Disease Research
  • Genome Quebec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 02 Jan 2025
https://doi.org/10.12688/f1000research.155356.2
Study Protocol metrics
Revised
Muscarinic receptor agonists and positive allosteric modulators in animal models of psychosis: protocol for a systematic review and meta-analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Spyridon Siafis, Nobuyuki Nomura, Johannes Schneider-Thoma, Irene Bighelli, Alexandra Bannach-Brown, Fiona J. Ramage, Francesca Tinsdeall, Ioannis Mantas, Sameer Jauhar, Sridhar Natesan, Anthony C. Vernon, Andrea de Bartolomeis, Sabine M. Hölter, Natascha I. Drude, Ulf Tölch, Wulf-Peter Hansen, Virginia Chiocchia, Oliver D. Howes, Josef Priller, Malcolm R. Macleod, Georgia Salanti, Stefan Leucht
Peer Reviewers Daniel Foster; William Messer; Xiaonan Guo
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Medical Research Council-UK
  • Federal Ministry of Education and Research
  • Wellcome Trust
LATEST VERSION PUBLISHED 02 Jan 2025
https://doi.org/10.12688/f1000research.153670.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for Huntingtin (UniProt ID: P42858) for use in western blot, immunoprecipitation, and immunofluorescence
[version 2; peer review: 5 approved, 1 approved with reservations]
Rebeka Fanti, Riham Ayoubi, Charles Alende, Maryam Fotouhi, Sara González Bolívar, Renu Chandrasekaran, Kathleen Southern, Aled M. Edwards, Rachel J. Harding, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Jieya Shao; Karen Bowman; Christian Landles; Hexige Saiyin; Srinivasa Subramaniam; Daniele Bertoglio
  • Funders
  • Ontario Genomics
  • Genome Quebec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 02 Jan 2025
https://doi.org/10.12688/f1000research.160226.1
Data Note metrics
A guide to selecting high-performing antibodies for VAPB (UniProt ID: O95292) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 3 approved, 1 approved with reservations]
Sara González Bolívar, Riham Ayoubi, Charles Alende, Maryam Fothouhi, Irina Shlaifer, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Mórotz Gábor Miklós; Sheng-ce Tao; Karen Bowman; Jieya Shao
  • Funders
  • Ontario Genomics
  • ALS Society of Canada
  • Canadian Institutes of Health Research Foundation
  • ALS Association
  • Motor Neurone Disease Association
  • Mitacs
  • Genome Quebec
  • Genome Canada
PUBLISHED 24 Dec 2024
https://doi.org/10.12688/f1000research.160174.1
Data Note metrics
A guide to selecting high-performing antibodies for STXBP1 (UniProt ID: P61764) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 1 approved]
Riham Ayoubi, Charles Alende, Maryam Fotouhi, Sara González Bolívar, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Lynne Howells
  • Funders
  • Simons Foundation Autism Research Initiative
  • Québec Consortium for Drug Discovery
PUBLISHED 24 Dec 2024
https://doi.org/10.12688/f1000research.160121.1
Data Note metrics
A guide to selecting high-performing antibodies for ADNP (UniProt ID: Q9H2P0) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 2 approved, 1 approved with reservations]
Vera Ruíz Moleón, Charles Alende, Maryam Fotouhi, Riham Ayoubi, Sara González Bolívar, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Richard O'Kennedy; Christian Peter Moritz; Illana Gozes, Maram Ganaiem and Artur Galushkin
  • Funders
  • Simons Foundation Autism Research Initiative
  • Mitacs
  • Genome Canada, Genome Quebec and Ontario Genomics
PUBLISHED 20 Dec 2024
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