DREAM Challenges
Method Article
metrics
Revised
Unsupervised gene selection for predicting cell spatial positions in the Drosophila embryo
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Peer Reviewers
Xianwen Ren;
Mark S. Cembrowski and Larissa Kraus;
Yen-Chung Chen;
Saumitra Dey Choudhury;
Komal Kumar Bollepogu Raja
- Funder
- Univerisity of Connecitcut
Method Article
metrics
Revised
Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency
[version 2; peer review: 2 approved]
Peer Reviewers
Tianci Song and Rui Kuang;
Adi Tarca
- Funders
- National Institutes of Health
- National Science Foundation
Research Article
metrics
Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Hilal Kazan;
Alexander Lachmann
- Funder
- University of the West Indies
Method Article
metrics
Revised
Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria
[version 5; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers
Sameer K. Antani;
Jeremy Burrows;
Alyssa E Barry and Myo Naung
- Funder
- University of North Carolina at Charlotte
Method Article
metrics
Revised
Prediction of cell position using single-cell transcriptomic data: an iterative procedure
[version 2; peer review: 2 approved]
Peer Reviewers
Roosevelt Alves Da Silva;
Pablo Meyer
Method Article
metrics
Revised
A predictive model of overall survival in patients with metastatic castration-resistant prostate cancer
[version 2; peer review: 2 approved]
Peer Reviewers
Motoki Shiga;
Peter K Rogan
- Funders
- University of Turku Graduate School
- Sigrid Juselius Foundation
Method Article
metrics
Revised
Identifying communities from multiplex biological networks by randomized optimization of modularity
[version 2; peer review: 3 approved, 1 approved with reservations]
Peer Reviewers
Emre Guney;
Lenore J. Cowen;
Yasir Suhail;
Arda Halu
- Funders
- Excellence Initiative of Aix- Marseille University
- French “Plan Cancer 2009–2013”
- Centre National de la Recherche Scientifique
Method Article
metrics
Recursive module extraction using Louvain and PageRank
[version 1; peer review: 2 approved]
Peer Reviewers
Raghvendra Mall;
Alina Sîrbu
Method Article
metrics
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Eric E Schadt;
Yunpeng Liu
Method Article
metrics
Revised
Heterogeneous ensembles for predicting survival of metastatic, castrate-resistant prostate cancer patients
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Donna P. Ankerst;
Jinfeng Xiao;
Amber L Simpson
Method Article
metrics
DWCox: A density-weighted Cox model for outlier-robust prediction of prostate cancer survival
[version 1; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers
Motoki Shiga;
Sebastian Pölsterl;
Riku Klen and Mehrad Mahmoudian
- Funders
- National Institutes of Health
- National Science Foundation
Method Article
metrics
Survival prognosis and variable selection: A case study for metastatic castrate resistant prostate cancer patients
[version 1; peer review: 2 approved]
Peer Reviewers
Sarah Lemler;
Jacob von Bornemann Hjelmborg
Method Article
metrics
Two-step feature selection for predicting survival time of patients with metastatic castrate resistant prostate cancer
[version 1; peer review: 2 approved]
Peer Reviewers
Niels Richard Hansen and Søren Wengel Mogensen;
Ka Yee Yeung
Method Article
metrics
An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients
[version 1; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers
Stephen R. Piccolo;
Ka Yee Yeung and Daniel Kristiyanto;
Russell Greiner and Luke Kumar
Method Article
metrics
Using complex networks for refining survival prognosis in prostate cancer patient
[version 1; peer review: 2 approved]
Peer Reviewers
Osvaldo Anibal Rosso;
Diego Raphael Amancio
Research Article
metrics
Predicting discontinuation of docetaxel treatment for metastatic castration-resistant prostate cancer (mCRPC) with random forest
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Vishakh Hegde and Karen Sachs;
John E. Mittler
Method Article
metrics
Predicting survival time for metastatic castration resistant prostate cancer: An iterative imputation approach
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Devin C. Koestler;
Ruoqing Zhu;
C Jason Liang and Wenjuan Gu
Method Article
metrics
Three general concepts to improve risk prediction: good data, wisdom of the crowd, recalibration
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Sebastian Pölsterl;
Riccardo de Bin
Software Tool Article
metrics
Revised
DREAMTools: a Python package for scoring collaborative challenges
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers
Konrad Hinsen;
Rafael Najmanovich;
Nicola J. Mulder
Method Article
metrics
Prediction of fine-tuned promoter activity from DNA sequence
[version 1; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers
Paul Pavlidis;
Jianhua Ruan;
Jan Grau