Genomics and Genetics
Genomics and Genetics
Data Note
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AWAITING PEER REVIEW
De novo transcriptome assembly and annotation for gene discovery in the streamside salamander (Ambystoma barbouri)
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funders
- Tennessee Wildlife Resources Agency
- Center for the Management, Utilization and Protection of Water Resources at Tennessee Technological University
Research Article
metrics
AWAITING PEER REVIEW
DOES RS11191580 NT5C2 AND DRD2-141C INS/DEL POLYMOPRHIMSM AFFECT SCHIZOPHRENIA SYMPTOMS SEVERITY IN BATAK POPULATION
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
Genome Note
metrics
AWAITING PEER REVIEW
High-quality draft genome sequence of endophytic Kluyvera ascorbata strain PCL31 isolated from Piper crocatum (red betel)
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Lembaga Pengelola Dana Pendidikan
Research Article
metrics
Revised
Genomic characterization of ESBL-producing Escherichia coli isolates from patients in an orthopaedic ward in Mwanza, Tanzania
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Peer Reviewers
Ayorinde O Afolayan;
Sijo Asokan;
Christopher H. Connor
- Funders
- Fogarty International Center of the National Institutes of Health
- Grand Challenges Africa programme
- Grand Challenges Africa programme
Review
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Revised
Mechanisms Associated with PINK1 Variants in Parkinson's Disease
[version 3; peer review: 2 approved, 1 not approved]
Peer Reviewers
Eman Ezzeldien Mohamed;
Ryan L Davis;
DOMENICO PRATICO
Genome Note
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The complete mitochondrial genomes of four “bee-killer” assassin bugs (Hemiptera: Reduviidae: Apiomerus) recovered using shallow whole-genome sequencing
[version 1; peer review: 1 approved with reservations]
Peer Reviewers
Annabel Whibley
- Funder
- Dirección de Investigación, Universidad Nacional de Colombia
Genome Note
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Revised
The complete chloroplast genome of Dianthus helenae, an endemic species with medicinal potential from the Nuratau Range, Uzbekistan
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Hoang Dang Khoa Do;
Ruslan Kalendar
Genome Note
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Revised
Complete chloroplast genomes of endemic Astragalus and Oxytropis species from Uzbekistan
[version 3; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Hoang Dang Khoa Do;
Yoshinori Fukasawa
- Funder
- This research was carried out within the framework of the projects “Digital Nature: Development of a digital platform for the flora of Central Uzbekistan” (2025–2029), and “Assessing climate change adaptation in endangered plants of Uzbekistan: A DNA barcoding approach” (AL-9224104464), implemented by the Institute of Botany, Academy of Sciences of the Republic of Uzbekistan.
Research Article
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Revised
Beyond the Beauty: Meristic and Genomic Signatures of Bangka’s Endemic Betta Fishes
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Bingpeng Xing;
Nicholas S Kron;
Axel Janke
- Funder
- Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
Research Article
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Factors Associated with Kidney Stone Occurrence: A Path Analysis of Genetic Polymorphism CaSR, CLDN14, VDR, ALPL, Clinical Factors, and Demographical Characteristics
[version 1; peer review: 1 approved]
Peer Reviewers
Francesco Pintus
- Funder
- Publikasi Terindeks Internasional (PUTI)
Genome Note
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The complete chloroplast genome of Lepidium olgae, a narrow endemic species of the Nuratau Range, Uzbekistan
[version 1; peer review: 1 approved with reservations]
Peer Reviewers
Abdullah Abdullah
Genome Note
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The complete and annotated mitochondrial genome of Hemileia vastatrix Race I, causal agent of coffee leaf rust
[version 1; peer review: 2 approved]
Peer Reviewers
Theo Llewellyn;
Martin Coetzee
- Funder
- Colombian Coffee Growers Federation (FNC) / National Coffee Research Center (CENICAFE)
Policy Brief
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Strengthening molecular biodiversity research and monitoring in Norway – connecting tools, data and people
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Stephan Koblmüller;
Maxine Piggott
- Funder
- The Research Council of Norway
Research Article
metrics
Revised
The Genetic Association of Single Nucleotide Polymorphisms of SERPINE1 (rs6092) and IFNAR2 (rs1051393, rs2229207) Genes Is Related to Post Covid-19 Respiratory Syndrome
[version 2; peer review: 1 approved, 1 not approved]
Peer Reviewers
Shrikant Verma;
Abdullah Al Saba
- Funder
- Riset Inovasi dan Indonesia Maju–Lembaga Pengelola Dana Pendidikan
Review
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Revised
White paper: standards for handling and analyzing plant pan-genomes
[version 3; peer review: 3 approved, 1 approved with reservations]
Peer Reviewers
Sunil Kumar Sahu;
Xiaoming Xie;
Rutwik Barmukh;
Jianping Xu
- Funders
- ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
- Federal Ministry of Education and Research
Genome Note
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Complete genome sequence of Halorubrum pleomorphic virus 8
[version 1; peer review: 1 approved]
Peer Reviewers
Jimmy Saw
- Funders
- the University of Helsinki and Research Council of Finland by funding for FINStruct and Instruct Centre FI, part of Biocenter Finland and Instruct-ERIC and Horizon MSCA
- Research Council of Finland
- Helsinki University Library
- European Research Council (ERC) under the European Union’s Horizon Europe research and innovation programme
- Kone Foundation
Genome Note
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Revised
Draft genome sequence of a predatory bacterium from northern peatland soil
[version 2; peer review: 1 approved with reservations]
Peer Reviewers
Kai Blin and Judit Szenei
- Funders
- Research Council of Finland
- Kone Foundation
Research Article
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Revised
First Gonadal Stages of Bonito, Sarda chiliensis (Perciformes: Scombridae) on the Pacific Coast of Northern Chile
[version 2; peer review: 2 approved, 1 not approved]
Peer Reviewers
Darmawan Setia Budi;
Constantinos C Mylonas;
Md. Mahiuddin Zahangir
- Funder
- Arturo Prat University
Research Article
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Revised
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 3; peer review: 3 approved]
Peer Reviewers
Renee Ali;
Michael J Raupach;
Arun Arumugaperumal
- Funder
- This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
Research Article
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Revised
Identification of Pathogenic PKHD1 Variants in Infants with Autosomal Recessive Polycystic Kidney Disease from the Dhofar Region, Oman
[version 2; peer review: 2 approved]
Peer Reviewers
Hana Yang;
Consolato M Sergi
- Funders
- Kidney Research UK
- LifeArc
- Horizon Europe
- Medical Research Council