Genomics and Genetics
Genomics and Genetics
Genome Note
metrics
Revised
The first whole-genome sequence of a prospective novel sponge-associated Streptomyces strain from Indonesia with a long 1.5 Mbp terminal inverted repeat
[version 3; peer review: 2 approved]
Peer Reviewers
Arzu Karahan;
Matsapume Detcharoen
- Funders
- Rumah Program Biodiversitas, ORHL-BRIN
- Rumah Program Artificial, Intelligence, Big Data & Teknologi Komputasi, OREI-BRIN
- Riset dan Inovasi untuk Indonesia Maju—Indonesia Endowment Funds for Education (LPDP)
Research Article
metrics
AWAITING PEER REVIEW
Plant Microbiome of the Arabian Peninsula Desert Reveals Unique Structural and Functional Adaptations Supporting Climate Resilience
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Sandooq Al Watan
Research Article
metrics
Revised
Characterization of red pigmented yeasts and genes associated with astaxanthin synthesis in Rhodotorula mucilaginosa HL26-1 and Rhodotorula paludigena LL69-1
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Kizhakkeyveetil Abdul Saleem Nimsi;
ANANDA NANJUNDASWAMY;
Kokati Venkata Bhaskara Rao
- Funder
- Thailand Science Research and Innovation Fund Chulalongkorn University
Research Article
metrics
AWAITING PEER REVIEW
Assessing nonlinearities in the GFP random mutagenesis landscape using the Power Transform
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Russian Science Foundation
Software Tool Article
metrics
Revised
Identification of Viral Variants from Functional Genomics Data
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Dóra Tombácz;
Anuj Kumar
- Funder
- Deutsche Forschungsgemeinschaft
Genome Note
metrics
AWAITING PEER REVIEW
The complete genome sequence of the ghost bat, Macroderma gigas
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funders
- Australian Research Council Linkage Project “The Macroderma initiative: conserving ghost bats and informing development
- Australian Research Council
- Australian Government National Collaborative Research Infrastructure Strategy (NCRIS)
Research Article
metrics
Insights into the Datasets, Tools, and Training Needs of the AnVIL Community: 2024
[version 1; peer review: 1 approved with reservations]
Peer Reviewers
Hassan Rehan
- Funder
- National Institutes of Health, National Human Genome Research Institute
Genome Note
metrics
Revised
Re-sequencing of the complete chloroplast genome of Cinnamomum burmanni (Nees & T.Nees) Blume (Lauraceae) from Indonesia using MinION Oxford Nanopore Technologies
[version 3; peer review: 3 approved, 2 not approved]
Peer Reviewers
Hoang Dang Khoa Do;
Jakub Sawicki;
Minh Trong Quang;
Nawaz Haider Bashir;
Zinian WU
- Funder
- National Competitive Basic Research 2022-2023
Research Article
metrics
AWAITING PEER REVIEW
Diversity and functionality of the gut microbiota in hypertensive patients from different regions of Peru
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Universidad Peruana Unión
Research Article
metrics
First Gonadal Stages of Bonito, Sarda chiliensis (Perciformes: Scombridae) on the Pacific Coast of Northern Chile
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Peer Reviewers
Darmawan Setia Budi;
Constantinos C Mylonas;
Md. Mahiuddin Zahangir
- Funder
- Arturo Prat University
Research Article
metrics
The Genetic Association of Single Nucleotide Polymorphisms of SERPINE1 (rs6092) and IFNAR2 (rs1051393, rs2229207) Genes Is Related to Post Covid-19 Respiratory Syndrome
[version 1; peer review: 1 approved with reservations, 1 not approved]
Peer Reviewers
Shrikant Verma;
Abdullah Al Saba
- Funder
- Riset Inovasi dan Indonesia Maju–Lembaga Pengelola Dana Pendidikan
Genome Note
metrics
Revised
The complete chloroplast genome of Phyllanthus acidus (L.) Skeels (Phyllanthaceae)
[version 3; peer review: 1 approved, 4 approved with reservations]
Peer Reviewers
Jessica D. Rey;
Qiang Li;
Shiou Yih Lee;
Yoshinori Fukasawa;
Sunil Kumar Sahu
- Funder
- Nguyen Tat Thanh University
Review
metrics
Revised
White paper: standards for handling and analyzing plant pan-genomes
[version 2; peer review: 2 approved, 2 approved with reservations]
Peer Reviewers
Sunil Kumar Sahu;
Xiaoming Xie;
Rutwik Barmukh;
Jianping Xu
- Funders
- ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
- Federal Ministry of Education and Research
Genome Note
metrics
Revised
Reference-guided draft genome assembly of the slender walking catfish, Prophagorus nieuhofii
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Peer Reviewers
Gulab D. Khedkar;
Geoffrey C. Waldbieser;
Haiyang Liu;
Adauto Cardoso
- Funder
- Lembaga Pengelola Dana Pendidikan
Software Tool Article
metrics
Sixth Annual BCM Hackathon on Structural Variation and Pangenomics
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Istvan Albert;
Colin Diesh
- Funders
- Shwetha V Kumar is supported by CPRIT grant #RP210037 (PI Aaron Thrift)
- Ryan Doughty is supported by a training fellowship from the Gulf Coast Consortia, on the NLM Training Program in Biomedical Informatics & Data Science (T15LM007093)
- Sarah Fross is supported by a training grant from the National Institutes of Health under Award Number 5T32GM135748-04.
- Sedlazeck NIH grant: 1UG3NS132105-01, 1U01HG011758-01
- Jędrzej Kubica is supported by the Ministry of Science and Higher Education (Poland) as a project under the program Excellence Initiative – Research University (2020–2026) (decision no.: IV.2.3./30/2024) and the France 2030 state funding managed by the National Research Agency with the reference
- Shaghayegh Beheshti is supported by a training grant from the National Institutes of Health under Award Number 5T32GM139534-04 and NHGRI U01 HG011758.
- The research was supported by Cancer Prevention and Research Institute of Texas under grant number: #RP210037
Research Article
metrics
Identification of Pathogenic PKHD1 Variants in Infants with Autosomal Recessive Polycystic Kidney Disease from the Dhofar Region, Oman
[version 1; peer review: 2 approved]
Peer Reviewers
Hana Yang;
Consolato M Sergi
- Funders
- Kidney Research UK
- LifeArc
- Horizon Europe
- Medical Research Council
Genome Note
metrics
Chromosome-level genome assembly of the hamour (orange-spotted grouper), Epinephelus coioides
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Jayan Duminda M Senevirathna;
Merly Escalona;
Karim Gharbi
- Funders
- Spanish Government, Ministry of Science, Innovation and Universities and Generalitat de Catalunya through the Departament de Recerca i Universitats and Departament de Salut
- Qatar National Research Fund
- Roslin Institute Strategic Programme Award
Research Article
metrics
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Renee Ali;
Michael J Raupach
- Funder
- This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
Study Protocol
metrics
Revised
Comparison of serum vitamin D level and vitamin D receptor gene FokI polymorphism in leprosy patients with and without trophic ulcers: protocol for a case-control study
[version 3; peer review: 3 approved with reservations]
Peer Reviewers
Khairuddin Djawad;
Ravindra Turankar;
ANABELL ALVARADO NAVARRO
- Funder
- Research and Development, Universitas Indonesia under the Hibah PUTI 2023 scheme
Genome Note
metrics
Draft genome sequence of a predatory bacterium from northern peatland soil
[version 1; peer review: 1 approved with reservations]
Peer Reviewers
Kai Blin and Judit Szenei
- Funders
- Research Council of Finland
- Kone Foundation