Genomics and Genetics

Genomics and Genetics

Plant Genomics

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1-14 of 14 ARTICLES
 in 
https://doi.org/10.12688/f1000research.180038.2
Genome Note metrics
Revised
The complete chloroplast genome of Dianthus helenae, an endemic species with medicinal potential from the Nuratau Range, Uzbekistan
[version 2; peer review: 1 approved with reservations]
Ibrokhimjon Ergashov, Farkhodjon Mingboev, Farruhbek Rasulov, Diyorjon Hamrayev, Davronjon Sultonov, Risolat Achilova, Saidkamol Xaydarov, Bakhrom Khujamkulov, Feruza Utayeva, Oysha Jabborova, Ziyoviddin Yusupov
Peer Reviewers Hoang Dang Khoa Do
LATEST VERSION PUBLISHED 01 Jun 2026
https://doi.org/10.12688/f1000research.178398.3
Genome Note metrics
Revised
Complete chloroplast genomes of endemic Astragalus and Oxytropis species from Uzbekistan
[version 3; peer review: 1 approved, 1 approved with reservations]
Diyorjon Hamrayev, Bobur Karimov, Husniddin Esanov, Sodik Khuzhzhiev, Maxzuna Nasretdinova, Oysha Jabborova, Oybek Omonov, Mohistara Sharipova, Ziyoviddin Yusupov, Alijon Esankulov
Peer Reviewers Hoang Dang Khoa Do; Yoshinori Fukasawa
  • Funder
  • This research was carried out within the framework of the projects “Digital Nature: Development of a digital platform for the flora of Central Uzbekistan” (2025–2029), and “Assessing climate change adaptation in endangered plants of Uzbekistan: A DNA barcoding approach” (AL-9224104464), implemented by the Institute of Botany, Academy of Sciences of the Republic of Uzbekistan.
LATEST VERSION PUBLISHED 01 Jun 2026
https://doi.org/10.12688/f1000research.179708.1
Genome Note metrics AWAITING PEER REVIEW
The complete chloroplast genome of Lepidium olgae, a narrow endemic species of the Nuratau Range, Uzbekistan
[version 1; peer review: awaiting peer review]
Ibrokhimjon Ergashov, Farkhodjon Mingboev, Farruhbek Rasulov, Azizbek Togaev, Kibriyo Rasulova, Abdumo'min Sindorov, Muhayo Tagayeva, G‘iyos Buxorov, Ziyoviddin Yusupov, Sherzod Yakhshiboyev
Peer Reviewers Invited
PUBLISHED 01 Jun 2026
https://doi.org/10.12688/f1000research.166538.3
Review metrics
Revised
White paper: standards for handling and analyzing plant pan-genomes
[version 3; peer review: 3 approved, 1 approved with reservations]
Marc C. Heuermann, Pedro Barros, Sebastian Beier, Heidrun Gundlach, Jorge Alvarez-Jarreta, Keywan Hassani-Pak, Patrick König, Anne Fiebig, Tim Godec, Kristina Gruden, Nadja Nolte, Marko Petek, Uwe Scholz, Maja Zagorščak, Klaas Vandepoele, Michiel Van Bel
Peer Reviewers Sunil Kumar Sahu; Xiaoming Xie; Rutwik Barmukh; Jianping Xu
  • Funders
  • ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
  • Federal Ministry of Education and Research
LATEST VERSION PUBLISHED 07 May 2026
https://doi.org/10.12688/f1000research.172949.1
Research Article metrics
Plant Microbiome of the Arabian Peninsula Desert Reveals Unique Structural and Functional Adaptations Supporting Climate Resilience
[version 1; peer review: 1 approved with reservations]
Walaa K. Mousa, Ruqaia AlShami, Rose Ghemrawi
Peer Reviewers bao liu and Ying Wu
  • Funder
  • Sandooq Al Watan
PUBLISHED 06 Jan 2026
https://doi.org/10.12688/f1000research.139906.2
Data Note metrics
Revised
A compilation of histidine kinase genes in the genome of a tissue macerating Pectobacterium brasiliense isolated from potato in South Africa
[version 2; peer review: 1 approved]
Sarah Oluwatobi Otun, Khayalethu Ntushelo
Peer Reviewers Iris Yedidia
LATEST VERSION PUBLISHED 17 Jun 2024
https://doi.org/10.12688/f1000research.144155.1
Genome Note metrics
Long-read datasets of Kayu Bawang (Azadirachta excelsa (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships
[version 1; peer review: 2 approved with reservations]
Efratenta Katherina Depari, Nurheni Wijayanto, Lina Karlinasari, Mohamad Rafi, Iskandar Zulkarnaen Siregar
Peer Reviewers Hoang Dang Khoa Do; Maria Stefanie Dwiyanti
  • Funder
  • Beasiswa Pendidikan Pascasarjana Dalam Negeri (BPPDN) 2019
PUBLISHED 05 Apr 2024
https://doi.org/10.12688/f1000research.138150.3
Genome Note metrics
Revised
Plastid genome of Passiflora tripartita var. mollissima (poro-poro) from Huánuco, Peru
[version 3; peer review: 2 approved]
Flavio Aliaga, Mario Zapata-Cruz, Silvia Ana Valverde-Zavaleta
Peer Reviewers Rahul G Shelke; Abdullah Abdullah
  • Funder
  • Plant Sience Laboratory
LATEST VERSION PUBLISHED 19 Feb 2024
https://doi.org/10.12688/f1000research.126463.2
Software Tool Article metrics
Revised
A2TEA: Identifying trait-specific evolutionary adaptations
[version 2; peer review: 2 approved]
Tyll Stöcker, Carolin Uebermuth-Feldhaus, Florian Boecker, Heiko Schoof
Peer Reviewers Manuel Aranda and Octavio Salazar Moya; Rahul Siddharthan
LATEST VERSION PUBLISHED 12 Apr 2023
https://doi.org/10.12688/f1000research.122437.2
Research Article metrics
Revised
Genomic prediction in plants: opportunities for ensemble machine learning based approaches
[version 2; peer review: 1 approved, 2 approved with reservations]
Muhammad Farooq, Aalt D.J. van Dijk, Harm Nijveen, Shahid Mansoor, Dick de Ridder
Peer Reviewers Muhammad Tehseen Azhar; Miguel Pérez-Enciso; Yongkang Kim
  • Funder
  • Wageningen University and Research
LATEST VERSION PUBLISHED 10 Jan 2023
https://doi.org/10.12688/f1000research.122453.1
Review metrics
Understanding floral biology for CRISPR-based modification of color and fragrance in horticultural plants
[version 1; peer review: 2 approved with reservations]
Zulqurnain Khan, Asim Razzaq, Tahmina Sattar, Aftab Ahmed, Sultan Habibullah Khan, Muhammad Zubair Ghouri
Peer Reviewers Muhammad Azam; Albert Chern Sun Wong
PUBLISHED 28 Jul 2022
https://doi.org/10.12688/f1000research.74524.1
Brief Report metrics
An Atlas of Plant Transposable Elements
[version 1; peer review: 2 approved]
Daniel Longhi Fernandes Pedro, Tharcisio Soares Amorim, Alessandro Varani, Romain Guyot, Douglas Silva Domingues, Alexandre Rossi Paschoal
Peer Reviewers Gökhan Karakülah; Adriana Ludwig
  • Funders
  • Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES)
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico
  • NAPI de Bioinformática - Fundação Araucária
  • NVIDIA from the GPU Grant Program 2019 - Accelerated Data Science Call for the GPU Seed Units: Titan V device
  • PROPPG - UTFPR
PUBLISHED 24 Nov 2021
https://doi.org/10.12688/f1000research.38156.1
Research Article metrics
Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
[version 1; peer review: 2 approved]
Xiao Ma, Jeanine L. Olsen, Thorsten B.H. Reusch, Gabriele Procaccini, Dave Kudrna, Melissa Williams, Jane Grimwood, Shanmugam Rajasekar, Jerry Jenkins, Jeremy Schmutz, Yves Van de Peer
Peer Reviewers Jarkko Salojärvi; Vratislav Peska
  • Funder
  • the DOE-Joint Genome Institute, Berkeley, CA, USA
PUBLISHED 15 Apr 2021
https://doi.org/10.12688/f1000research.44714.1
Data Note metrics
Draft genome assembly of the biofuel grass crop Miscanthus sacchariflorus
[version 1; peer review: 2 approved]
Jose De Vega, Iain Donnison, Sarah Dyer, Kerrie Farrar
Peer Reviewers Diego Mauricio Riaño-Pachón; Maria Stefanie Dwiyanti
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 18 Jan 2021
1-14 of 14 ARTICLES
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