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https://doi.org/10.12688/f1000research.51192.1
Research Article metrics PEER REVIEW DISCONTINUED
Measure of unevenness in human genomes, described as a self-affine phase transition in a 'spin-chain’ model
[version 1; peer review: 1 not approved]
Sergey Feranchuk
Peer Reviewers Ying Ji
PUBLISHED 25 Feb 2021
https://doi.org/10.12688/f1000research.51143.1
Software Tool Article metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Jacques Serizay, Julie Ahringer
Peer Reviewers Ilya Ioshikhes; Sabarinathan Radhakrishnan; Eugene Korotkov; Boris Lenhard
  • Funders
  • Wellcome Trust Senior Research Fellowship
  • Medical Research Council DTP studentship
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.26848.2
Software Tool Article metrics
Revised
CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline
[version 2; peer review: 2 approved]
Dustin B. Miller, Stephen R. Piccolo
Peer Reviewers Soohyun Lee; Sushant Patil
LATEST VERSION PUBLISHED 10 Feb 2021
https://doi.org/10.12688/f1000research.27800.1
Research Article metrics
Influence of polymorphisms in the vascular endothelial growth factor gene on allograft rejection after kidney transplantation: a meta-analysis
[version 1; peer review: 2 approved]
Thanee Eiamsitrakoon, Phuntila Tharabenjasin, Noel Pabalan, Hamdi Jarjanazi, Adis Tasanarong
Peer Reviewers Ileana Constantinescu and Ion Maruntelu; Iman Karimzadeh
PUBLISHED 10 Feb 2021
https://doi.org/10.12688/f1000research.29978.1
Research Article metrics
Differential activation of c-Fos and Egr1 during development of the mouse visual cortex
[version 1; peer review: 1 approved, 1 approved with reservations]
Anna Ivanova, Pavel Rogozin, Grigori Enikolopov, Konstantin Anokhin, Alexander Lazutkin
Peer Reviewers Alison Barth; Marina Yu Khodanovich
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • Russian Science Foundation
PUBLISHED 08 Feb 2021
https://doi.org/10.12688/f1000research.28291.1
Research Article metrics
Analysis of rs1048943 in the CYP1A1 gene in laryngeal cancer - a case control study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Marwa Abdalwahab, Mona Ellaithi
Peer Reviewers Vijaylakshmi Jain; Tracie Cheng
PUBLISHED 05 Feb 2021
https://doi.org/10.12688/f1000research.25713.2
Software Tool Article metrics
Revised
VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach
[version 2; peer review: 1 approved, 2 approved with reservations]
Priyansh Srivastava, Mehak Talwar, Aishwarya Yadav, Alakto Choudhary, Sabyasachi Mohanty, Samuel Bharti, Priyanka Narad, Abhishek Sengupta
Peer Reviewers Dinesh Gupta; Mitesh Dwivedi and Rasheedunnisa Begum; Animesh A Sinha
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.24854.2
Research Article metrics
Revised
Detection of antifungal drug-resistant and ERG11 gene mutations among clinical isolates of Candida species isolated from Khartoum, Sudan.
[version 2; peer review: 2 approved, 1 not approved]
Ahmed Osman Mohamed, Malik Suliman Mohamed, Mohamed Abdelrahman Hussain, Ibrahim Fatahalrahman Ahmed
Peer Reviewers Rasoul Mohammadi; Raja Ahsan Aftab; Muhammad Sajid Hamid Akash
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.47692.1
Research Article metrics
Complex haploinsufficient interaction between APC11 and CYCLIN A1;2/TARDY ASYNCHRONOUS MEIOSIS in embryo development and seed germination in Arabidopsis
[version 1; peer review: 2 not approved]
Ming Yang, Yixing Wang, Lei Guo, Chun-Ming Liu
Peer Reviewers Xing-You Gu and Bhupinder Singh Batth; Takashi Hirayama
  • Funder
  • Ministry of Science and Technology of the People's Republic of China
PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.23712.4
Research Article metrics
Revised
Eggshell membrane for DNA sexing of the endangered Maleo (Macrocephalon maleo)
[version 4; peer review: 2 approved]
Pramana Yuda, Andie Wijaya Saputra
Peer Reviewers Sena Adi Subrata; Jessica Worthington Wilmer
  • Funders
  • E-PASS Project
  • Universitas Atma Jaya Yogyakarta
LATEST VERSION PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.26429.2
Software Tool Article metrics
Revised
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks
[version 2; peer review: 2 approved]
Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
Peer Reviewers Kim-Anh Lê Cao; Anais Baudot, Judith Lambert and Laurent Tichit
  • Funders
  • Villum Fonden
  • Horizon 2020
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Jan 2021
https://doi.org/10.12688/f1000research.44714.1
Data Note metrics
Draft genome assembly of the biofuel grass crop Miscanthus sacchariflorus
[version 1; peer review: 2 approved]
Jose De Vega, Iain Donnison, Sarah Dyer, Kerrie Farrar
Peer Reviewers Diego Mauricio Riaño-Pachón; Maria Stefanie Dwiyanti
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.28215.1
Brief Report metrics
Evolution of SARS-CoV-2 virus and assessment of the effectiveness of COVID-19 vaccine
[version 1; peer review: 2 approved]
Veljko Veljkovic, Vladimir Perovic, Isabelle Chambers, Slobodan Paessler
Peer Reviewers Ursula Dietrich; Marwa Osama Elgendy
  • Funder
  • Agricultural Department of North Dakota
PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.26170.2
Research Article metrics
Revised
Development of species-specific SCAR markers for identification and authentication of three rare Peninsular Malaysian endemic Coelogyne (Orchidaceae) orchids
[version 2; peer review: 2 approved]
Yoh Kok Hon, Christina Seok-Yien Yong, Janna Ong Abdullah, Rusea Go
Peer Reviewers Mohd Norfaizal Ghazali; Jean Wan Hong Yong
  • Funder
  • Universiti Putra Malaysia
LATEST VERSION PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.26880.2
Software Tool Article metrics
Revised
Recursive Cluster Elimination based Rank Function (SVM-RCE-R) implemented in KNIME
[version 2; peer review: 3 approved]
Malik Yousef, Burcu Bakir-Gungor, Amhar Jabeer, Gokhan Goy, Rehman Qureshi, Louise C. Showe
Peer Reviewers Marco Chierici; Osman Ugur Sezerman; Abhishek Kumar
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.19080.2
Study Protocol metrics
Revised
A recall-by-genotype study on polymorphisms in the TMPRSS6 gene and oral iron absorption: a study protocol
[version 2; peer review: 1 approved, 1 approved with reservations]
Momodou W. Jallow, Susana Campino, Andrew M. Prentice, Carla Cerami
Peer Reviewers Dale R. Nyholt and Hamzeh MESRIAN TANHA; Alida Melse-Boonstra
  • Funders
  • Department for International Development
  • Medical Research Council UK
LATEST VERSION PUBLISHED 04 Jan 2021
https://doi.org/10.12688/f1000research.26632.1
Research Article metrics
Glibenclamide, ATP and metformin increases the expression of human bile salt export pump ABCB11
[version 1; peer review: 1 approved, 2 approved with reservations]
Nisha Vats, Ravi Chandra Dubey, Madhusudana Girija Sanal, Pankaj Taneja, Senthil Kumar Venugopal
Peer Reviewers Premkumar Kumpati; Jayanta Roy-Chowdhury; Amit Dash
  • Funders
  • Science and Engineering Research Board
  • Department of Biotechnology, Ministry of Science and Technology, India
PUBLISHED 22 Dec 2020
https://doi.org/10.12688/f1000research.20916.2
Method Article metrics
Revised
Fast effect size shrinkage software for beta-binomial models of allelic imbalance
[version 2; peer review: 1 approved, 2 approved with reservations]
Joshua P. Zitovsky, Michael I. Love
Peer Reviewers Matthew Stephens; Jarad Niemi and Ignacio Alvarez-Castro; Ernest Turro
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 14 Dec 2020
https://doi.org/10.12688/f1000research.27262.1
Method Article metrics
A pipeline to analyse time-course gene expression data
[version 1; peer review: 2 approved with reservations]
Nelle Varoquaux, Elizabeth Purdom
Peer Reviewers Michael I. Love; Rodolphe Thiébaut
  • Funders
  • U.S. Department of Energy
  • École Normale Supérieure
  • Gordon and Betty Moore Foundation
  • Alfred P. Sloan Foundation
PUBLISHED 11 Dec 2020
https://doi.org/10.12688/f1000research.27893.1
Method Article metrics
A guide to creating design matrices for gene expression experiments
[version 1; peer review: 2 approved]
Charity W. Law, Kathleen Zeglinski, Xueyi Dong, Monther Alhamdoosh, Gordon K. Smyth, Matthew E. Ritchie
Peer Reviewers Federico Marini; Jenny Drnevich
  • Funders
  • National Health and Medical Research Council
  • Chan Zuckerberg Initiative
PUBLISHED 10 Dec 2020
261-280 of 2,038 ARTICLES
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