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https://doi.org/10.12688/f1000research.22021.4
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Revised
Effects of polyisoprenoids from Avicennia lanata and Avicennia alba leaves on the gene expression of PI3K, Akt1, mTOR, P53, and EGFR in human colorectal adenocarcinoma WiDr cells
[version 4; peer review: 1 approved, 2 not approved]
Taufiq Qurrohman, Poppy Anjelisa Zaitun Hasibuan, Arif Nuryawan, Sumaiyah Sumaiyah, Etti Sartina Siregar, Mohammad Basyuni
Peer Reviewers Ewa Swiezewska and Liliana Surmacz; Aldes Lesbani; Amos Fatokun
  • Funder
  • Ministry of Research, Technology and Higher Education of the Republic of Indonesia
LATEST VERSION PUBLISHED 09 Dec 2020
https://doi.org/10.12688/f1000research.24808.2
Review metrics
Revised
SMARCB1/INI1-deficient tumors of adulthood
[version 2; peer review: 2 approved]
Nathaniel A. Parker, Ammar Al-Obaidi, Jeremy M. Deutsch
Peer Reviewers Conor Patrick Malone; Abdulqadir Nashwan
LATEST VERSION PUBLISHED 09 Dec 2020
https://doi.org/10.12688/f1000research.27681.1
Brief Report metrics
Phylogenetic analysis of the betacoronavirus S1 subunit
[version 1; peer review: 1 approved with reservations, 1 not approved]
Irina Zyrianova
Peer Reviewers Houcemeddine Othman; Peng Zhou
  • Funder
  • The Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 03 Dec 2020
https://doi.org/10.12688/f1000research.27188.1
Software Tool Article metrics
isa4j: a scalable Java library for creating ISA-Tab metadata
[version 1; peer review: 2 approved]
Dennis Psaroudakis, Feng Liu, Patrick König, Uwe Scholz, Astrid Junker, Matthias Lange, Daniel Arend
Peer Reviewers Massimiliano Izzo; Nils Hoffmann
  • Funders
  • ELIXIR
  • German Ministry of Education and Research (BMBF)
PUBLISHED 03 Dec 2020
https://doi.org/10.12688/f1000research.26524.1
Data Note metrics
Complete mitochondrial genome of the endangered species Brycon nattereri (Characiformes, Characidae)
[version 1; peer review: 2 approved with reservations]
Snaydia Viegas Resende, Rubens Pasa, Fabiano Bezerra Menegídio, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
Peer Reviewers Yong Zhang; Dora Davies and Juan José Lauthier
PUBLISHED 18 Nov 2020
https://doi.org/10.12688/f1000research.24956.2
Software Tool Article metrics
Revised
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler
[version 2; peer review: 2 approved]
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Peer Reviewers Egon L. Willighagen; Ewy Mathe
  • Funders
  • Eesti Teadusagentuur
  • Seventh Framework Programme
  • European Regional Development Fund
LATEST VERSION PUBLISHED 17 Nov 2020
https://doi.org/10.12688/f1000research.23214.2
Software Tool Article metrics
Revised
CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets
[version 2; peer review: 2 approved, 1 not approved]
Sandeep Kasaragod, Varshasnata Mohanty, Ankur Tyagi, Santosh Kumar Behera, Arun H. Patil, Sneha M. Pinto, T. S. Keshava Prasad, Prashant Kumar Modi, Harsha Gowda
Peer Reviewers Suresh Mathivanan; Richard Kumaran Kandasamy; Jorge Duitama and Daniel Mahecha
  • Funders
  • Indian Council of Medical Research
  • Department of Science and Technology, Ministry of Science and Technology, India
  • Department of Biotechnology, Ministry of Science and Technology, India
LATEST VERSION PUBLISHED 16 Nov 2020
https://doi.org/10.12688/f1000research.24654.2
Research Article metrics
Revised
Investigating a novel multiplex proteomics technology for detection of changes in serum protein concentrations that may correlate to tumor burden
[version 2; peer review: 2 approved]
Annie He Ren, Ioannis Prassas, Antoninus Soosaipillai, Stephanie Jarvi, Steven Gallinger, Vathany Kulasingam, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Anna E Lokshin
  • Funder
  • Mount Sinai Hospital
LATEST VERSION PUBLISHED 13 Nov 2020
https://doi.org/10.12688/f1000research.22541.1
Research Article metrics
Use of 16s rRNA to identify non-lactose-fermenting bacilli and molecular detection of ESBL resistance genes associated with hospital-acquired infection in Soba University Hospital, Sudan
[version 1; peer review: 1 approved]
Wissam Ahmed Al Hag, Hana Elbadawi, Muzamil Mahdi Abdel Hamid
Peer Reviewers Asim Elnour
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.26930.1
Research Article metrics
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
[version 1; peer review: 3 approved]
Alexis Criscuolo
Peer Reviewers Brian Ondov; Burkhard Morgenstern; Guy Perrière
PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.18134.3
Brief Report metrics RETRACTED
Revised
RETRACTED:  Non-intertwined strands of plasmid DNA contradict the Watson and Crick model of DNA structure
[version 3; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Pawan Kumar
LATEST VERSION PUBLISHED 10 Nov 2020
https://doi.org/10.12688/f1000research.24751.2
Software Tool Article metrics
Revised
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity
[version 2; peer review: 2 approved]
Evan Bolyen, Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp, Darrin Lemmer, Jason W. Sahl, Andrew Sanchez, Chris Holdgraf, Chris Sewell, Aakash G. Choudhury, John Stachurski, Matthew McKay, Anthony Simard, David M. Engelthaler, Michael Worobey, Paul Keim, J. Gregory Caporaso
Peer Reviewers James Hadfield; C. Titus Brown
  • Funders
  • Arizona Board of Regents
  • Alfred P Sloan Foundation
  • National Cancer Institute
  • Australian National University
  • National Science Foundation
  • Chan-Zuckerberg Initiative
LATEST VERSION PUBLISHED 28 Oct 2020
https://doi.org/10.12688/f1000research.26614.1
Research Article metrics
A first draft genome of the Sugarcane borer, Diatraea saccharalis.
[version 1; peer review: 2 approved with reservations]
Lucas Borges dos Santos, João Paulo Gomes Viana, Fabricio José Biasotto Francischini, Sofia Victoria Fogliata, Andrea L. Joyce, Anete Pereira de Souza, María Gabriela Murúa, Steven J. Clough, Maria Imaculada Zucchi
Peer Reviewers Jay Ghurye; Steven M Van Belleghem
  • Funders
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico
  • Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
PUBLISHED 23 Oct 2020
https://doi.org/10.12688/f1000research.25637.2
Method Article metrics
Revised
Inducible TDG knockout models to study epigenetic regulation
[version 2; peer review: 3 approved]
Simon D. Schwarz, Eliane Grundbacher, Alexandra M. Hrovat, Jianming Xu, Anna Kuśnierczyk, Cathrine B. Vågbø, Primo Schär, David Schuermann
Peer Reviewers Jonathan Sczepanski; Joseph Torchia; Sebastian Bultmann
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 19 Oct 2020
https://doi.org/10.12688/f1000research.19341.4
Research Article metrics
Revised
The diversity of Anopheles blood feeding patterns suggests different malaria protection strategies in different localities
[version 4; peer review: 2 approved]
Irfanul Chakim, Tepanata Pumpaibool
Peer Reviewers Giles E. Duffield; Shüné V. Oliver
  • Funder
  • Rachadapisek Somphot Fund
LATEST VERSION PUBLISHED 19 Oct 2020
https://doi.org/10.12688/f1000research.24887.1
Opinion Article metrics
The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research
[version 1; peer review: 2 approved]
David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutierrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquin Dopazo, Laura I. Furlong, Bo Gao, Leyla Garcia, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskošek, David Lloyd, Tomas Marques-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud
Peer Reviewers Antonio Rausell; Andrew Lonie
  • Funder
  • ELIXIR Hub
PUBLISHED 13 Oct 2020
https://doi.org/10.12688/f1000research.27157.1
Review metrics
Climate change is a major stressor causing poor pregnancy outcomes and child development
[version 1; peer review: 3 approved]
David M. Olson, Gerlinde A.S. Metz
Peer Reviewers Katie Hayes; Lindsay Galway; Kevin Chan
  • Funder
  • Canadian Institutes of Health Research
PUBLISHED 09 Oct 2020
https://doi.org/10.12688/f1000research.25274.1
Method Article metrics
Non-invasive somatotransgenic bioimaging in living animals
[version 1; peer review: 3 approved with reservations]
Juliette M. Delhove, Rajvinder Karda, Lorna M. FitzPatrick, Suzanne M.K. Buckley, Simon N. Waddington, Tristan R. McKay
Peer Reviewers Tingting Xu; Antonius Plagge; Felicity Gavins
  • Funders
  • National Centre for the Replacement, Refinement and Reduction of Animals in Research
  • European Research Council
  • Medical Research Council
PUBLISHED 09 Oct 2020
https://doi.org/10.12688/f1000research.24427.1
Research Article metrics
Annotation and curation of human genomic variations: an ELIXIR Implementation Study
[version 1; peer review: 2 approved with reservations]
Alessia David, Valérie Barbié, Marcella Attimonelli, Roberto Preste, Enni Makkonen, Heidi Marjonen, Mats Lindstedt, Kati Kristiansson, Sarah E. Hunt, Fiona Cunningham, Ilkka Lappalainen, Michael J.E. Sternberg
Peer Reviewers Lina Ma; Osamu Ogasawara
  • Funders
  • ELIXIR
  • Imperial College London
  • European Molecular Biology Laboratory
PUBLISHED 08 Oct 2020
https://doi.org/10.12688/f1000research.23185.2
Review metrics
Revised
Gene editing in dermatology: Harnessing CRISPR for the treatment of cutaneous disease
[version 2; peer review: 2 approved]
Catherine Baker, Matthew S. Hayden
Peer Reviewers Bindu Hegde; Jillian Richmond
  • Funders
  • Hitchcock Foundation
  • American Skin Association
LATEST VERSION PUBLISHED 07 Oct 2020
281-300 of 2,038 ARTICLES
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