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https://doi.org/10.12688/f1000research.13396.2
Antibody Validation Article metrics
Revised
Validation of a yeast malate dehydrogenase 2 (Mdh2) antibody tested for use in western blots
[version 2; peer review: 2 approved]
Shiran Gabay-Maskit, Maya Schuldiner, Einat Zalckvar
Peer Reviewers Andreas Hartig; Ewald H Hettema
  • Funders
  • European Research Council
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 30 Jul 2018
https://doi.org/10.12688/f1000research.15127.1
Research Article metrics
The effect of aerobic exercise on relative leukocyte telomere length in male Sprague-Dawley rats given a high fat-diet
[version 1; peer review: 2 approved with reservations]
Dewi Irawati Soeria Santoso, Nurul Paramita, Ani Retno Prijanti, Thressia Hendrawan, Swandito Wicaksono
Peer Reviewers Ronny Lesmana and Hanna Goenawan; Andrew T. Ludlow
  • Funder
  • Hibah Publikasi Internasional Terindeks untuk Tugas Akhir
PUBLISHED 27 Jul 2018
https://doi.org/10.12688/f1000research.15316.1
Research Article metrics
Molecular characterization of Pseudomonas aeruginosa isolates from Sudanese patients: A cross-sectional study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Reem H. Amoon, Amna H. Abdallha, Ahmed Osman Sharif, Ehssan H. Moglad, Hisham N. Altyb, Salaheldein G. Elzaki, Mohamed A. Salih
Peer Reviewers Giuseppe Comi; Juan Alfonso Ayala Serrano
PUBLISHED 25 Jul 2018
https://doi.org/10.12688/f1000research.14634.1
Review metrics
Genetics and epigenetics of pediatric leukemia in the era of precision medicine
[version 1; peer review: 2 approved]
Kristie N Ramos, Irma N Ramos, Yi Zeng, Kenneth S Ramos
Peer Reviewers Sinisa Dovat; Brian J P Huntly
  • Funder
  • University of Arizona Health Sciences
PUBLISHED 18 Jul 2018
https://doi.org/10.12688/f1000research.15239.1
Review metrics
GSK-3β, a double-edged sword in Nrf2 regulation: Implications for neurological dysfunction and disease
[version 1; peer review: 2 approved]
Megan Culbreth, Michael Aschner
Peer Reviewers Masatake Fujimura; Alexey Tinkov
  • Funder
  • National Institutes of Health
PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.13511.3
Method Article metrics
Revised
netSmooth: Network-smoothing based imputation for single cell RNA-seq
[version 3; peer review: 2 approved]
Jonathan Ronen, Altuna Akalin
Peer Reviewers Fernando J. Calero-Nieto and Fiona Kathryn Hamey; Siddharth Dey
  • Funder
  • Helmholtz-Gemeinschaft
LATEST VERSION PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.13368.1
Research Article metrics
Absence of the CHEK2 c.1100delC mutation in familial breast and ovarian cancer in Colombia: a case-control study
[version 1; peer review: 2 approved with reservations]
Ana-Lucia Rivera-Herrera, Laura Cifuentes-C, JA Gil-Vera, Guillermo Barreto
Peer Reviewers Taru A. Muranen; Fernanda S. Jalil and Angela R. Solano
  • Funders
  • Departamento Administrativo de Ciencia, Tecnología e Innovación
  • Universidad del Valle
PUBLISHED 09 Jul 2018
https://doi.org/10.12688/f1000research.14612.2
Software Tool Article metrics
Revised
eXamine: Visualizing annotated networks in Cytoscape
[version 2; peer review: 4 approved]
Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Peer Reviewers Barry Demchak; Richa Batra; Markus List; Alexander Pico
LATEST VERSION PUBLISHED 05 Jul 2018
https://doi.org/10.12688/f1000research.8967.2
Research Article metrics
Revised
An end to end workflow for differential gene expression using Affymetrix microarrays
[version 2; peer review: 2 approved]
Bernd Klaus, Stefanie Reisenauer
Peer Reviewers James W. MacDonald; Andrea Rau
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.10411.2
Software Tool Article metrics
Revised
A Bioconductor workflow for processing and analysing spatial proteomics data
[version 2; peer review: 2 approved]
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Peer Reviewers Leonard J. Foster; Daniel J. Stekhoven
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.14566.2
Research Article metrics
Revised
Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes.
[version 2; peer review: 2 approved]
Granger G. Sutton, Lauren M. Brinkac, Thomas H. Clarke, Derrick E. Fouts
Peer Reviewers Mark J. Pallen; Trinad Chakraborty and Swapnil Doijad
  • Funders
  • U.S. Department of Health and Human Services
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 Jun 2018
https://doi.org/10.12688/f1000research.14233.1
Review metrics
One Environmental Health: an emerging perspective in toxicology
[version 1; peer review: 2 approved]
Adam Pérez , John Pierce Wise Sr.
Peer Reviewers Jessica Reiner; Michael Carvan
  • Funder
  • NIH
PUBLISHED 27 Jun 2018
https://doi.org/10.12688/f1000research.13062.2
Research Article metrics
Revised
Transcriptional responses of Anopheles gambiae s.s mosquito larvae to chronic exposure of cadmium heavy metal
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Catherine N. Muturi, Martin K. Rono, Daniel K. Masiga, Francis N. Wachira, Richard Ochieng, Paul O. Mireji
Peer Reviewers David Essumang; Shüné V. Oliver; Dick Roelofs
  • Funders
  • Deutscher Akademischer Austauschdienst
  • Egerton University
LATEST VERSION PUBLISHED 25 Jun 2018
https://doi.org/10.12688/f1000research.14298.2
Software Tool Article metrics
Revised
Comparing protein structures with RINspector automation in Cytoscape
[version 2; peer review: 3 approved]
Guillaume Brysbaert, Théo Mauri, Marc F. Lensink
Peer Reviewers Sjoerd J. de Vries; Turkan Haliloglu and Ezgi Karaca; Rita Casadio
LATEST VERSION PUBLISHED 22 Jun 2018
https://doi.org/10.12688/f1000research.12093.2
Software Tool Article metrics
Revised
bcbioRNASeq: R package for bcbio RNA-seq analysis
[version 2; peer review: 1 approved, 1 approved with reservations]
Michael J. Steinbaugh, Lorena Pantano, Rory D. Kirchner, Victor Barrera, Brad A. Chapman, Mary E. Piper, Meeta Mistry, Radhika S. Khetani, Kayleigh D. Rutherford, Oliver Hofmann, John N. Hutchinson, Shannan Ho Sui
Peer Reviewers Charlotte Soneson; Davide Risso
LATEST VERSION PUBLISHED 20 Jun 2018
https://doi.org/10.12688/f1000research.15355.1
Editorial metrics NOT PEER REVIEWED
The Cytoscape Automation app article collection
[version 1; peer review: not peer reviewed]
Barry Demchak, David Otasek, Alexander R Pico, Gary D Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H Morris, William Longabaugh, Christian Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker
  • Funders
  • National Resource for Network Biology
  • National Institute of General Medical Sciences
PUBLISHED 20 Jun 2018
https://doi.org/10.12688/f1000research.13934.2
Software Tool Article metrics
Revised
shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data
[version 2; peer review: 2 approved]
Bhakti Dwivedi, Jeanne Kowalski
Peer Reviewers Yun Zhang; Younghee Lee
  • Funders
  • Winship Cancer Institute of Emory University
  • National Cancer Institute
  • Georgia Research Alliance
LATEST VERSION PUBLISHED 15 Jun 2018
https://doi.org/10.12688/f1000research.14048.2
Research Article metrics
Revised
Predicting ionizing radiation exposure using biochemically-inspired genomic machine learning
[version 2; peer review: 3 approved]
Jonathan Z.L. Zhao, Eliseos J. Mucaki, Peter K. Rogan
Peer Reviewers Daniel Oh; Michael D. Story and Liang-hao Ding; Roel Quintens and Mohamed Mysara
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Canada Excellence Research Chairs, Government of Canada
  • CytoGnomix Inc.
  • Canadian Foundation for Innovation
LATEST VERSION PUBLISHED 15 Jun 2018
https://doi.org/10.12688/f1000research.14966.1
Software Tool Article metrics
iSEE: Interactive SummarizedExperiment Explorer
[version 1; peer review: 3 approved]
Kevin Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T.L. Lun
Peer Reviewers James W. MacDonald; Lorena Pantano; Alejandro Reyes
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Cancer Research UK
PUBLISHED 14 Jun 2018
https://doi.org/10.12688/f1000research.13980.1
Review metrics
Recent advances in the detection of repeat expansions with short-read next-generation sequencing
[version 1; peer review: 3 approved]
Melanie Bahlo, Mark F Bennett, Peter Degorski, Rick M Tankard, Martin B Delatycki, Paul J Lockhart
Peer Reviewers Tetsuo Ashizawa; Samuel S Chong; Sergei Mirkin
  • Funders
  • NHMRC Senior Research Fellowship
  • NHMRC Program Grant
  • Victorian Government’s Operational Infrastructure Support Program
  • Australian Government NHMRC IRIIS
PUBLISHED 13 Jun 2018
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