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https://doi.org/10.12688/f1000research.15144.2
Software Tool Article metrics
Revised
Copycat Layout: Network layout alignment via Cytoscape Automation
[version 2; peer review: 2 approved]
Brett Settle, David Otasek, John H Morris, Barry Demchak
Peer Reviewers Bernhard Mlecnik; Katja Luck
  • Funders
  • National Resource for Network Biology
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 10 Aug 2018
https://doi.org/10.12688/f1000research.13441.2
Brief Report metrics
Revised
DNA sequence features in the establishing of H3K27ac
[version 2; peer review: 2 approved]
Anatoliy Zubritskiy, Yulia A. Medvedeva
Peer Reviewers Vasily N Aushev; Oleg Gusev
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 Aug 2018
https://doi.org/10.12688/f1000research.9973.2
Software Tool Article metrics
Revised
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
[version 2; peer review: 2 approved, 1 approved with reservations]
Andrea Komljenovic, Julien Roux, Julien Wollbrett, Marc Robinson-Rechavi, Frederic B. Bastian
Peer Reviewers Virag Sharma; Daniel S. Himmelstein; Leonardo Collado-Torres
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 07 Aug 2018
https://doi.org/10.12688/f1000research.14807.2
Software Tool Article metrics
Revised
Identifier Mapping in Cytoscape
[version 2; peer review: 3 approved]
Adam Treister, Alexander R. Pico
Peer Reviewers Ruth Isserlin; Augustin Luna; Nadezhda Doncheva
  • Funder
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 06 Aug 2018
https://doi.org/10.12688/f1000research.11146.2
Research Article metrics
Revised
De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing
[version 2; peer review: 2 approved, 2 approved with reservations]
Michael Liem, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J.L.F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, Herman P. Spaink
Peer Reviewers Mile Šikić; Jean-Marc Aury and Benjamin Istace; Christina A. Cuomo; Hayan Lee
LATEST VERSION PUBLISHED 03 Aug 2018
https://doi.org/10.12688/f1000research.15604.1
Research Article metrics
Androgen-dependent alternative mRNA isoform expression in prostate cancer cells
[version 1; peer review: 3 approved]
Jennifer Munkley, Teresa M. Maia, Nekane Ibarluzea, Karen E. Livermore, Daniel Vodak, Ingrid Ehrmann, Katherine James, Prabhakar Rajan, Nuno L. Barbosa-Morais, David J. Elliott
Peer Reviewers Sebastian Oltean; Cyril F. Bourgeois; Jennifer Byrne
  • Funder
  • Prostate Cancer UK
PUBLISHED 03 Aug 2018
https://doi.org/10.12688/f1000research.14499.1
Review metrics
Recent advances in prostate cancer research: large-scale genomic analyses reveal novel driver mutations and DNA repair defects
[version 1; peer review: 2 approved]
Sander Frank, Peter Nelson, Valeri Vasioukhin
Peer Reviewers Emmanuel S Antonarakis; Christopher E Barbieri
  • Funder
  • National Institutes of Health
PUBLISHED 02 Aug 2018
https://doi.org/10.12688/f1000research.15357.1
Method Article metrics
To select relevant features for longitudinal gene expression data by extending a pathway analysis method
[version 1; peer review: 2 approved, 1 approved with reservations]
Suyan Tian, Chi Wang, Howard H. Chang
Peer Reviewers Hulin Wu; Shengping Yang; Irina Dinu
  • Funder
  • National Natural Science Foundation of China
PUBLISHED 31 Jul 2018
https://doi.org/10.12688/f1000research.13396.2
Antibody Validation Article metrics
Revised
Validation of a yeast malate dehydrogenase 2 (Mdh2) antibody tested for use in western blots
[version 2; peer review: 2 approved]
Shiran Gabay-Maskit, Maya Schuldiner, Einat Zalckvar
Peer Reviewers Andreas Hartig; Ewald H Hettema
  • Funders
  • European Research Council
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 30 Jul 2018
https://doi.org/10.12688/f1000research.15127.1
Research Article metrics
The effect of aerobic exercise on relative leukocyte telomere length in male Sprague-Dawley rats given a high fat-diet
[version 1; peer review: 2 approved with reservations]
Dewi Irawati Soeria Santoso, Nurul Paramita, Ani Retno Prijanti, Thressia Hendrawan, Swandito Wicaksono
Peer Reviewers Ronny Lesmana and Hanna Goenawan; Andrew T. Ludlow
  • Funder
  • Hibah Publikasi Internasional Terindeks untuk Tugas Akhir
PUBLISHED 27 Jul 2018
https://doi.org/10.12688/f1000research.15316.1
Research Article metrics
Molecular characterization of Pseudomonas aeruginosa isolates from Sudanese patients: A cross-sectional study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Reem H. Amoon, Amna H. Abdallha, Ahmed Osman Sharif, Ehssan H. Moglad, Hisham N. Altyb, Salaheldein G. Elzaki, Mohamed A. Salih
Peer Reviewers Giuseppe Comi; Juan Alfonso Ayala Serrano
PUBLISHED 25 Jul 2018
https://doi.org/10.12688/f1000research.14634.1
Review metrics
Genetics and epigenetics of pediatric leukemia in the era of precision medicine
[version 1; peer review: 2 approved]
Kristie N Ramos, Irma N Ramos, Yi Zeng, Kenneth S Ramos
Peer Reviewers Sinisa Dovat; Brian J P Huntly
  • Funder
  • University of Arizona Health Sciences
PUBLISHED 18 Jul 2018
https://doi.org/10.12688/f1000research.15239.1
Review metrics
GSK-3β, a double-edged sword in Nrf2 regulation: Implications for neurological dysfunction and disease
[version 1; peer review: 2 approved]
Megan Culbreth, Michael Aschner
Peer Reviewers Masatake Fujimura; Alexey Tinkov
  • Funder
  • National Institutes of Health
PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.13511.3
Method Article metrics
Revised
netSmooth: Network-smoothing based imputation for single cell RNA-seq
[version 3; peer review: 2 approved]
Jonathan Ronen, Altuna Akalin
Peer Reviewers Fernando J. Calero-Nieto and Fiona Kathryn Hamey; Siddharth Dey
  • Funder
  • Helmholtz-Gemeinschaft
LATEST VERSION PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.13368.1
Research Article metrics
Absence of the CHEK2 c.1100delC mutation in familial breast and ovarian cancer in Colombia: a case-control study
[version 1; peer review: 2 approved with reservations]
Ana-Lucia Rivera-Herrera, Laura Cifuentes-C, JA Gil-Vera, Guillermo Barreto
Peer Reviewers Taru A. Muranen; Fernanda S. Jalil and Angela R. Solano
  • Funders
  • Departamento Administrativo de Ciencia, Tecnología e Innovación
  • Universidad del Valle
PUBLISHED 09 Jul 2018
https://doi.org/10.12688/f1000research.14612.2
Software Tool Article metrics
Revised
eXamine: Visualizing annotated networks in Cytoscape
[version 2; peer review: 4 approved]
Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Peer Reviewers Barry Demchak; Richa Batra; Markus List; Alexander Pico
LATEST VERSION PUBLISHED 05 Jul 2018
https://doi.org/10.12688/f1000research.8967.2
Research Article metrics
Revised
An end to end workflow for differential gene expression using Affymetrix microarrays
[version 2; peer review: 2 approved]
Bernd Klaus, Stefanie Reisenauer
Peer Reviewers James W. MacDonald; Andrea Rau
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.10411.2
Software Tool Article metrics
Revised
A Bioconductor workflow for processing and analysing spatial proteomics data
[version 2; peer review: 2 approved]
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Peer Reviewers Leonard J. Foster; Daniel J. Stekhoven
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.14566.2
Research Article metrics
Revised
Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes.
[version 2; peer review: 2 approved]
Granger G. Sutton, Lauren M. Brinkac, Thomas H. Clarke, Derrick E. Fouts
Peer Reviewers Mark J. Pallen; Trinad Chakraborty and Swapnil Doijad
  • Funders
  • U.S. Department of Health and Human Services
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 Jun 2018
https://doi.org/10.12688/f1000research.14233.1
Review metrics
One Environmental Health: an emerging perspective in toxicology
[version 1; peer review: 2 approved]
Adam Pérez , John Pierce Wise Sr.
Peer Reviewers Jessica Reiner; Michael Carvan
  • Funder
  • NIH
PUBLISHED 27 Jun 2018
281-300 of 644 ARTICLES
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