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https://doi.org/10.12688/f1000research.108667.2
Review metrics
Revised
COVID-19, Cation Dysmetabolism, Sialic Acid, CD147, ACE2, Viroporins, Hepcidin and Ferroptosis: A Possible Unifying Hypothesis
[version 2; peer review: 2 approved]
Attilio Cavezzi, Roberto Menicagli, Emidio Troiani, Salvatore Corrao
Peer Reviewers Ming Yang; Piotr H. Pawlowski
LATEST VERSION PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.23790.2
Method Article metrics
Revised
How to build phylogenetic species trees with OMA
[version 2; peer review: 2 approved]
David Dylus, Yannis Nevers, Adrian M. Altenhoff, Antoine Gürtler, Christophe Dessimoz, Natasha M. Glover
Peer Reviewers Jianbo Xie; Denis Baurain
  • Funders
  • Swiss National Science Foundation
  • Swiss Institute of Bioinformatics
LATEST VERSION PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.109251.1
Brief Report metrics
Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing
[version 1; peer review: 2 approved]
Andrew W. Liu, Alejandro Villar-Briones, Nicholas M. Luscombe, Charles Plessy
Peer Reviewers Genki N. Kanda; Shan Wei
  • Funder
  • Japan Society for the Promotion of Science
PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.94159.1
Software Tool Article metrics
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.108415.1
Genome Note metrics
The complete mitogenome sequence of clam (Corbicula fluminea)
[version 1; peer review: 1 approved, 1 approved with reservations]
Qing Luo, Jie Pi, Yangxin Tang, Cong Zeng, Deliang Li
Peer Reviewers Xiaotong Wang; Arsalan Emami-Khoyi
  • Funders
  • Hunan Provincial Modern Agricultural Research System
  • National Natural Science Foundation of China
  • Hunan Provincial Scientific and Technological Program
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.75318.1
Research Article metrics
Association between S-COMT activity and impulsive and premeditated aggression in a population of violent offenders: preliminary results of a cross sectional study
[version 1; peer review: 1 approved, 1 not approved]
Jacinto Azevedo, Cláudia Carvalho, Maria Paula Serrão, Rui Coelho, Maria Augusta Vieira-Coelho, Margarida Figueiredo-Braga
Peer Reviewers Elias Abdalla-Filho; Mujgan Cengiz and Efruz İrem Akkuş-Yaylamış
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.28352.2
Method Article metrics
Revised
Methods for sequencing the pandemic: benefits of rapid or high-throughput processing
[version 2; peer review: 2 approved]
Megan L. Folkerts, Darrin Lemmer, Ashlyn Pfeiffer, Danielle Vasquez, Chris French, Amber Jones, Marjorie Nguyen, Brendan Larsen, W. Tanner Porter, Krystal Sheridan, Jolene R. Bowers, David M. Engelthaler
Peer Reviewers Bronwyn MacInnis; Keith Crandall
  • Funders
  • Arizona Department of Health Services
  • The NARBHA institute
LATEST VERSION PUBLISHED 21 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.74041.2
Research Article metrics
Revised
Rice husk and melaleuca biochar additions reduce soil CH4 and N2O emissions and increase soil physicochemical properties
[version 2; peer review: 2 approved]
Nam Tran Sy, Thao Huynh Van, Nguyen Huu Chiem, Cong Nguyen Van, Tarao Mitsunori
Peer Reviewers Azeem Tariq; Bui Truong Tho
  • Funder
  • This study was funded by the Can Tho University Improvement Project VN14-P6, Japanese ODA loan. The authors declare no competing financial interests.
LATEST VERSION PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.27763.2
Brief Report metrics
Revised
Runcer-Necromancer: a method to rescue data from an interrupted run on MGISEQ-2000
[version 2; peer review: 1 approved, 1 approved with reservations]
Anna Pavlova, Vera Belova, Robert Afasizhev, Irina Bulusheva, Denis Rebrikov, Dmitriy Korostin
Peer Reviewers Simon Andrews; Sergey Knyazev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.52152.2
Research Article metrics
Revised
Students’ perception of online learning amidst the Covid-19 pandemic: A study of junior, senior high school and college students in a remote area
[version 2; peer review: 2 approved]
Senida Harefa, Grace Lamudur Arta Sihombing
Peer Reviewers Xuesong Gao; Reza Rachmadtullah
  • Funder
  • Institut Agama Kristen Negeri Tarutung
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.108496.1
Research Article metrics
Effect of microfluidic rectangular microelectrode geometry on bioparticles manipulation in dielectrophoretic application
[version 1; peer review: 4 approved with reservations]
Zuriel Da En Shee, Ervina Efzan Binti Mhd Noor, Aminuddin Bin Ahmad Kayani, Noor Ziela Binti Abd Rahman
Peer Reviewers Reda Abdelbaset; Mengren Wu; Adil Mustafa; Karina Torres-Castro
  • Funder
  • Ministry of Higher Education, Malaysia
PUBLISHED 11 Feb 2022
https://doi.org/10.12688/f1000research.26550.2
Research Article metrics
Revised
A novel genotyping method to determine copy number in a mouse line commonly used for inducible transgene expression in brain and spinal cord
[version 2; peer review: 1 approved, 2 approved with reservations]
Eleanor Hobbs, Sarah Ryan, Sara Rollinson, Stuart Allan, Stuart Pickering-Brown
Peer Reviewers Virginia Lee and Mandana Hunter; Keiichi Ishihara; Sandy S. Pineda
  • Funders
  • Medical Research Council
  • Motor Neurone Disease Association
LATEST VERSION PUBLISHED 10 Feb 2022
https://doi.org/10.12688/f1000research.74570.2
Review metrics
Revised
Contribution of BCR-ABL molecular variants and leukemic stem cells in response and resistance to tyrosine kinase inhibitors: a review
[version 2; peer review: 2 approved]
Mohammad Al Hamad
Peer Reviewers Ala-Eddin Al Moustafa; Pinar Arslan
LATEST VERSION PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.107925.1
Software Tool Article metrics
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks
[version 1; peer review: 2 approved]
Jefferson Daniel Suquilanda-Pesántez, Evelyn Dayana Aguiar Salazar, Diego Almeida-Galárraga, Graciela Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño Gomezjurado
Peer Reviewers Juan Onofre Orozco-López; Lorena Isabel Barona López
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.26452.1
Software Tool Article metrics
Lessons learned in virulence factor identification and data management from a hackathon on microbial virulence
[version 1; peer review: 1 approved, 1 approved with reservations]
Brett E. Pickett, Ryan Connor, Tamiru Berhanu-Denka, Sherry Bhalla, Vyacheslav Brover, Michael James Chambers, Kumardeep Chaudhary, Ousmane H. Cissé, Allissa Dillman, Moamen M. Elmassry, Michael Feldgarden, Eric Holloway, Xin Huang, William Klimke, Catarina Inês Mendes, S. Elizabeth Norred, Jonathan Parkinson, Samantha Sevilla, Monica Garcia Solache, Defne Surujon, Udana Torian, Vadim Zalunin, Ben Busby
Peer Reviewers Rick Stevens and James Davis; Kevin Tyler
  • Funders
  • Fundação para a Ciência e a Tecnologia
  • Scientific and Technological Research Council of Turkey
  • Intramural Research Program of the National Library of Medicine
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.28225.2
Research Article metrics
Revised
Human Proteinase 3, an important autoantigen of c-ANCA associated vasculitis, shares cross-reactive epitopes with serine protease allergens from mites: an in silico analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Emiro Buendía, Múnera Marlon, Orlando Parra, María Sánchez, Andrés Sánchez, Jorge Sánchez, Diego Viasus
Peer Reviewers Chandrabose Selvaraj; Tomas Erban; Hiroshi Tanaka
  • Funder
  • Fondo Nacional de Financiamiento para la Ciencia, la Tecnología y la Innovación
LATEST VERSION PUBLISHED 03 Feb 2022
https://doi.org/10.12688/f1000research.75856.1
Review metrics
Food supplements to complement brain functioning: the benefits of a combination of magnesium, folic acid, omega-3 fatty acids and vitamin E
[version 1; peer review: 1 approved]
Rita Businaro
Peer Reviewers Ned D Heindel
  • Funder
  • Unconditioned grant from Angelini Pharma S.p.A., Rome, Italy (for editorial assistance)
PUBLISHED 03 Feb 2022
https://doi.org/10.12688/f1000research.72808.2
Research Article metrics
Revised
Student biocuration projects as a learning environment
[version 2; peer review: 2 approved]
Katherine E. Thurlow, Ruth C. Lovering, Sandra De Miranda Pinheiro
Peer Reviewers Nicole A. Vasilevsky; Anna Delprato
  • Funders
  • National Institute for Health Research University College London Hospitals Biomedical Research Centre
  • Alzheimer’s Research UK
LATEST VERSION PUBLISHED 02 Feb 2022
https://doi.org/10.12688/f1000research.79530.1
Software Tool Article metrics
bit: a multipurpose collection of bioinformatics tools
[version 1; peer review: 2 not approved]
Michael Lee
Peer Reviewers Kai Zhang; Georges Hattab
PUBLISHED 31 Jan 2022
901-920 of 4,600 ARTICLES
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