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https://doi.org/10.12688/f1000research.124121.4
Research Article metrics
Revised
Evaluation of antimicrobial susceptibility of Escherichia coli isolated from contaminated areas of Majengo slum in Meru County, Kenya
[version 4; peer review: 2 approved, 3 approved with reservations, 2 not approved]
Jared Ombuya, Kennedy Gachoka, Kagendo Dorothy, Naomi Mutea
Peer Reviewers Eman S. Ibrahim; Benno H Ter Kuile; Md. Abdus Sobur; Abdennaceur Hassen; Chimdi Mang Kalu; K.B.M Saiful Islam; Mulugeta Kibret
LATEST VERSION PUBLISHED 13 Nov 2025
https://doi.org/10.12688/f1000research.158144.2
Research Article metrics
Revised
Evaluation of Pre-Extraction Knowledge and Perception of the Third Molar Extraction Procedure Among Patients in the Eastern Province, Saudi Arabia: A Cross-Sectional Study
[version 2; peer review: 1 approved with reservations, 1 not approved]
Sami Alshehri, Turki Alshehri, Hadeel AlMutiri, Abdulla Aljami, Ahmed Alsubaie, Faisal E. Aljofi, Mishali AlSharief, Manal AlSaadoun, Yasser S. Alali, Yousif A. Al-Dulaijan
Peer Reviewers Ahmed Fadhel Al-Quisi; Brender Leonan-Silva
  • Funder
  • no fund received
LATEST VERSION PUBLISHED 11 Nov 2025
https://doi.org/10.12688/f1000research.166849.2
Genome Note metrics
Revised
Reference-guided draft genome assembly of the slender walking catfish, Prophagorus nieuhofii
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Imron Imron, Fajar Anggraeni, Rahmat Hidayat, Jadmiko Darmawan, Otong Zenal Arifin, Daniel Frikli Mokodongan, Rosita Rosita, Luthfi Nurhidayat
Peer Reviewers Gulab D. Khedkar; Geoffrey C. Waldbieser; Haiyang Liu; Adauto Cardoso
  • Funder
  • Lembaga Pengelola Dana Pendidikan
LATEST VERSION PUBLISHED 10 Nov 2025
https://doi.org/10.12688/f1000research.165281.1
Software Tool Article metrics
DataMap: A Browser-based App for Visualizing High-Dimensional Data
[version 1; peer review: 1 approved with reservations]
Xijin Ge
Peer Reviewers Guangchuang Yu
  • Funders
  • National Institute of General Medical Sciences
  • National Human Genome Research Institute
PUBLISHED 10 Nov 2025
https://doi.org/10.12688/f1000research.170665.1
Software Tool Article metrics
Sixth Annual BCM Hackathon on Structural Variation and Pangenomics
[version 1; peer review: 2 approved with reservations]
Farhang Jaryani, Bishnu Adhikar, Shaghayegh Beheshti, Sarah Fross, Jędrzej Kubica, Jen-Yu Wang, Aanuoluwa Adekoya, Daniel P. Agustinho, Oluwaseun Akinsulire, Francesco Andreace, Abolhassan Bahari, Christian Brueffer, Siyuan Cheng, Jonah Cullen, Kristen Curry, Ryan Doughty, Adam English, Neda Ghohabi Esfahani, Natali Gulbahce, Tina Han, Nha Van Huynh, Michal Izydorczyk, Minal Jamsandekar, Emrah Kacar, Arthur Shem Kasambula, Rupesh K. Kesharwani, Divya Kalra, Shwetha V Kumar, Iva Kotásková, Callum MacPhillamy, Sina Majidian, Mauricio Moldes, Abraham (Jon) Moller, Rajarshi Mondal, Eleni Mourouzidou, Michael Nute, Dmitrii Olisov, Anika Pallapothu, Meghana Ram, Marcus Chan Hua Rui, Philippe Sanio, Russel T. Santos, Michael Olufemi, Narges SangaraniPour, Moustafa Shokrof, Sam Stroupe, Gobikrishnan Subramaniam, Todd J. Treangen, Pankhuri Wanjari, Umran Yaman, Farha zain, Xinchang Zheng, Fritz J Sedlazeck, Ben Busby
Peer Reviewers Istvan Albert; Colin Diesh
  • Funders
  • Shwetha V Kumar is supported by CPRIT grant #RP210037 (PI Aaron Thrift)
  • Ryan Doughty is supported by a training fellowship from the Gulf Coast Consortia, on the NLM Training Program in Biomedical Informatics & Data Science (T15LM007093)
  • Sarah Fross is supported by a training grant from the National Institutes of Health under Award Number 5T32GM135748-04.
  • Sedlazeck NIH grant: 1UG3NS132105-01, 1U01HG011758-01
  • Jędrzej Kubica is supported by the Ministry of Science and Higher Education (Poland) as a project under the program Excellence Initiative – Research University (2020–2026) (decision no.: IV.2.3./30/2024) and the France 2030 state funding managed by the National Research Agency with the reference
  • Shaghayegh Beheshti is supported by a training grant from the National Institutes of Health under Award Number 5T32GM139534-04 and NHGRI U01 HG011758.
  • The research was supported by Cancer Prevention and Research Institute of Texas under grant number: #RP210037
PUBLISHED 07 Nov 2025
https://doi.org/10.12688/f1000research.171593.1
Research Article metrics AWAITING PEER REVIEW
Analysis of skin mycobiota associated with alopecia in captive cynomolgus macaques (Macaca fascicularis) based on Oxford Nanopore Technologies
[version 1; peer review: awaiting peer review]
Natthanit Phokkhasub, Suthida Visedthorn, Pavit Klomkliew, Prangwalai Chanchaem, Kittima Phutthawong, Taratorn Kemthong, Vorthon Sawaswong, Ariya Khamwut, Suchinda Malaivijitnond, Sunchai Payungporn
Peer Reviewers Invited
  • Funders
  • The 90th Anniversary of Chulalongkorn University Ratchadaphiseksomphot Fund
  • The National Research Council of Thailand (NRCT)
PUBLISHED 07 Nov 2025
https://doi.org/10.12688/f1000research.166678.2
Research Article metrics
Revised
Exploring the Potential of Peptides Derived from the Coelomic Fluid of Echinometra lucunter Targeting Inflammatory Cytokines in Placental Syndromes: In Silico Study
[version 2; peer review: 2 approved]
Defrin Defrin, Arif Birru, Kevin Cuandra, Ratna Puspita, I Widnyana, Nasya Aqilah, Arzita Fadhilla, Winka Suwardjo, Amanda Amalia, Kalaj Haq, Tirza Amaris, Feroz Aldino, Shabrina Ekitasari, Bernice Sirait, Nathania Kristaningtyas, Rizka Wilanda, Made Ananda
Peer Reviewers Aldi Tamara Rahman; Norbertus Marcell Prayogi
LATEST VERSION PUBLISHED 06 Nov 2025
https://doi.org/10.12688/f1000research.171123.1
Research Article metrics
Identification of Pathogenic PKHD1 Variants in Infants with Autosomal Recessive Polycystic Kidney Disease from the Dhofar Region, Oman
[version 1; peer review: 2 approved]
Intisar Al Alawi, Maha Al Awadi, Fatma Al Awaid, Joshua Pillai, Matthew Sampson, Juliana E. Arcila Galvis, Ashwaq Al Maimani, Zainab Al Hashmi, John A. Sayer
Peer Reviewers Hana Yang; Consolato M Sergi
  • Funders
  • Kidney Research UK
  • LifeArc
  • Horizon Europe
  • Medical Research Council
PUBLISHED 05 Nov 2025
https://doi.org/10.12688/f1000research.164618.3
Brief Report metrics
Revised
Gas Chromatography-Mass spectrometry (GC-MS) Revealed Bioactive Constituents of Brassica oleracea var. viridis (Collard Greens) Used to Treat Male Infertility in Uganda.
[version 3; peer review: 1 approved, 2 approved with reservations]
Emmanuel Orire Ikuomola, Daniel Udofia Owu, Victor Otu Oka, Sunday Agba Bisong, Ugwu Okechukwu Paul-Chima, Patrick Maduabuchi Aja
Peer Reviewers Faten Hameed Thamer; Adeoye-Isijola Morenike; Amanulla Khan
LATEST VERSION PUBLISHED 05 Nov 2025
https://doi.org/10.12688/f1000research.155447.2
Review metrics
Revised
Impact of Climate Change on Human Lactation: Biological, Socioeconomic, and Public Health Implications
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Daryl O. Traylor, Winter Cameron, Brianna Clark, Eboni Anderson, Robert Henderson, Lena Clark, Michael Taylor, Cierra Swington
Peer Reviewers Laura J Brown; Cecília Tomori; Pramila Menon
LATEST VERSION PUBLISHED 04 Nov 2025
https://doi.org/10.12688/f1000research.157091.2
Research Article metrics
Revised
Analyzing Aloe vera and Avocado Seed Extracts for Antioxidants, Saponins, Tannins, Flavonoids, and Alkaloids Using the UV-VIS Spectrophotometric Method
[version 2; peer review: 5 approved with reservations]
Nur Ariska Nugrahani, Cecilya Nella Yuppy Anggraeni, Noor Hafida Widyastuti, Mahmud Kholifa
Peer Reviewers Didi Nurhadi Illian; Mona Luciana Gălăţanu; Ahmad Royani; Thi-Van Nguyen; Zehra Tekin
  • Funder
  • None
LATEST VERSION PUBLISHED 04 Nov 2025
https://doi.org/10.12688/f1000research.171468.1
Software Tool Article metrics
DTAShiny: An Interactive R Shiny Application for Diagnostic Test Accuracy Analysis and Visualization
[version 1; peer review: 3 approved with reservations]
Syed Faizaan Shah Quadri, Ahmad Mahmood, Joanne Lac
Peer Reviewers Christos Nakas; Budi Sunaryo; Pedro Castaneda
PUBLISHED 30 Oct 2025
https://doi.org/10.12688/f1000research.153918.1
Genome Note metrics
Chromosome-level genome assembly of the hamour (orange-spotted grouper), Epinephelus coioides
[version 1; peer review: 2 approved, 1 approved with reservations]
Razan Khalifa, Tim Bean, Dana Albatesh, Ronny van Aerle, Zenaba Kahtir, Zainab Hizam, Marta Gut, Francisco Câmara, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Eduarda Santos, Alexandra Leitão, Diana Minardi
Peer Reviewers Jayan Duminda M Senevirathna; Merly Escalona; Karim Gharbi
  • Funders
  • Spanish Government, Ministry of Science, Innovation and Universities and Generalitat de Catalunya through the Departament de Recerca i Universitats and Departament de Salut
  • Qatar National Research Fund
  • Roslin Institute Strategic Programme Award
PUBLISHED 29 Oct 2025
https://doi.org/10.12688/f1000research.170584.1
Research Article metrics
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 1; peer review: 2 approved with reservations]
Alejandra Clavijo-Giraldo, Sandra Uribe Soto, Andrés Gómez-Palacio
Peer Reviewers Renee Ali; Michael J Raupach
  • Funder
  • This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
PUBLISHED 28 Oct 2025
https://doi.org/10.12688/f1000research.170420.1
Review metrics
Advancing FAIR Biodiversity Data: Bioschemas Implementation in NFDI4Biodiversity
[version 1; peer review: 2 approved with reservations, 1 not approved]
Lars Möller, Marcus Ernst, David Fichtmüller, Claas-Thido Pfaff, Stefan Seifert, Naouel Karam, Cornelia Fürstenau, Uwe Schindler, Julius Witte, Christian Ebeling, Lorenz Reimer
Peer Reviewers Mathias Dillen; Sharif Islam; Franck Michel
  • Funder
  • German Research Foundation
PUBLISHED 27 Oct 2025
https://doi.org/10.12688/f1000research.157869.3
Study Protocol metrics
Revised
Comparison of serum vitamin D level and vitamin D receptor gene FokI polymorphism in leprosy patients with and without trophic ulcers: protocol for a case-control study
[version 3; peer review: 3 approved with reservations]
Paulus Anthony Halim, Sondang P. Sirait, Eliza Miranda, Yulia Ariani, Wresti Indriatmi, Hok Bing Thio
Peer Reviewers Khairuddin Djawad; Ravindra Turankar; ANABELL ALVARADO NAVARRO
  • Funder
  • Research and Development, Universitas Indonesia under the Hibah PUTI 2023 scheme
LATEST VERSION PUBLISHED 23 Oct 2025
https://doi.org/10.12688/f1000research.170886.1
Data Note metrics
A guide to selecting high-performing antibodies for Heterogeneous nuclear ribonucleoproteins A2/B1(hnRNP A2/B1) (UniProt ID: P22626) for use in western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 2 approved]
Vera Ruíz Moleón, Riham Ayoubi, Charles Alende, Maryam Fothouhi, Joel Ryan, Sara González Bolívar, Donovan Worrall, Thomas M Durcan, Claire M Brown, Vincent Francis, Peter S McPherson, Carl Laflamme
Peer Reviewers Deborah Moshinsky; Sian E. Evans
  • Funder
  • ALS-Reproducible Antibody Platform (ALS-RAP)
PUBLISHED 23 Oct 2025
https://doi.org/10.12688/f1000research.162353.2
Research Article metrics
Revised
Optimizing Cardiovascular Treatment in Non-Small Cell Lung Cancer: A Comprehensive Computational Approach for Assessment of Drug-Drug Interactions Between Tyrosine Kinase Inhibitors and Cardiovascular Drugs
[version 2; peer review: 2 approved, 1 approved with reservations]
Prajakta Patil, Mrunal Desai, Gayathri Baburaj, Levin Thomas, Viswam Subeesh, Sumit Birangal, Mahadev Rao, Gurupur Gautham Shenoy, Jagadish P. C.
Peer Reviewers Fahrul Nurkolis; Uday Venkat Mateti; Janmejay Pant
LATEST VERSION PUBLISHED 22 Oct 2025
https://doi.org/10.12688/f1000research.171863.1
Genome Note metrics
Draft genome sequence of a predatory bacterium from northern peatland soil
[version 1; peer review: 1 approved with reservations]
Tatiana Demina, Riina Ihonen, Minna K. Männistö, Jenni Hultman
Peer Reviewers Kai Blin and Judit Szenei
  • Funders
  • Research Council of Finland
  • Kone Foundation
PUBLISHED 21 Oct 2025
https://doi.org/10.12688/f1000research.170810.1
Software Tool Article metrics AWAITING PEER REVIEW
DirectRepeateR: An R package for annotating direct repeats in genome assemblies
[version 1; peer review: awaiting peer review]
Megan Copeland, Andres Barboza, Joseph S. Romanowski, Zach N. Adelman, Heath Blackmon
Peer Reviewers Invited
  • Funders
  • National Institute of Allergies and Infectious Diseases, National Institutes of Health
  • National Institute of General Medical Sciences at the National Institutes of Health
PUBLISHED 21 Oct 2025
81-100 of 4,600 ARTICLES
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