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https://doi.org/10.12688/f1000research.140273.3
Research Article metrics
Revised
Predicting gene expression changes upon epigenomic drug treatment
[version 3; peer review: 4 approved, 2 not approved]
Piyush Agrawal, Vishaka Gopalan, Monjura Afrin Rumi, Sridhar Hannenhalli
Peer Reviewers Angelika Merkel; Daiqing Liao and Zhiguang Huo; Sukhen Das Mandal; Indrakant K. Singh; Vivek Dhar Dwivedi; Ashwini Kumar
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 02 May 2025
https://doi.org/10.12688/f1000research.156703.2
Research Article metrics
Revised
Associations Between Factors Affecting Itching and Quality of Life in Thai Patients with Psoriasis: A Cross-Sectional Study
[version 2; peer review: 2 approved, 1 approved with reservations]
Phurichaya Teyateeti, Chanita Autchayawat, Wiriya Mahikul, Rithee Smithrithee
Peer Reviewers Napatra Tovanabutra; Narumol Silpa-archa; Adam Reich
  • Funder
  • Chulabhorn Royal Academy
LATEST VERSION PUBLISHED 25 Apr 2025
https://doi.org/10.12688/f1000research.109236.2
Research Article metrics
Revised
Evidence of SARS-CoV-2 bacteriophage potential in human gut microbiota
[version 2; peer review: 1 approved, 2 approved with reservations]
Mauro Petrillo, Maddalena Querci, Carlo Brogna, Jessica Ponti, Simone Cristoni, Peter V Markov, Andrea Valsesia, Gabriele Leoni, Alessandro Benedetti, Thierry Wiss, Guy Van den Eede
Peer Reviewers M. Anwar Hossain and Md. Shaminur Rahman; Didier Raoult; Zhonghan Sun
  • Funder
  • Joint Research Centre
LATEST VERSION PUBLISHED 23 Apr 2025
https://doi.org/10.12688/f1000research.158264.3
Method Article metrics
Revised
Using text-mining to measure the scientific impact and legacy of ELIXIR, a distributed research infrastructure for life science data
[version 3; peer review: 2 approved, 1 approved with reservations]
Francesca De Leo, Erika Balsyte, Robert Petryszak, Marilena D’Ambrosio, Chiara Bruno, Martin Cook, Ivan Mičetić, Corinne S. Martin
Peer Reviewers Helen M. Berman; Shuichi Kawashima; Alfonso Valencia
  • Funders
  • Italian Ministry for Universities and Research (National Recovery and Resilience Plan M4C2)
  • European Union (Horizon Programmes)
  • ELIXIR, the research infrastructure for life science data
LATEST VERSION PUBLISHED 22 Apr 2025
https://doi.org/10.12688/f1000research.158097.2
Case Report metrics
Revised
Case Report: Case report: Hepatic and  pulmonary echinococcosis with reactivated tuberculosis
[version 2; peer review: 2 approved with reservations, 1 not approved]
Yousif Mohamed, Sohaib Arbab, Ali Mohamed
Peer Reviewers Alin Mihetiu; Ali Bilal Ulas; Zied Chaari
LATEST VERSION PUBLISHED 22 Apr 2025
https://doi.org/10.12688/f1000research.158761.2
Research Article metrics
Revised
Comparative Genomics of Rhamnolipid Synthesis and Monoaromatic Hydrocarbon Tolerance Genes in Environmental Pseudomonas aeruginosa strains
[version 2; peer review: 2 approved]
ROGER A. PALOMINO HUARCAYA, Camila Castillo-Vilcahuaman, Sandro B. Martel-Torres, Fernando A. Merino Rafael, Susana M. Gutiérrez Moreno
Peer Reviewers Andi Kurniawan; Wijdan H Al-tamimi
LATEST VERSION PUBLISHED 17 Apr 2025
https://doi.org/10.12688/f1000research.160308.2
Research Article metrics
Revised
Pre-treatment blood parameters as an economical predictive marker for predicting treatment response in locally advanced cervical cancer
[version 2; peer review: 2 approved]
Abhishek Krishna, Vishnumaya N, Fathima Shada, Pooja MS, Dilson Lobo, Athiyamaan MS, Challapalli Srinivas, Sourjya Banerjee, Johan Sunny, Paul Simon
Peer Reviewers Agapiti H Chuwa; Lanisha Sequeira
LATEST VERSION PUBLISHED 15 Apr 2025
https://doi.org/10.12688/f1000research.162479.1
Clinical Practice Article metrics AWAITING PEER REVIEW
Periosteal distraction technology for stroke recovery: A game changer for neurorehabilitation?
[version 1; peer review: awaiting peer review]
Yi You MD, Jundong Huang MD, Xiangkai Zhou MD, Yan Ma MD, Mingqi Yi MD, Huiyan Liu MD, Jing Luo MD, Fang Wei MD, Wei Shi MD,PhD, Naxin Zeng MD
Peer Reviewers Invited
PUBLISHED 11 Apr 2025
https://doi.org/10.12688/f1000research.150498.1
Case Report metrics
Case Report: Creutzfeldt-Jakob disease and diagnosis challenges: case report and evidence synthesis
[version 1; peer review: 2 approved with reservations]
Virgilio E Failoc Rojas, Yiro Yazawa-Ballena, Gustavo Alvarado-Moreno, Alba Navarro-Flores, Carlos Alva-Diaz, Kevin Pacheco-Barrios
Peer Reviewers Anna Ladogana; Shi-Lin Yang
PUBLISHED 11 Apr 2025
https://doi.org/10.12688/f1000research.163516.1
Method Article metrics
NAD: Noise-augmented direct sequencing of target nucleic acids by augmenting with noise and selective sampling
[version 1; peer review: 1 approved, 1 approved with reservations]
Hyunjin Shim
Peer Reviewers Ruslan Kalendar; Runsheng Li
PUBLISHED 10 Apr 2025
https://doi.org/10.12688/f1000research.130430.3
Data Note metrics
Revised
Cigarette smoke alters circRNA expression in human T-cells
[version 3; peer review: 1 approved, 2 approved with reservations]
So Jin Hong, Zhaohao Liao, Kenneth W. Witwer, Ashley E. Russell
Peer Reviewers Thivanka Muthumalage; Zahraa Rahal; Meity Ardiana
  • Funder
  • National Institute on Drug Abuse
LATEST VERSION PUBLISHED 09 Apr 2025
https://doi.org/10.12688/f1000research.160250.3
Research Article metrics
Revised
Diversity, Distribution, and Phenotypic Characterization of Cultivable Wild Yeasts Isolated from Natural Forest
[version 3; peer review: 2 approved]
Teshome Tadesse, Degife Dese, Anbessa Dabassa, Ketema Bacha
Peer Reviewers Pablo Villarreal; Lydia R Heasley
  • Funder
  • Jimma University
LATEST VERSION PUBLISHED 08 Apr 2025
https://doi.org/10.12688/f1000research.155804.1
Research Article metrics
Red rice bran polyphenols suppress invasive properties of HepG2 cells, possibly through Wnt/β-catenin-mediated EMT reversal
[version 1; peer review: 1 approved]
Nattawan Thaolipo, Worawat Surarit, Pintusorn Hansakul
Peer Reviewers Rizal Maarif Rukmana
  • Funder
  • The Research Fund from the Faculty of Medicine, Thammasat University
PUBLISHED 07 Apr 2025
https://doi.org/10.12688/f1000research.128483.4
Research Article metrics
Revised
Comparison of the antimicrobial reduction effect of photodynamic inactivation with the addition of chlorophyll and curcumin photosensitizer in Aggregatibacter actinomycetemcomitans and Enterococcus faecalis
[version 4; peer review: 4 approved with reservations]
Deny Arifianto, Suryani Dyah Astuti, Sarah Ratri Medyaz, Septia Budi Lestari, Samian Samian, Dezy Zahrotul Istiqomah Nurdin, Dita Ayu Hariyani, Yunus Susilo, Ardiansyah Syahrom
Peer Reviewers Min Wu; Shima Afrasiabi; Chenyu Jiang; Gaetano Isola
  • Funder
  • Grant Support International Collaborative Research Scheme
LATEST VERSION PUBLISHED 04 Apr 2025
https://doi.org/10.12688/f1000research.157875.2
Study Protocol metrics
Revised
Identifying and Assessing Physiological Biomarkers for Food and Energy Intake: A Systematic Review with Meta-Analysis Protocol
[version 2; peer review: 1 approved with reservations]
Jiaying Zhou, Mayue Shi, Mingzhu Cai
Peer Reviewers Faiza Jan Iftikhar
  • Funder
  • Dame Julia Higgins Postdoc Collaborative Research Fund
LATEST VERSION PUBLISHED 03 Apr 2025
https://doi.org/10.12688/f1000research.140887.3
Brief Report metrics
Revised
Camptostemon philippinensis, a new record of endangered mangrove species in the Balikpapan Bay, East Kalimantan, Indonesia
[version 3; peer review: 1 approved, 3 approved with reservations]
Bina Swasta Sitepu, Abdul Razaq Chasani, Mukhlisi Mukhlisi, Tri Atmoko, Burhanuddin Adman, Istiana Prihatini
Peer Reviewers Inocencio E Buot; Rene Rollon; Rahman Rahman; Jhonnel P Villegas
  • Funders
  • National Research and Innovation Agency of Indonesia (Badan Riset dan Inovasi Nasional/BRIN)
  • Pendanaan Ekspedisi dan Eksplorasi/PEE 2022
  • Riset dan Inovasi untuk Indonesia Maju/RIIM 2022
LATEST VERSION PUBLISHED 31 Mar 2025
https://doi.org/10.12688/f1000research.160063.2
Software Tool Article metrics
Revised
mimicINT: A workflow for microbe-host protein interaction inference
[version 2; peer review: 2 approved, 1 approved with reservations]
Sébastien A. Choteau, Kevin Maldonado, Aurélie Bergon, Marceau Cristianini, Mégane Boujeant, Lilian Drets, Christine Brun, Lionel Spinelli, Andreas Zanzoni
Peer Reviewers Ylva Ivarsson; Sobia Idrees; Leandro Simonetti
  • Funders
  • Excellence Initiative of Aix-Marseille University - A*MIDEX
  • Agence Nationale de la Recherche
  • Fondation pour la Recherche Médicale
  • European Union’s Horizon 2020 Research and Innovation Programme
LATEST VERSION PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.162356.1
Research Article metrics
Assessing neuroinflammation in vitro in a microglial model: advancing cannabinoid-based therapeutic insights
[version 1; peer review: 1 approved with reservations]
Jose-Manuel Quintero, Luis-Eduardo Diaz, Rosa Helena Bustos, Marta-Ximena Leon
Peer Reviewers Maurício dos Santos Pereira
  • Funder
  • Universidad de La Sabana
PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.162719.1
Software Tool Article metrics
The EpiFusion Analysis Framework for joint phylodynamic and epidemiological analysis of outbreak characteristics
[version 1; peer review: 2 approved, 1 approved with reservations]
Ciara Judge, Oliver Brady, Sarah Hill
Peer Reviewers Vijaykrishna Dhanasekaran and Ruopeng Xie; Claire Guinat; Leo A Featherstone
  • Funders
  • National Universities of Ireland Denis Phelan Scholarship
  • Medical Research Council
  • Wellcome Trust
  • Bloomsbury Colleges PhD Studentship
PUBLISHED 28 Mar 2025
https://doi.org/10.12688/f1000research.161076.1
Software Tool Article metrics
ShinyCellPlus: an improved ShinyCell application for the interactive visualization of single cell dat
[version 1; peer review: 2 approved with reservations]
Drew Moore, Bryan Granger, Stefano Berto
Peer Reviewers Valdemaras Petrošius; Pierre-Luc Germain
  • Funder
  • National Institute of General Medical Sciences
PUBLISHED 27 Mar 2025
81-100 of 4,523 ARTICLES
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