All Research Articles

81-100 of 2,038 ARTICLES
https://doi.org/10.12688/f1000research.138571.2
Genome Note metrics
Revised
The genome sequence of the critically endangered Kroombit tinkerfrog (Taudactylus pleione)
[version 2; peer review: 3 approved]
Peer Reviewers Natalie Forsdick; Sandra Goutte; Matheus Azambuja
  • Funders
  • Australian Federal Government Bushfire Recovery Scheme
  • Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science
  • NCRIS supported Bioplatforms Australia Threatened Species Initiative
LATEST VERSION PUBLISHED 16 Nov 2023
https://doi.org/10.12688/f1000research.134078.2
Method Article metrics
Revised
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Michael D Morgan; Koen Van den berge; Anna Alemany, Xuan Quy Nguyen and Noëlle Dommann
  • Funders
  • National Health and Medical Research Council
  • Chan Zuckerberg Initiative
  • Medical Research Future Fund
LATEST VERSION PUBLISHED 10 Nov 2023
https://doi.org/10.12688/f1000research.133789.1
Research Article metrics
Butterfly eyespots exhibit unique patterns of open chromatin
[version 1; peer review: 2 approved]
Peer Reviewers Richard ffrench-Constant; Craig Brunetti
  • Funder
  • National Research Foundation Singapore
PUBLISHED 31 Oct 2023
https://doi.org/10.12688/f1000research.130752.2
Review metrics
Revised
Anemonefishes: A model system for evolutionary genomics
[version 2; peer review: 2 approved]
Peer Reviewers Fabio Cortesi; Kerstin Johannesson
  • Funders
  • Okinawa Institute of Science and Technology Graduate University
  • Academia Sinica
LATEST VERSION PUBLISHED 27 Oct 2023
https://doi.org/10.12688/f1000research.122019.2
Research Article metrics
Revised
Observation of SARS-CoV-2 genome characteristics and clinical manifestations within eight family clusters from GH and GK clades in Jakarta, Indonesia
[version 2; peer review: 2 approved with reservations, 2 not approved]
Peer Reviewers So Nakagawa; Serafeim C. Chaintoutis; Pakorn Aiewsakun; Gusti N Mahardika
  • Funder
  • Direktorat Riset and Pengembangan, Universitas Indonesia
LATEST VERSION PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.136986.1
Software Tool Article metrics
CIViCutils: Matching and downstream processing of clinical annotations from CIViC
[version 1; peer review: 4 approved with reservations]
Peer Reviewers Kandarp Joshi; Sayed-Rzgar Hosseini; Obi L. Griffith; Marco Punta and Aurora Maurizio
PUBLISHED 11 Oct 2023
https://doi.org/10.12688/f1000research.140649.1
Review metrics
Tapping into the plasticity of plant architecture for increased stress resilience
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Rumyana Karlova; Adriana Garay Arroyo; Sadikshya Poudel
PUBLISHED 02 Oct 2023
https://doi.org/10.12688/f1000research.23805.2
Brief Report metrics
Revised
Analyses of spike protein from first deposited sequences of SARS-CoV2 from West Bengal, India
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Pawan Kumar Maurya; Jalaj Gupta; Nicolas Cuburu
LATEST VERSION PUBLISHED 27 Sep 2023
https://doi.org/10.12688/f1000research.136385.1
Research Article metrics
Shark and ray genome size estimation: methodological optimization for inclusive and controllable biodiversity genomics
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Jochen Wilhelm; Nancy Saavedra-Sotelo
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • National Institute of Genetics, Japan
  • Ministry of Education, Culture, Sports, Science and Technology, Japan
PUBLISHED 25 Sep 2023
https://doi.org/10.12688/f1000research.127937.2
Genome Note metrics
Revised
Characterization of the Complete Chloroplast Genome of Gaultheria nummularioides D.Don 1825 (Ericaceae)
[version 2; peer review: 2 approved]
Peer Reviewers Xing Huang; Hoang Dang Khoa Do
  • Funders
  • Program Innovative Research Team in Science and Technology in Yunnan Province
  • National Natural Science Foundation of China
  • Scientific Research Fund Project of Yunnan Education Department
LATEST VERSION PUBLISHED 04 Sep 2023
https://doi.org/10.12688/f1000research.128320.3
Research Article metrics
Revised
Concatenated 16S rRNA sequence analysis improves bacterial taxonomy
[version 3; peer review: 2 approved]
Peer Reviewers Siddaramappa Shivakumara; Wellyzar Sjamsuridzal
  • Funder
  • Manipal Academy of Higher Education
LATEST VERSION PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.138618.1
Research Article metrics AWAITING PEER REVIEW
Choice of bead-beater instrument can result in significant differences in the outcome of host-associated microbiome studies
[version 1; peer review: awaiting peer review]
Peer Reviewers Invited
  • Funders
  • Department of Energy Minority Serving Institution Partnership Program (MSIPP)
  • Department of Defense
  • National Energy Technology Laboratory
  • National Science Foundation
PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.135174.1
Genome Note metrics
Complete mitochondrial genome and the phylogenetic position of a new Annelida species belonging to the genus Syllis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Peer Reviewers Yingdong Li; Zhi Wang
  • Funder
  • National Research Foundation
PUBLISHED 31 Aug 2023
https://doi.org/10.12688/f1000research.134705.1
Genome Note metrics
The complete mitochondrial genome sequence of Rikuzen flounder, Dexistes rikuzenius (Jordan & Starks, 1904)
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Euna Jo; Michael W Sandel
  • Funder
  • Korea Institute of Marine Science and Technology promotion
PUBLISHED 07 Aug 2023
https://doi.org/10.12688/f1000research.129050.2
Systematic Review metrics
Revised
Polymorphism studies and candidate genes associated with litter size traits in Indonesian goats. a systematic review
[version 2; peer review: 1 approved, 1 not approved]
Peer Reviewers Mohammadreza Mohammadabadi; Zhanerke Akhatayeva
  • Funder
  • Universitas Airlangga
LATEST VERSION PUBLISHED 01 Aug 2023
https://doi.org/10.12688/f1000research.134814.1
Research Article metrics
Amanita thiersii and Amanita foetens are closely related but genetically and geographically distinct species, leaving the origins of A. thiersii and its range expansion enigmatic
[version 1; peer review: 2 approved with reservations, 1 not approved]
Peer Reviewers Duur K Aanen; Julieta Alvarez Manjarrez; Martin P A Coetzee
  • Funders
  • Mary Herman Rubinstein and the University of Wisconsin-Madison
  • Advanced Opportunity Fellowship from the University of Wisconsin-Madison
  • Department of Botany at the University of Wisconsin-Madison
PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.104368.3
Software Tool Article metrics
Revised
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language
[version 3; peer review: 1 approved, 3 approved with reservations]
Peer Reviewers Lindsay Clark; Stéphane De Mita; Nikolay Oskolkov; Jens Léon and Michael Schneider
  • Funder
  • The Leverhulme Trust
LATEST VERSION PUBLISHED 14 Jul 2023
https://doi.org/10.12688/f1000research.131326.2
Research Article metrics
Revised
Genetic diversity and population structure of Capitulum mitella (Linnaeus, 1767) in Fujian (China) revealed by mtDNA COI sequences
[version 2; peer review: 2 approved]
Peer Reviewers Jun Sun; Alex Nahnson Nehemia
  • Funders
  • The Marine Biological Sample Museum
  • Department of Science and Technology of Fujian Province, China
  • Natural Science Foundation of Xiamen, China
LATEST VERSION PUBLISHED 13 Jul 2023
https://doi.org/10.12688/f1000research.131283.2
Genome Note metrics
Revised
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758
[version 2; peer review: 2 approved]
Peer Reviewers Richard Challis; Cinta Pegueroles
  • Funders
  • Canadian BioGenome Project
  • CanSeq150 program
  • European Union's Horizon 2020 Research and Innovation Programme (Marie Skłodowska-Curie grant agreement)
LATEST VERSION PUBLISHED 27 Jun 2023
https://doi.org/10.12688/f1000research.133935.1
Data Note metrics
Time-resolved small RNA transcriptomics of the ichthyosporean Sphaeroforma arctica
[version 1; peer review: 2 approved]
Peer Reviewers Rafał Milanowski; Arkadiy Garber
  • Funders
  • Norges Forskningsråd
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • H2020 Marie Skłodowska-Curie Actions
PUBLISHED 24 May 2023
81-100 of 2,038 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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