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 in 
https://doi.org/10.12688/f1000research.140134.1
Genome Note metrics
The complete chloroplast genome of Phyllanthus acidus (L.) Skeels (Phyllanthaceae)
[version 1; peer review: 1 approved with reservations]
Hoang Danh Nguyen, Thi Diem Quynh Nguyen, Minh Thiet Vu, Hoang Dang Khoa Do
Peer Reviewers Jessica D. Rey
  • Funder
  • Nguyen Tat Thanh University
PUBLISHED 31 Aug 2023
https://doi.org/10.12688/f1000research.134705.1
Genome Note metrics
The complete mitochondrial genome sequence of Rikuzen flounder, Dexistes rikuzenius (Jordan & Starks, 1904)
[version 1; peer review: 2 approved with reservations]
Jun Young Chae, JinHo Kim, Tae-Wook Kang, Jinkoo Kim, Hyung-Ho Lee, Moo-Sang Kim
Peer Reviewers Euna Jo; Michael W Sandel
  • Funder
  • Korea Institute of Marine Science and Technology promotion
PUBLISHED 07 Aug 2023
https://doi.org/10.12688/f1000research.129050.2
Systematic Review metrics
Revised
Polymorphism studies and candidate genes associated with litter size traits in Indonesian goats. a systematic review
[version 2; peer review: 1 approved, 1 not approved]
Mutasem Abuzahra, Loay Abu Eid, Mustofa Helmi Effendi, Imam Mustofa, Mirni Lamid, Saifur Rehman
Peer Reviewers Mohammadreza Mohammadabadi; Zhanerke Akhatayeva
  • Funder
  • Universitas Airlangga
LATEST VERSION PUBLISHED 01 Aug 2023
https://doi.org/10.12688/f1000research.134814.1
Research Article metrics
Amanita thiersii and Amanita foetens are closely related but genetically and geographically distinct species, leaving the origins of A. thiersii and its range expansion enigmatic
[version 1; peer review: 2 approved with reservations, 1 not approved]
Nora Dunkirk, Yen-Wen Wang, Milton T. Drott, Holly Elmore, Gerardo Robledo, Rodham E. Tulloss, Anne Pringle
Peer Reviewers Duur K Aanen; Julieta Alvarez Manjarrez; Martin P A Coetzee
  • Funders
  • Mary Herman Rubinstein and the University of Wisconsin-Madison
  • Advanced Opportunity Fellowship from the University of Wisconsin-Madison
  • Department of Botany at the University of Wisconsin-Madison
PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.104368.3
Software Tool Article metrics
Revised
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language
[version 3; peer review: 1 approved, 3 approved with reservations]
Alex Mas-Sandoval, Chenyu Jin, Marco Fracassetti, Matteo Fumagalli
Peer Reviewers Lindsay Clark; Stéphane De Mita; Nikolay Oskolkov; Jens Léon and Michael Schneider
  • Funder
  • The Leverhulme Trust
LATEST VERSION PUBLISHED 14 Jul 2023
https://doi.org/10.12688/f1000research.131326.2
Research Article metrics
Revised
Genetic diversity and population structure of Capitulum mitella (Linnaeus, 1767) in Fujian (China) revealed by mtDNA COI sequences
[version 2; peer review: 2 approved]
Rouxin Sun, Zhilan Zhang, Qiong Wu, Peng Xiang, Yanguo Wang, Bingpeng Xing
Peer Reviewers Jun Sun; Alex Nahnson Nehemia
  • Funders
  • The Marine Biological Sample Museum
  • Department of Science and Technology of Fujian Province, China
  • Natural Science Foundation of Xiamen, China
LATEST VERSION PUBLISHED 13 Jul 2023
https://doi.org/10.12688/f1000research.131283.2
Genome Note metrics
Revised
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758
[version 2; peer review: 2 approved]
Glenn Chang, Samantha Jones, Sreeja Leelakumari, Jahanshah Ashkani, Luka Culibrk, Kieran O'Neill, Kane Tse, Dean Cheng, Eric Chuah, Helen McDonald, Heather Kirk, Pawan Pandoh, Sauro Pari, Valeria Angelini, Christopher Kyle, Giorgio Bertorelle, Yongjun Zhao, Andrew Mungall, Richard Moore, Sibelle Vilaça, Steven Jones
Peer Reviewers Richard Challis; Cinta Pegueroles
  • Funders
  • Canadian BioGenome Project
  • CanSeq150 program
  • European Union's Horizon 2020 Research and Innovation Programme (Marie Skłodowska-Curie grant agreement)
LATEST VERSION PUBLISHED 27 Jun 2023
https://doi.org/10.12688/f1000research.133935.1
Data Note metrics
Time-resolved small RNA transcriptomics of the ichthyosporean Sphaeroforma arctica
[version 1; peer review: 2 approved]
Andrej Ondracka, Omaya Dudin, Jon Bråte
Peer Reviewers Rafał Milanowski; Arkadiy Garber
  • Funders
  • Norges Forskningsråd
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • H2020 Marie Skłodowska-Curie Actions
PUBLISHED 24 May 2023
https://doi.org/10.12688/f1000research.127990.2
Genome Note metrics
Revised
Draft genome sequences of three emerging beta-lactamase-producing Escherichia coli in the camel production system in Northern Kenya
[version 2; peer review: 2 approved]
Rachael Gachogo, Irene Karegi, Brian Ogoti, Victor Musyoki, Dino Martins, Frank Onyambu, Joseph Kamau
Peer Reviewers Meenakshi S. Iyer; Janet Midega
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.133270.1
Brief Report metrics
High copy number of multi-drug resistance genes in spent coffee grounds used in organic composting
[version 1; peer review: 1 approved with reservations]
Jinpao Hou, Yuen Ting Chiu, Kit-ling Lam, Ki-ying Kwong, Johnny Hoi-lung Lau, Lawal M. Marafa, Stephen Kwok-wing Tsui, Ian Wing-yin Mo, Ping Lung Chan
Peer Reviewers Tam Tran
  • Funders
  • Hong Kong Metropolitan University
  • Research Grants Council of the Hong Kong Special Administrative Region
PUBLISHED 11 May 2023
https://doi.org/10.12688/f1000research.111995.3
Systematic Review metrics
Revised
The role of genetic factors in microtia: A systematic review
[version 3; peer review: 2 approved with reservations, 1 not approved]
Indri Lakhsmi Putri, Alexandria Stephanie, Rachmaniar Pramanasari, Moshe Kon, Citrawati Dyah Kencono Wungu
Peer Reviewers Walid D. Fakhouri; Isabella Monlleó; Miriam Erandi Reyna-Fabian
LATEST VERSION PUBLISHED 26 Apr 2023
https://doi.org/10.12688/f1000research.53997.2
Research Article metrics
Revised
Comparison of cell size, chlorophyll fluorescence and cadmium (Cd2+) bioaccumulation between wild-type and mutant strains of Chlamydomonas reinhardtii upon exposure to Cd2+
[version 2; peer review: 4 approved with reservations]
Ruby Ynalvez, Hector Gonzalez-Cantu, Erick Vazquez-Cano
Peer Reviewers Jiangxin Wang; Stefan Schmollinger; Beatrycze Nowicka; Chonghua Li
  • Funders
  • Texas Higher Education Coordinating Board (THECB) - Norman Hackerman Advanced Research Program
  • Office of Grants and Sponsored Research, Texas A&M International University
LATEST VERSION PUBLISHED 25 Apr 2023
https://doi.org/10.12688/f1000research.129929.2
Research Article metrics
Revised
Disease association and comparative genomics of compositional bias in human proteins
[version 2; peer review: 2 approved]
Christos E. Kouros, Vasiliki Makri, Christos A. Ouzounis, Anastasia Chasapi
Peer Reviewers Stella Tamana; Gregory Amoutzias
  • Funders
  • European Social Fund
  • European Regional Development Fund
LATEST VERSION PUBLISHED 14 Apr 2023
https://doi.org/10.12688/f1000research.76218.2
Review metrics
Revised
Polygenic Risk Score in African populations: progress and challenges
[version 2; peer review: 2 approved]
Yagoub Adam, Suraju Sadeeq, Judit Kumuthini, Olabode Ajayi, Gordon Wells, Rotimi Solomon, Olubanke Ogunlana, Emmanuel Adetiba, Emeka Iweala, Benedikt Brors, Ezekiel Adebiyi
Peer Reviewers Bingxin Zhao; Cathryn M. Lewis and Michelle Kamp
  • Funders
  • World Bank
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 11 Apr 2023
https://doi.org/10.12688/f1000research.109628.2
Case Report metrics
Revised
Case Report: Identification of likely recurrent CEP290 mutation in a child with Joubert syndrome and cerebello-retinal-renal features.
[version 2; peer review: 2 approved]
Lidvana Spahiu, John A Sayer, Emir Behluli, Thomas Liehr, Gazmend Temaj
Peer Reviewers Muhammad Ansar; Karen I. Lange
  • Funders
  • Kidney Research UK
  • Northern Counties Kidney Research Fund
LATEST VERSION PUBLISHED 31 Mar 2023
https://doi.org/10.12688/f1000research.130734.1
Genome Note metrics
The first genome sequence of Anopheles squamous from Macha, Zambia
[version 1; peer review: 2 approved]
Valerie T. Nguyen, Travis C. Collier, Sangwoo Seok, Xiaodi Wang, Monicah M. Mburu, Limonty Simubali, Mary E. Gebhardt, Douglas E. Norris, Yoosook Lee
Peer Reviewers Megan A. Riddin; Tara Roth
  • Funders
  • Department of Entomology and Nematology, University of Florida
  • University of Florida
  • Johns Hopkins Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health
  • National Institutes of Health
  • College of Agricultural and Life Sciences, University of Florida
  • Bloomberg Philanthropies
PUBLISHED 24 Mar 2023
https://doi.org/10.12688/f1000research.129581.1
Software Tool Article metrics
AmpSeqR: an R package for amplicon deep sequencing data analysis
[version 1; peer review: 1 approved, 2 approved with reservations]
Jiru Han, Jacob E. Munro, Melanie Bahlo
Peer Reviewers Eduardo Castro-Nallar; Cristian Koepfli and Gustavo Da Silva; Patrick Murigu Kamau Njage
  • Funders
  • National Health and Medical Research Council
  • Institute Infrastructure Support Scheme (IRIISS)
PUBLISHED 23 Mar 2023
https://doi.org/10.12688/f1000research.131637.1
Genome Note metrics
The complete genome sequences of Penicillium concavorugulosum
[version 1; peer review: 1 not approved]
Khosi Ramachela, Galaletsang Segone
Peer Reviewers Anthony A. Adegoke
PUBLISHED 23 Mar 2023
https://doi.org/10.12688/f1000research.131600.1
Genome Note metrics
The complete mitochondrial genome Hainan Gymnure Neohylomys hainanensis
[version 1; peer review: 2 approved with reservations]
Feiyun Tu, Xiaodan Hou, Qiujie Lu, Xiaofei Zhai
Peer Reviewers Michael Allen; Perinçek Seçkinozan Şeker
  • Funder
  • Natural Science Foundation of Hainan Province
PUBLISHED 16 Mar 2023
https://doi.org/10.12688/f1000research.130888.1
Research Article metrics AWAITING PEER REVIEW
Network biology of lapatinib resistance in different types of HER2-positive breast cancers informs the prioritization of the combination anticancer treatments as anti-resistance interventions
[version 1; peer review: awaiting peer review]
Bayan Alkhawaja, Anas Khaleel, Wael Abu Dayyih, Mohammed F. Hamad, Rima Hajjo, Mohammad Hailat
Peer Reviewers Invited
PUBLISHED 09 Mar 2023
81-100 of 2,028 ARTICLES
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