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https://doi.org/10.12688/f1000research.22391.1
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Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Emilie Ann Ramsahai, Vrijesh Tripathi, Melford John
Peer Reviewers Hilal Kazan; Alexander Lachmann
  • Funder
  • University of the West Indies
PUBLISHED 03 Feb 2021
https://doi.org/10.12688/f1000research.28078.1
Research Article metrics
New insights about the serine/threonine protein kinase substrates from Mycobacterium tuberculosis using molecular docking, quantum similarity analysis and DFT calculations
[version 1; peer review: 1 approved]
Alejandro Morales-Bayuelo, Jesús Sánchez-Márquez
Peer Reviewers Hugo Fraga
  • Funder
  • Fundación Universitaria Tecnológico Comfenalco
PUBLISHED 03 Feb 2021
https://doi.org/10.12688/f1000research.25713.2
Software Tool Article metrics
Revised
VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach
[version 2; peer review: 1 approved, 2 approved with reservations]
Priyansh Srivastava, Mehak Talwar, Aishwarya Yadav, Alakto Choudhary, Sabyasachi Mohanty, Samuel Bharti, Priyanka Narad, Abhishek Sengupta
Peer Reviewers Dinesh Gupta; Mitesh Dwivedi and Rasheedunnisa Begum; Animesh A Sinha
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.21782.4
Research Article metrics
Update
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
[version 4; peer review: 4 approved]
Ryan R. Wick, Kathryn E. Holt
Peer Reviewers Aleksey V. Zimin and Steven Salzberg; Robert Vaser and Mile Šikić; Mikhail Kolmogorov; Olin Silander
  • Funders
  • Department of Education, Employment and Workplace Relations, Australian Government
  • Sylvia and Charles Viertel Charitable Foundation
  • Gates Foundation
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.24854.2
Research Article metrics
Revised
Detection of antifungal drug-resistant and ERG11 gene mutations among clinical isolates of Candida species isolated from Khartoum, Sudan.
[version 2; peer review: 2 approved, 1 not approved]
Ahmed Osman Mohamed, Malik Suliman Mohamed, Mohamed Abdelrahman Hussain, Ibrahim Fatahalrahman Ahmed
Peer Reviewers Rasoul Mohammadi; Raja Ahsan Aftab; Muhammad Sajid Hamid Akash
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.26072.2
Systematic Review metrics
Revised
Maternal lipid levels in pregnant women without complications in developing risk of large for gestational age newborns: a study of meta-analysis
[version 2; peer review: 2 approved]
Muhammad Pradhiki Mahindra, Mahendra Tri Arif Sampurna, Muhammad Pradhika Mapindra, Apriska Mega Sutowo Putri
Peer Reviewers Kian Djien Liem; Victor Samuel Rajadurai
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.47692.1
Research Article metrics
Complex haploinsufficient interaction between APC11 and CYCLIN A1;2/TARDY ASYNCHRONOUS MEIOSIS in embryo development and seed germination in Arabidopsis
[version 1; peer review: 2 not approved]
Ming Yang, Yixing Wang, Lei Guo, Chun-Ming Liu
Peer Reviewers Xing-You Gu and Bhupinder Singh Batth; Takashi Hirayama
  • Funder
  • Ministry of Science and Technology of the People's Republic of China
PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.23712.4
Research Article metrics
Revised
Eggshell membrane for DNA sexing of the endangered Maleo (Macrocephalon maleo)
[version 4; peer review: 2 approved]
Pramana Yuda, Andie Wijaya Saputra
Peer Reviewers Sena Adi Subrata; Jessica Worthington Wilmer
  • Funders
  • E-PASS Project
  • Universitas Atma Jaya Yogyakarta
LATEST VERSION PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.25417.2
Research Article metrics
Revised
Applying an ecological framework to examine the multiple levels of influence affecting the utilisation of private sector adult asthma services in Khartoum, Sudan: a mixed methods study
[version 2; peer review: 1 approved, 1 not approved]
Rachael Thomson, Magde Noor, Asma Elsony
Peer Reviewers Robin J. Green; Elopy N. Sibanda
  • Funder
  • Liverpool School of Tropical Medicine
LATEST VERSION PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.6718.3
Review metrics
Revised
The Immune System and Responses to Cancer: Coordinated Evolution
[version 3; peer review: 2 approved]
Brendon J. Coventry, Maciej Henneberg
Peer Reviewers Jonathan M. Austyn; Angus Dalgleish
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.22201.3
Research Article metrics
Revised
Growth, production and feed conversion performance of the gurami sago (Osphronemus goramy Lacepède, 1801) strain in different aquaculture systems
[version 3; peer review: 2 approved, 1 approved with reservations]
Azrita Azrita, Netti Aryani, Ainul Mardiah, Hafrijal Syandri
Peer Reviewers Simon Pouil; Peter Vilhelm Skov; Rudy Agung Nugroho
  • Funder
  • Indonesia Endowment Fund for Education
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.21142.2
Software Tool Article metrics
Revised
Falco: high-speed FastQC emulation for quality control of sequencing data
[version 2; peer review: 2 approved]
Guilherme de Sena Brandine, Andrew D. Smith
Peer Reviewers R Henrik Nilsson; Weihong Qi
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.36371.1
Research Article metrics
Reverse vaccinology approach towards the in-silico multiepitope vaccine development against SARS-CoV-2
[version 1; peer review: 2 approved]
Vipul Kumar, Sudhakar Kancharla, Prachetha Kolli, Manoj Jena
Peer Reviewers Sivaraman Natarajan; Tirumala Bharani K. Settypalli
PUBLISHED 23 Jan 2021
https://doi.org/10.12688/f1000research.26429.2
Software Tool Article metrics
Revised
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks
[version 2; peer review: 2 approved]
Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
Peer Reviewers Kim-Anh Lê Cao; Anais Baudot, Judith Lambert and Laurent Tichit
  • Funders
  • Villum Fonden
  • Horizon 2020
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Jan 2021
https://doi.org/10.12688/f1000research.28288.1
Research Article metrics
Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra
[version 1; peer review: 1 approved with reservations, 1 not approved]
Evgeny S. Zhvansky, Anatoly A. Sorokin, Denis S. Zavorotnyuk, Vsevolod A. Shurkhay, Vasiliy A. Eliferov, Denis S. Bormotov, Daniil G. Ivanov, Alexander A. Potapov
Peer Reviewers Sergei A. Moshkovskii; Konstantin Chingin
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 21 Jan 2021
https://doi.org/10.12688/f1000research.42308.1
Systematic Review metrics
Hemorrhagic and ischemic stroke in patients with coronavirus disease 2019: incidence, risk factors, and pathogenesis - a systematic review and meta-analysis
[version 1; peer review: 3 approved]
Syahrul Syahrul, Helnida Anggun Maliga, Muhammad Ilmawan, Marhami Fahriani, Sukamto S. Mamada, Jonny Karunia Fajar, Andri Frediansyah, Faza Nabila Syahrul, Imran Imran, Salim Haris, Aldy Safruddin Rambe, Talha Bin Emran, Ali A. Rabaan, Ruchi Tiwari, Kuldeep Dhama, Firzan Nainu, Endang Mutiawati, Harapan Harapan
Peer Reviewers Ismail Setyopranoto; Guilherme Welter Wendt; Mahir Gachabayov
PUBLISHED 19 Jan 2021
https://doi.org/10.12688/f1000research.21397.2
Research Article metrics
Revised
The relationship between Helicobacter pylori infection and intestinal parasites in individuals from Khartoum state, Sudan: a case-control study
[version 2; peer review: 2 approved, 2 approved with reservations]
Yasir Yousif Abd Elbagi, Ahmed Bakheet Abd Alla, Mohammed Baha Eldin Saad
Peer Reviewers Elena Pomari; Paweł Krzyżek; Asmaa Ibrahim; Yeong Yeh Lee
LATEST VERSION PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.44714.1
Data Note metrics
Draft genome assembly of the biofuel grass crop Miscanthus sacchariflorus
[version 1; peer review: 2 approved]
Jose De Vega, Iain Donnison, Sarah Dyer, Kerrie Farrar
Peer Reviewers Diego Mauricio Riaño-Pachón; Maria Stefanie Dwiyanti
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.28215.1
Brief Report metrics
Evolution of SARS-CoV-2 virus and assessment of the effectiveness of COVID-19 vaccine
[version 1; peer review: 2 approved]
Veljko Veljkovic, Vladimir Perovic, Isabelle Chambers, Slobodan Paessler
Peer Reviewers Ursula Dietrich; Marwa Osama Elgendy
  • Funder
  • Agricultural Department of North Dakota
PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.21814.2
Research Article metrics
Revised
Crop production under nitrogen starvation conditions: relationships with applied organic matter and soil microbial biomass
[version 2; peer review: 2 not approved]
Masato Oda, Uchada Sukchan
Peer Reviewers Jianwei Li; Oskar Franklin
LATEST VERSION PUBLISHED 13 Jan 2021
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