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https://doi.org/10.12688/f1000research.27309.1
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The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.27532.2
Brief Report metrics
Revised
Genome-wide screening of upstream transcription factors using an expression library
[version 2; peer review: 2 approved]
Naoya Yahagi, Yoshinori Takeuchi
Peer Reviewers Kazuhiko Igarashi; Harukazu Suzuki
  • Funders
  • Suzuken Memorial Foundation
  • SENSHIN Medical Research Foundation
  • Japan Foundation for Applied Enzymology
  • Ministry of Education, Culture, Sports, Science and Technology
  • Uehara Memorial Foundation
  • Naito Foundation
  • Okinaka Memorial Institute for Medical Research
  • Takeda Science Foundation
  • Japan Heart Foundation
  • Kanae Foundation for the Promotion of Medical Science
  • Ono Medical Research Foundation
  • Nakatani Foundation for Advancement of Measuring Technologies in Biomedical Engineering
  • Senri Life Science Foundation
LATEST VERSION PUBLISHED 08 Mar 2021
https://doi.org/10.12688/f1000research.25019.2
Brief Report metrics
Revised
H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes
[version 2; peer review: 2 approved]
Andrew W. Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M. Luscombe
Peer Reviewers Haiyang Feng; Shigeki Fujiwara
LATEST VERSION PUBLISHED 01 Mar 2021
https://doi.org/10.12688/f1000research.40668.1
Software Tool Article metrics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
[version 1; peer review: 2 approved]
Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll
Peer Reviewers Molly Hannigan and Christopher Nicchitta; Jordan A. Berg
  • Funders
  • The Emmes Company
  • National Institutes of Allergy and Infectious Disease
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.51143.1
Software Tool Article metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Jacques Serizay, Julie Ahringer
Peer Reviewers Ilya Ioshikhes; Sabarinathan Radhakrishnan; Eugene Korotkov; Boris Lenhard
  • Funders
  • Wellcome Trust Senior Research Fellowship
  • Medical Research Council DTP studentship
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.24163.2
Method Article metrics
Revised
Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency
[version 2; peer review: 2 approved]
Maryam Zand, Jianhua Ruan
Peer Reviewers Tianci Song and Rui Kuang; Adi Tarca
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Feb 2021
https://doi.org/10.12688/f1000research.29978.1
Research Article metrics
Differential activation of c-Fos and Egr1 during development of the mouse visual cortex
[version 1; peer review: 1 approved, 1 approved with reservations]
Anna Ivanova, Pavel Rogozin, Grigori Enikolopov, Konstantin Anokhin, Alexander Lazutkin
Peer Reviewers Alison Barth; Marina Yu Khodanovich
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • Russian Science Foundation
PUBLISHED 08 Feb 2021
https://doi.org/10.12688/f1000research.28291.1
Research Article metrics
Analysis of rs1048943 in the CYP1A1 gene in laryngeal cancer - a case control study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Marwa Abdalwahab, Mona Ellaithi
Peer Reviewers Vijaylakshmi Jain; Tracie Cheng
PUBLISHED 05 Feb 2021
https://doi.org/10.12688/f1000research.22391.1
Research Article metrics
Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Emilie Ann Ramsahai, Vrijesh Tripathi, Melford John
Peer Reviewers Hilal Kazan; Alexander Lachmann
  • Funder
  • University of the West Indies
PUBLISHED 03 Feb 2021
https://doi.org/10.12688/f1000research.21782.4
Research Article metrics
Update
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
[version 4; peer review: 4 approved]
Ryan R. Wick, Kathryn E. Holt
Peer Reviewers Aleksey V. Zimin and Steven Salzberg; Robert Vaser and Mile Šikić; Mikhail Kolmogorov; Olin Silander
  • Funders
  • Department of Education, Employment and Workplace Relations, Australian Government
  • Sylvia and Charles Viertel Charitable Foundation
  • Gates Foundation
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.24854.2
Research Article metrics
Revised
Detection of antifungal drug-resistant and ERG11 gene mutations among clinical isolates of Candida species isolated from Khartoum, Sudan.
[version 2; peer review: 2 approved, 1 not approved]
Ahmed Osman Mohamed, Malik Suliman Mohamed, Mohamed Abdelrahman Hussain, Ibrahim Fatahalrahman Ahmed
Peer Reviewers Rasoul Mohammadi; Raja Ahsan Aftab; Muhammad Sajid Hamid Akash
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.23712.4
Research Article metrics
Revised
Eggshell membrane for DNA sexing of the endangered Maleo (Macrocephalon maleo)
[version 4; peer review: 2 approved]
Pramana Yuda, Andie Wijaya Saputra
Peer Reviewers Sena Adi Subrata; Jessica Worthington Wilmer
  • Funders
  • E-PASS Project
  • Universitas Atma Jaya Yogyakarta
LATEST VERSION PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.21142.2
Software Tool Article metrics
Revised
Falco: high-speed FastQC emulation for quality control of sequencing data
[version 2; peer review: 2 approved]
Guilherme de Sena Brandine, Andrew D. Smith
Peer Reviewers R Henrik Nilsson; Weihong Qi
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.27268.1
Software Tool Article metrics
rANOMALY: AmplicoN wOrkflow for Microbial community AnaLYsis
[version 1; peer review: 2 approved]
Sebastien Theil, Etienne Rifa
Peer Reviewers Florent Murat; Simon Roux
PUBLISHED 07 Jan 2021
https://doi.org/10.12688/f1000research.25142.2
Research Article metrics
Revised
Anti-c-myc cholesterol based lipoplexes as onco-nanotherapeutic agents in vitro
[version 2; peer review: 3 approved]
Saffiya Habib, Aliscia Daniels, Mario Ariatti, Moganavelli Singh
Peer Reviewers Patrick Arbuthnot; Kaushik Pal; Basiru Olaitan Ajiboye
  • Funder
  • National Research Foundation
LATEST VERSION PUBLISHED 07 Jan 2021
https://doi.org/10.12688/f1000research.25390.2
Research Article metrics
Revised
A proposed molecular mechanism for pathogenesis of severe RNA-viral pulmonary infections
[version 2; peer review: 4 approved]
Peter K. Rogan, Eliseos J. Mucaki, Ben C. Shirley
Peer Reviewers Maurizio Romano; Mansi Srivastava; Gregory Fonseca; Ian Eperon
  • Funders
  • Compute Canada
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 06 Jan 2021
https://doi.org/10.12688/f1000research.26170.2
Research Article metrics
Revised
Development of species-specific SCAR markers for identification and authentication of three rare Peninsular Malaysian endemic Coelogyne (Orchidaceae) orchids
[version 2; peer review: 2 approved]
Yoh Kok Hon, Christina Seok-Yien Yong, Janna Ong Abdullah, Rusea Go
Peer Reviewers Mohd Norfaizal Ghazali; Jean Wan Hong Yong
  • Funder
  • Universiti Putra Malaysia
LATEST VERSION PUBLISHED 05 Jan 2021
https://doi.org/10.12688/f1000research.19080.2
Study Protocol metrics
Revised
A recall-by-genotype study on polymorphisms in the TMPRSS6 gene and oral iron absorption: a study protocol
[version 2; peer review: 1 approved, 1 approved with reservations]
Momodou W. Jallow, Susana Campino, Andrew M. Prentice, Carla Cerami
Peer Reviewers Dale R. Nyholt and Hamzeh MESRIAN TANHA; Alida Melse-Boonstra
  • Funders
  • Department for International Development
  • Medical Research Council UK
LATEST VERSION PUBLISHED 04 Jan 2021
https://doi.org/10.12688/f1000research.23390.2
Software Tool Article metrics
Revised
Seqpare: a novel metric of similarity between genomic interval sets
[version 2; peer review: 2 approved]
Selena C. Feng, Nathan C. Sheffield, Jianglin Feng
Peer Reviewers Zhaohui Steve Qin; Burcak Otlu
LATEST VERSION PUBLISHED 04 Jan 2021
https://doi.org/10.12688/f1000research.25626.1
Brief Report metrics
Unusual occurrence of rare Geastrum species with an abnormal stoma development found in Madurai, Tamil Nadu, India
[version 1; peer review: 1 approved with reservations, 1 not approved]
Veluswamy Karthikeyan
Peer Reviewers Julieth Sousa; Shwet Kamal and Babita Kumari
PUBLISHED 05 Nov 2020
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