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https://doi.org/10.12688/f1000research.27502.2
Research Article metrics
Revised
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
[version 2; peer review: 3 approved]
Hugo Maruyama, Ayako Masago, Takayuki Nambu, Chiho Mashimo, Kazuya Takahashi, Toshinori Okinaga
Peer Reviewers Takuichi Sato; Rohit Kunnath Menon; Priya Nimish Deo
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 09 Apr 2021
https://doi.org/10.12688/f1000research.24818.3
Research Article metrics
Revised
β-lactamases (bla TEM, bla SHV, bla CTXM-1, bla VEB, bla OXA-1) and class C β-lactamases gene frequency in Pseudomonas aeruginosa isolated from various clinical specimens in Khartoum State, Sudan: a cross sectional study
[version 3; peer review: 2 approved]
Dina N. Abdelrahman, Aya A. Taha, Mazar M. Dafaallah, Alaa Abdelgafoor Mohammed, Abdel Rahim M. El Hussein, Ahmed I. Hashim, Yousif F. Hamedelnil, Hisham N. Altayb
Peer Reviewers Nobumichi Kobayashi; Muhammad Qasim
LATEST VERSION PUBLISHED 01 Apr 2021
https://doi.org/10.12688/f1000research.51213.2
Research Article metrics
Revised
MGMT promoter gene methylation and neurological scale improvement in glioma: a cohort study
[version 2; peer review: 1 approved, 1 not approved]
Pricilla Yani Gunawan, Andi Asadul Islam, Julius July, Ilhamjaya Patelongi, Agussalim Bukhari, Muh. Nasrum Massi
Peer Reviewers Young Zoon Kim; Ery Kus Dwianingsih
LATEST VERSION PUBLISHED 30 Mar 2021
https://doi.org/10.12688/f1000research.27089.2
Research Article metrics
Revised
In silico analysis of cross reactivity among phospholipases from Hymenoptera species
[version 2; peer review: 2 approved]
Yuliana Emiliani, Andrés Sánchez, Marlon Munera, Jorge Sánchez, Dilia Aparicio
Peer Reviewers Anna Pomés; Jose F. Cantillo
LATEST VERSION PUBLISHED 29 Mar 2021
https://doi.org/10.12688/f1000research.51546.1
Research Article metrics
A new method for early detection of latent infection by ‘Candidatus Liberibacter asiaticus’ in citrus trees
[version 1; peer review: 1 approved, 1 approved with reservations]
Kazuki Fujiwara, Kenta Tomimura, Toru Iwanami, Takashi Fujikawa
Peer Reviewers Siti Subandiyah; Madhurababu Kunta
  • Funder
  • This work was supported in part by grants from the Project of the NARO Bio-oriented Technology Research Advancement Institution (Research program on development of innovative technology).
PUBLISHED 29 Mar 2021
https://doi.org/10.12688/f1000research.27676.2
Research Article metrics
Revised
In silico prediction of structure and function for a large family of transmembrane proteins that includes human Tmem41b
[version 2; peer review: 2 approved, 1 approved with reservations]
Shahram Mesdaghi, David L. Murphy, Filomeno Sánchez Rodríguez, J. Javier Burgos-Mármol, Daniel J. Rigden
Peer Reviewers Pradip Panta and William T. Doerrler; Laszlo Dobson and Gábor Tusnády; Claudio Bassot
LATEST VERSION PUBLISHED 25 Mar 2021
https://doi.org/10.12688/f1000research.26771.2
Software Tool Article metrics
Revised
HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas
[version 2; peer review: 3 approved]
Tim O. Nieuwenhuis, Marc K. Halushka
Peer Reviewers Mazdak Salavati; Laurent Gatto; Yasin Kaymaz
  • Funders
  • National Heart, Lung, and Blood Institute
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.23740.2
Research Article metrics
Revised
Morphological and genetic evaluation of the thumbprint emperor, Lethrinus harak (Forsskål, 1775) in the Pacific and Indian Oceans
[version 2; peer review: 2 approved, 2 approved with reservations]
Muhammad Afrisal, Yukio Iwatsuki, Andi Iqbal Burhanuddin
Peer Reviewers Jayasankar Pallipuram; Femy Mahmud Sahami; Arvind Kumar Dwivedi; Siti Azizah Mohd Nor
  • Funder
  • Direktorat Jenderal Pendidikan Tinggi
LATEST VERSION PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.27309.1
Data Note metrics
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.27532.2
Brief Report metrics
Revised
Genome-wide screening of upstream transcription factors using an expression library
[version 2; peer review: 2 approved]
Naoya Yahagi, Yoshinori Takeuchi
Peer Reviewers Kazuhiko Igarashi; Harukazu Suzuki
  • Funders
  • Suzuken Memorial Foundation
  • SENSHIN Medical Research Foundation
  • Japan Foundation for Applied Enzymology
  • Ministry of Education, Culture, Sports, Science and Technology
  • Uehara Memorial Foundation
  • Naito Foundation
  • Okinaka Memorial Institute for Medical Research
  • Takeda Science Foundation
  • Japan Heart Foundation
  • Kanae Foundation for the Promotion of Medical Science
  • Ono Medical Research Foundation
  • Nakatani Foundation for Advancement of Measuring Technologies in Biomedical Engineering
  • Senri Life Science Foundation
LATEST VERSION PUBLISHED 08 Mar 2021
https://doi.org/10.12688/f1000research.25019.2
Brief Report metrics
Revised
H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes
[version 2; peer review: 2 approved]
Andrew W. Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M. Luscombe
Peer Reviewers Haiyang Feng; Shigeki Fujiwara
LATEST VERSION PUBLISHED 01 Mar 2021
https://doi.org/10.12688/f1000research.40668.1
Software Tool Article metrics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
[version 1; peer review: 2 approved]
Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll
Peer Reviewers Molly Hannigan and Christopher Nicchitta; Jordan A. Berg
  • Funders
  • The Emmes Company
  • National Institutes of Allergy and Infectious Disease
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.51143.1
Software Tool Article metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Jacques Serizay, Julie Ahringer
Peer Reviewers Ilya Ioshikhes; Sabarinathan Radhakrishnan; Eugene Korotkov; Boris Lenhard
  • Funders
  • Wellcome Trust Senior Research Fellowship
  • Medical Research Council DTP studentship
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.24163.2
Method Article metrics
Revised
Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency
[version 2; peer review: 2 approved]
Maryam Zand, Jianhua Ruan
Peer Reviewers Tianci Song and Rui Kuang; Adi Tarca
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Feb 2021
https://doi.org/10.12688/f1000research.29978.1
Research Article metrics
Differential activation of c-Fos and Egr1 during development of the mouse visual cortex
[version 1; peer review: 1 approved, 1 approved with reservations]
Anna Ivanova, Pavel Rogozin, Grigori Enikolopov, Konstantin Anokhin, Alexander Lazutkin
Peer Reviewers Alison Barth; Marina Yu Khodanovich
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • Russian Science Foundation
PUBLISHED 08 Feb 2021
https://doi.org/10.12688/f1000research.28291.1
Research Article metrics
Analysis of rs1048943 in the CYP1A1 gene in laryngeal cancer - a case control study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Marwa Abdalwahab, Mona Ellaithi
Peer Reviewers Vijaylakshmi Jain; Tracie Cheng
PUBLISHED 05 Feb 2021
https://doi.org/10.12688/f1000research.22391.1
Research Article metrics
Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Emilie Ann Ramsahai, Vrijesh Tripathi, Melford John
Peer Reviewers Hilal Kazan; Alexander Lachmann
  • Funder
  • University of the West Indies
PUBLISHED 03 Feb 2021
https://doi.org/10.12688/f1000research.21782.4
Research Article metrics
Update
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
[version 4; peer review: 4 approved]
Ryan R. Wick, Kathryn E. Holt
Peer Reviewers Aleksey V. Zimin and Steven Salzberg; Robert Vaser and Mile Šikić; Mikhail Kolmogorov; Olin Silander
  • Funders
  • Department of Education, Employment and Workplace Relations, Australian Government
  • Sylvia and Charles Viertel Charitable Foundation
  • Gates Foundation
LATEST VERSION PUBLISHED 01 Feb 2021
https://doi.org/10.12688/f1000research.24854.2
Research Article metrics
Revised
Detection of antifungal drug-resistant and ERG11 gene mutations among clinical isolates of Candida species isolated from Khartoum, Sudan.
[version 2; peer review: 2 approved, 1 not approved]
Ahmed Osman Mohamed, Malik Suliman Mohamed, Mohamed Abdelrahman Hussain, Ibrahim Fatahalrahman Ahmed
Peer Reviewers Rasoul Mohammadi; Raja Ahsan Aftab; Muhammad Sajid Hamid Akash
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.23712.4
Research Article metrics
Revised
Eggshell membrane for DNA sexing of the endangered Maleo (Macrocephalon maleo)
[version 4; peer review: 2 approved]
Pramana Yuda, Andie Wijaya Saputra
Peer Reviewers Sena Adi Subrata; Jessica Worthington Wilmer
  • Funders
  • E-PASS Project
  • Universitas Atma Jaya Yogyakarta
LATEST VERSION PUBLISHED 28 Jan 2021
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