Cell & Molecular Biology

Cell & Molecular Biology

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241-260 of 273 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.28216.4
Research Article metrics
Revised
A pilot study of red complex and three genera subgingival microbiome in periodontitis subjects with and without diabetes, evaluated by MinION platform
[version 4; peer review: 2 approved]
Boy M. Bachtiar, Citra F. Theodorea, Dicky L. Tahapary, Cindy Astrella, Natalina -, Endang W. Bachtiar
Peer Reviewers Wan Izlina Binti Wan Ibrahim; Heni Susilowati
  • Funder
  • Ministry of Research and Technology/BRIN
LATEST VERSION PUBLISHED 12 Jul 2021
https://doi.org/10.12688/f1000research.27868.3
Method Article metrics
Revised
WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data
[version 3; peer review: 2 approved]
Konstantinos Geles, Domenico Palumbo, Assunta Sellitto, Giorgio Giurato, Eleonora Cianflone, Fabiola Marino, Daniele Torella, Valeria Mirici Cappa, Giovanni Nassa, Roberta Tarallo, Alessandro Weisz, Francesca Rizzo
Peer Reviewers Juan Pablo Tosar; Wen Yao
  • Funders
  • Italian Association for Cancer Research
  • Ministero dell’Istruzione, dell’Università e della Ricerca
  • Horizon 2020
  • Regione Campania
LATEST VERSION PUBLISHED 12 Jul 2021
https://doi.org/10.12688/f1000research.52540.3
Research Article metrics
Revised
Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology
[version 3; peer review: 2 approved]
Mauro Petrillo, Carlo Brogna, Simone Cristoni, Maddalena Querci, Ornella Piazza, Guy Van den Eede
Peer Reviewers Kourosh Honarmand Ebrahimi; Margarita Aguilera
  • Funder
  • Joint Research Centre
LATEST VERSION PUBLISHED 01 Jul 2021
https://doi.org/10.12688/f1000research.28052.2
Case Report metrics
Revised
Case Report: Mosaicism of a novel nonsense variant in the neurofibromin gene underlies a mosaic generalized NF1 phenotype
[version 2; peer review: 2 approved]
Hui Li Kwong, Yong-Kwang Tay, Ene-Choo Tan
Peer Reviewers Richard J. Antaya; Joshua Tay
  • Funder
  • National Medical Research Council, Ministry of Health, Singapore
LATEST VERSION PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.53170.1
Research Article metrics
The combination of ADSCs and 10% PRP increases Rb protein expression on senescent human dermal fibroblasts
[version 1; peer review: 1 approved, 1 not approved]
Sinta Murlistyarini, Lulus Putri Aninda, Ufida Aini Afridafaz, Sri Widyarti, Agustina Tri Endharti, Teguh Wahju Sardjono
Peer Reviewers PRASETYADI MAWARDI and Loeki Enggar Fitri; Troy Harkness and Mathew Lubachowski
  • Funder
  • The Institute of Research and Community Services, Universitas Brawijaya
PUBLISHED 30 Jun 2021
https://doi.org/10.12688/f1000research.27214.2
Software Tool Article metrics
Revised
iCAT: diagnostic assessment tool of immunological history using high-throughput T-cell receptor sequencing
[version 2; peer review: 2 approved]
Ahmad Rajeh, Kyle Wolf, Courtney Schiebout, Nabeel Sait, Tim Kosfeld, Richard J. DiPaolo, Tae-Hyuk Ahn
Peer Reviewers Shuo-Wang Qiao and Ying Yao; Se-Ran Jun
  • Funder
  • Federal Bureau of Investigations
LATEST VERSION PUBLISHED 29 Jun 2021
https://doi.org/10.12688/f1000research.53364.1
Research Article metrics
Comparison of two multiplexed technologies for profiling >1,000 serum proteins that may associate with tumor burden
[version 1; peer review: 2 approved, 1 approved with reservations]
Annie Ren, Ioannis Prassas, Vijithan Sugumar, Antoninus Soosaipillai, Marcus Bernardini, Eleftherios P Diamandis, Vathany Kulasingam
Peer Reviewers Nivedita Chowdhury; Anna E Lokshin; Stefan Holdenrieder
  • Funder
  • Mount Sinai Hospital
PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.52624.2
Research Article metrics
Revised
Association of subgingival Epstein–Barr virus and periodontitis
[version 2; peer review: 2 approved]
Chaerita Maulani, Sri Lelyati C. Masulili, Widayat Djoko Santoso, Nurtami Soedarsono, Lindawati Kusdhany, Elza Ibrahim Auerkari
Peer Reviewers Muhammad Sohail Zafar; Shahida Mohd-Said
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 28 Jun 2021
https://doi.org/10.12688/f1000research.53137.1
Research Article metrics
Characterization of SARS-CoV-2 East Java isolate, Indonesia
[version 1; peer review: 2 approved, 1 approved with reservations]
Fedik Abdul Rantam, Cita Rosita Sigit Prakoeswa, Damayanti Tinduh, Jusak Nugraha, Helen Susilowati, Andi Yasmin Wijaya, Ni Nyoman Tri Puspaningsih, Dwiyanti Puspitasari, Dominicus Husada, Neneng Dewi Kurniati, Aryati Aryati
Peer Reviewers Aulanni’am Aulanni'am; Lidia Audrey Rocha Valadas; Marina Derkho
  • Funder
  • Ministry of Research and Technology; Ministry of Health of the Republic of Indonesia
PUBLISHED 16 Jun 2021
https://doi.org/10.12688/f1000research.51613.2
Data Note metrics
Revised
A draft reference assembly of the Psilocybe cubensis genome
[version 2; peer review: 2 approved]
Kevin McKernan, Liam T. Kane, Seth Crawford, Chen-Shan Chin, Aaron Trippe, Stephen McLaughlin
Peer Reviewers Jason C. Slot; Anders Goncalves da Silva and Philippe Henry
LATEST VERSION PUBLISHED 15 Jun 2021
https://doi.org/10.12688/f1000research.28510.2
Research Article metrics
Revised
Pan-cancer chromatin analysis of the human vtRNA genes uncovers their association with cancer biology
[version 2; peer review: 2 approved, 1 approved with reservations]
Rafael Sebastián Fort, María Ana Duhagon
Peer Reviewers Daniele Hasler; Deepanwita Sengupta; Yong Sun Lee
  • Funders
  • Agencia Nacional de Investigación e Innovación (ANII)
  • Comision Academica de Posgrado, UDELAR
  • Comisión Sectorial de Investigación Científica (CSIC, UDELAR)
  • Programa para el Desarrollo de las Ciencias Basicas (PEDECIBA, MEC)
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.25369.1
Opinion Article metrics
Moving forward with forward genetics: A summary of the INFRAFRONTIER Forward Genetics Panel Discussion
[version 1; peer review: 1 approved, 2 approved with reservations]
Asrar Ali Khan, Michael Raess, Martin Hrabe de Angelis
Peer Reviewers Martin S Denzel; Anton Wutz and Corinne Kaufmann; Camron D Bryant
  • Funder
  • Horizon 2020
PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52350.2
Software Tool Article metrics
Revised
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
[version 2; peer review: 2 approved]
Thaís A.R. Ramos, Nilbson R.O. Galindo, Raúl Arias-Carrasco, Cecília F. da Silva, Vinicius Maracaja-Coutinho, Thaís G. do Rêgo
Peer Reviewers Gilderlanio Araújo; Andre Yoshiaki Kashiwabara
  • Funders
  • ANID-FONDECYT
  • ACCDiS
  • ANID-PAI
  • ANID-FONDAP
  • CAPES
LATEST VERSION PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52460.1
Software Tool Article metrics
scNetViz: from single cells to networks using Cytoscape
[version 1; peer review: 2 approved]
Krishna Choudhary, Elaine C. Meng, J. Javier Diaz-Mejia, Gary D. Bader, Alexander R. Pico, John H. Morris
Peer Reviewers Luca Pinello; Kenji Kamimoto
  • Funders
  • National Resource for Network Biology
  • Chan Zuckerberg Initiative
PUBLISHED 07 Jun 2021
https://doi.org/10.12688/f1000research.50850.3
Research Article metrics
Revised
Identifying potential drug targets and candidate drugs for COVID-19: biological networks and structural modeling approaches
[version 3; peer review: 3 approved]
Gurudeeban Selvaraj, Satyavani Kaliamurthi, Gilles H. Peslherbe, Dong-Qing Wei
Peer Reviewers Sugunadevi Sakkiah; Dhurvas C. Dinesh; Turanli Beste
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ministry of Science and Technology of the People's Republic of China
  • Concordia University
  • National Natural Science Foundation of China
  • MITACS Global Research
LATEST VERSION PUBLISHED 17 May 2021
https://doi.org/10.12688/f1000research.52141.1
Software Tool Article metrics AWAITING PEER REVIEW
Restriction site-associated DNA from Python-implemented Digestion Simulations (RApyDS): a companion tool for RAD sequencing experimental design
[version 1; peer review: awaiting peer review]
Kristianne Arielle Gabriel, Maria Rejane Nepacina, Francis Tablizo, Carlo Lapid, Mark Lenczner Mendoza, Daniella Jean Pamulaklakin, Jobeth Domingo, Marc Jermaine Pontiveros, Hannah Mae Magno, Joshua Gregor Dizon, El King Morado, Jan Michael Yap
Peer Reviewers Invited
  • Funder
  • Philippine Council for Industry, Energy and Emerging Technology Research and Development of the Department of Science and Technology
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.51874.1
Research Article metrics
Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis
[version 1; peer review: 1 approved, 2 approved with reservations]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Jeffrey B. Jones; José Escudero; Patrick Eichenberger
  • Funders
  • IARPA
  • Office of the Director of National Intelligence
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.27952.2
Research Article metrics
Revised
Cytotoxic T cells response with decreased CD4/CD8 ratio during mammary tumors inhibition in rats induced by non-contact electric fields
[version 2; peer review: 2 approved]
Firman Alamsyah, Rarastoeti Pratiwi, Nisrina Firdausi, Jessica Irene Mesak Pello, Subekti Evi Dwi Nugraheni, Ahmad Ghitha Fadhlurrahman, Luthfi Nurhidayat, Warsito Purwo Taruno
Peer Reviewers Bilgin Keserci; Elfahmi Elfahmi
  • Funders
  • Ctech Labs Edwar Technology
  • Indonesian Ministry of Research, Technology and Higher Education
LATEST VERSION PUBLISHED 04 May 2021
https://doi.org/10.12688/f1000research.27393.3
Brief Report metrics
Revised
Towards establishing extracellular vesicle-associated RNAs as biomarkers for HER2+ breast cancer
[version 3; peer review: 3 approved]
Colin L. Hisey, Petr Tomek, Yohanes N.S. Nursalim, Lawrence W. Chamley, Euphemia Leung
Peer Reviewers Nagarajan Kannan; Tracy K. Hale; Bruno M. Simoes
  • Funders
  • New Zealand Breast Cancer Foundation
  • Cancer Research Trust New Zealand
  • Faculty of Medical and Health Sciences, University of Auckland
LATEST VERSION PUBLISHED 04 May 2021
https://doi.org/10.12688/f1000research.51213.2
Research Article metrics
Revised
MGMT promoter gene methylation and neurological scale improvement in glioma: a cohort study
[version 2; peer review: 1 approved, 1 not approved]
Pricilla Yani Gunawan, Andi Asadul Islam, Julius July, Ilhamjaya Patelongi, Agussalim Bukhari, Muh. Nasrum Massi
Peer Reviewers Young Zoon Kim; Ery Kus Dwianingsih
LATEST VERSION PUBLISHED 30 Mar 2021
241-260 of 273 ARTICLES
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