Cell & Molecular Biology

Cell & Molecular Biology

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241-260 of 263 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.28510.2
Research Article metrics
Revised
Pan-cancer chromatin analysis of the human vtRNA genes uncovers their association with cancer biology
[version 2; peer review: 2 approved, 1 approved with reservations]
Rafael Sebastián Fort, María Ana Duhagon
Peer Reviewers Daniele Hasler; Deepanwita Sengupta; Yong Sun Lee
  • Funders
  • Agencia Nacional de Investigación e Innovación (ANII)
  • Comision Academica de Posgrado, UDELAR
  • Comisión Sectorial de Investigación Científica (CSIC, UDELAR)
  • Programa para el Desarrollo de las Ciencias Basicas (PEDECIBA, MEC)
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.25369.1
Opinion Article metrics
Moving forward with forward genetics: A summary of the INFRAFRONTIER Forward Genetics Panel Discussion
[version 1; peer review: 1 approved, 2 approved with reservations]
Asrar Ali Khan, Michael Raess, Martin Hrabe de Angelis
Peer Reviewers Martin S Denzel; Anton Wutz and Corinne Kaufmann; Camron D Bryant
  • Funder
  • Horizon 2020
PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52350.2
Software Tool Article metrics
Revised
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
[version 2; peer review: 2 approved]
Thaís A.R. Ramos, Nilbson R.O. Galindo, Raúl Arias-Carrasco, Cecília F. da Silva, Vinicius Maracaja-Coutinho, Thaís G. do Rêgo
Peer Reviewers Gilderlanio Araújo; Andre Yoshiaki Kashiwabara
  • Funders
  • ANID-FONDECYT
  • ACCDiS
  • ANID-PAI
  • ANID-FONDAP
  • CAPES
LATEST VERSION PUBLISHED 08 Jun 2021
https://doi.org/10.12688/f1000research.52460.1
Software Tool Article metrics
scNetViz: from single cells to networks using Cytoscape
[version 1; peer review: 2 approved]
Krishna Choudhary, Elaine C. Meng, J. Javier Diaz-Mejia, Gary D. Bader, Alexander R. Pico, John H. Morris
Peer Reviewers Luca Pinello; Kenji Kamimoto
  • Funders
  • National Resource for Network Biology
  • Chan Zuckerberg Initiative
PUBLISHED 07 Jun 2021
https://doi.org/10.12688/f1000research.50850.3
Research Article metrics
Revised
Identifying potential drug targets and candidate drugs for COVID-19: biological networks and structural modeling approaches
[version 3; peer review: 3 approved]
Gurudeeban Selvaraj, Satyavani Kaliamurthi, Gilles H. Peslherbe, Dong-Qing Wei
Peer Reviewers Sugunadevi Sakkiah; Dhurvas C. Dinesh; Turanli Beste
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ministry of Science and Technology of the People's Republic of China
  • Concordia University
  • National Natural Science Foundation of China
  • MITACS Global Research
LATEST VERSION PUBLISHED 17 May 2021
https://doi.org/10.12688/f1000research.52141.1
Software Tool Article metrics AWAITING PEER REVIEW
Restriction site-associated DNA from Python-implemented Digestion Simulations (RApyDS): a companion tool for RAD sequencing experimental design
[version 1; peer review: awaiting peer review]
Kristianne Arielle Gabriel, Maria Rejane Nepacina, Francis Tablizo, Carlo Lapid, Mark Lenczner Mendoza, Daniella Jean Pamulaklakin, Jobeth Domingo, Marc Jermaine Pontiveros, Hannah Mae Magno, Joshua Gregor Dizon, El King Morado, Jan Michael Yap
Peer Reviewers Invited
  • Funder
  • Philippine Council for Industry, Energy and Emerging Technology Research and Development of the Department of Science and Technology
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.51874.1
Research Article metrics
Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis
[version 1; peer review: 1 approved, 2 approved with reservations]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Jeffrey B. Jones; José Escudero; Patrick Eichenberger
  • Funders
  • IARPA
  • Office of the Director of National Intelligence
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.27952.2
Research Article metrics
Revised
Cytotoxic T cells response with decreased CD4/CD8 ratio during mammary tumors inhibition in rats induced by non-contact electric fields
[version 2; peer review: 2 approved]
Firman Alamsyah, Rarastoeti Pratiwi, Nisrina Firdausi, Jessica Irene Mesak Pello, Subekti Evi Dwi Nugraheni, Ahmad Ghitha Fadhlurrahman, Luthfi Nurhidayat, Warsito Purwo Taruno
Peer Reviewers Bilgin Keserci; Elfahmi Elfahmi
  • Funders
  • Ctech Labs Edwar Technology
  • Indonesian Ministry of Research, Technology and Higher Education
LATEST VERSION PUBLISHED 04 May 2021
https://doi.org/10.12688/f1000research.27393.3
Brief Report metrics
Revised
Towards establishing extracellular vesicle-associated RNAs as biomarkers for HER2+ breast cancer
[version 3; peer review: 3 approved]
Colin L. Hisey, Petr Tomek, Yohanes N.S. Nursalim, Lawrence W. Chamley, Euphemia Leung
Peer Reviewers Nagarajan Kannan; Tracy K. Hale; Bruno M. Simoes
  • Funders
  • New Zealand Breast Cancer Foundation
  • Cancer Research Trust New Zealand
  • Faculty of Medical and Health Sciences, University of Auckland
LATEST VERSION PUBLISHED 04 May 2021
https://doi.org/10.12688/f1000research.51213.2
Research Article metrics
Revised
MGMT promoter gene methylation and neurological scale improvement in glioma: a cohort study
[version 2; peer review: 1 approved, 1 not approved]
Pricilla Yani Gunawan, Andi Asadul Islam, Julius July, Ilhamjaya Patelongi, Agussalim Bukhari, Muh. Nasrum Massi
Peer Reviewers Young Zoon Kim; Ery Kus Dwianingsih
LATEST VERSION PUBLISHED 30 Mar 2021
https://doi.org/10.12688/f1000research.26771.2
Software Tool Article metrics
Revised
HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas
[version 2; peer review: 3 approved]
Tim O. Nieuwenhuis, Marc K. Halushka
Peer Reviewers Mazdak Salavati; Laurent Gatto; Yasin Kaymaz
  • Funders
  • National Heart, Lung, and Blood Institute
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.27532.2
Brief Report metrics
Revised
Genome-wide screening of upstream transcription factors using an expression library
[version 2; peer review: 2 approved]
Naoya Yahagi, Yoshinori Takeuchi
Peer Reviewers Kazuhiko Igarashi; Harukazu Suzuki
  • Funders
  • Suzuken Memorial Foundation
  • SENSHIN Medical Research Foundation
  • Japan Foundation for Applied Enzymology
  • Ministry of Education, Culture, Sports, Science and Technology
  • Uehara Memorial Foundation
  • Naito Foundation
  • Okinaka Memorial Institute for Medical Research
  • Takeda Science Foundation
  • Japan Heart Foundation
  • Kanae Foundation for the Promotion of Medical Science
  • Ono Medical Research Foundation
  • Nakatani Foundation for Advancement of Measuring Technologies in Biomedical Engineering
  • Senri Life Science Foundation
LATEST VERSION PUBLISHED 08 Mar 2021
https://doi.org/10.12688/f1000research.40668.1
Software Tool Article metrics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
[version 1; peer review: 2 approved]
Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll
Peer Reviewers Molly Hannigan and Christopher Nicchitta; Jordan A. Berg
  • Funders
  • The Emmes Company
  • National Institutes of Allergy and Infectious Disease
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.51143.1
Software Tool Article metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Jacques Serizay, Julie Ahringer
Peer Reviewers Ilya Ioshikhes; Sabarinathan Radhakrishnan; Eugene Korotkov; Boris Lenhard
  • Funders
  • Wellcome Trust Senior Research Fellowship
  • Medical Research Council DTP studentship
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.24163.2
Method Article metrics
Revised
Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency
[version 2; peer review: 2 approved]
Maryam Zand, Jianhua Ruan
Peer Reviewers Tianci Song and Rui Kuang; Adi Tarca
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Feb 2021
https://doi.org/10.12688/f1000research.24854.2
Research Article metrics
Revised
Detection of antifungal drug-resistant and ERG11 gene mutations among clinical isolates of Candida species isolated from Khartoum, Sudan.
[version 2; peer review: 2 approved, 1 not approved]
Ahmed Osman Mohamed, Malik Suliman Mohamed, Mohamed Abdelrahman Hussain, Ibrahim Fatahalrahman Ahmed
Peer Reviewers Rasoul Mohammadi; Raja Ahsan Aftab; Muhammad Sajid Hamid Akash
LATEST VERSION PUBLISHED 29 Jan 2021
https://doi.org/10.12688/f1000research.23712.4
Research Article metrics
Revised
Eggshell membrane for DNA sexing of the endangered Maleo (Macrocephalon maleo)
[version 4; peer review: 2 approved]
Pramana Yuda, Andie Wijaya Saputra
Peer Reviewers Sena Adi Subrata; Jessica Worthington Wilmer
  • Funders
  • E-PASS Project
  • Universitas Atma Jaya Yogyakarta
LATEST VERSION PUBLISHED 28 Jan 2021
https://doi.org/10.12688/f1000research.21142.2
Software Tool Article metrics
Revised
Falco: high-speed FastQC emulation for quality control of sequencing data
[version 2; peer review: 2 approved]
Guilherme de Sena Brandine, Andrew D. Smith
Peer Reviewers R Henrik Nilsson; Weihong Qi
LATEST VERSION PUBLISHED 27 Jan 2021
https://doi.org/10.12688/f1000research.25142.2
Research Article metrics
Revised
Anti-c-myc cholesterol based lipoplexes as onco-nanotherapeutic agents in vitro
[version 2; peer review: 3 approved]
Saffiya Habib, Aliscia Daniels, Mario Ariatti, Moganavelli Singh
Peer Reviewers Patrick Arbuthnot; Kaushik Pal; Basiru Olaitan Ajiboye
  • Funder
  • National Research Foundation
LATEST VERSION PUBLISHED 07 Jan 2021
https://doi.org/10.12688/f1000research.25390.2
Research Article metrics
Revised
A proposed molecular mechanism for pathogenesis of severe RNA-viral pulmonary infections
[version 2; peer review: 4 approved]
Peter K. Rogan, Eliseos J. Mucaki, Ben C. Shirley
Peer Reviewers Maurizio Romano; Mansi Srivastava; Gregory Fonseca; Ian Eperon
  • Funders
  • Compute Canada
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 06 Jan 2021
241-260 of 263 ARTICLES
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