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https://doi.org/10.12688/f1000research.164583.1
Software Tool Article metrics
Assembly and quantification of transcripts from noisy long reads with NIFFLR
[version 1; peer review: 1 approved with reservations, 2 not approved]
Alina Guo, Mihaela Pertea, Aleksey V Zimin
Peer Reviewers Colin Dewey; Fairlie Reese; Yuan Gao
  • Funders
  • Directorate for Biological Sciences
  • NIH
PUBLISHED 20 Jun 2025
https://doi.org/10.12688/f1000research.163843.1
Research Article metrics AWAITING PEER REVIEW
Differences between human male and female neutrophils with respect to which RNAs are present in polysomes
[version 1; peer review: awaiting peer review]
Darrell Pilling, Kristen M. Consalvo, Sara A. Kirolos, Richard H. Gomer
Peer Reviewers Invited
  • Funder
  • National Institutes of Health
PUBLISHED 30 May 2025
https://doi.org/10.12688/f1000research.130430.3
Data Note metrics
Revised
Cigarette smoke alters circRNA expression in human T-cells
[version 3; peer review: 1 approved, 2 approved with reservations]
So Jin Hong, Zhaohao Liao, Kenneth W. Witwer, Ashley E. Russell
Peer Reviewers Thivanka Muthumalage; Zahraa Rahal; Meity Ardiana
  • Funder
  • National Institute on Drug Abuse
LATEST VERSION PUBLISHED 09 Apr 2025
https://doi.org/10.12688/f1000research.151350.2
Systematic Review metrics
Revised
Diagnostic and Prognostic Values of miRNAs in High-Grade Gliomas: A Systematic Review
[version 2; peer review: 2 approved]
Renindra Ananda Aman, Mohammad Galih Pratama, Ricky Rusydi Satriawan, Irfani Ryan Ardiansyah, I Ketut Agus Suanjaya
Peer Reviewers Dessika Rahmawati; Abel Po-Hao Huang
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.74416.2
Software Tool Article metrics
Revised
BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
[version 2; peer review: 1 approved, 2 approved with reservations]
Alan O'Callaghan, Nils Eling, John C. Marioni, Catalina A. Vallejos
Peer Reviewers Oliver M. Crook; Andrew McDavid; Michel S Naslavsky
  • Funders
  • Cancer Research UK
  • University of Edinburgh
  • European Molecular Biology Laboratory
LATEST VERSION PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.144077.1
Study Protocol metrics
VDR mRNA Expression And Serum Vitamin D Levels in Post-Covid Vaccinated Patients
[version 1; peer review: 1 approved, 1 approved with reservations]
Sandesh Shende, Jaishriram Rathored
Peer Reviewers Gaurav Kaushik; Olga Adriana Caliman-Sturdza
PUBLISHED 23 Apr 2024
https://doi.org/10.12688/f1000research.125945.2
Review metrics
Revised
Pathomechanisms Of Non-Coding RNAs, Hub Genes, and Lifestyle Related To The Oxidative Stress In Type 2 Diabetes And Cardiac Complications.
[version 2; peer review: 1 approved, 1 not approved]
Fatemeh Hajibabaie, Faranak Aali, Navid Abedpoor
Peer Reviewers Gladys Ko; Yi Song
LATEST VERSION PUBLISHED 13 Sep 2023
https://doi.org/10.12688/f1000research.130316.1
Research Article metrics
Impact of estrogen and progesterone hormone receptors on the progression of interferon-γ sensitized breast cancer cells
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Israa Shihab, Amal Bouzid, Burcu Yener, Alaa Altaie, Poorna Manasa Bhamidimarri, Mouza Al Ameri, Riyad Bendardaf, Mawieh Hamad, Rifat Hamoudi
Peer Reviewers Aamir Ahmed; Wenbin Zhou; Claudia Lanari and Andrés Elia
  • Funders
  • Al-Jalila Foundation
  • ASPIRE Precision Medicine Research Institute Abu Dhabi
PUBLISHED 08 Sep 2023
https://doi.org/10.12688/f1000research.128320.3
Research Article metrics
Revised
Concatenated 16S rRNA sequence analysis improves bacterial taxonomy
[version 3; peer review: 2 approved]
Bobby Paul
Peer Reviewers Siddaramappa Shivakumara; Wellyzar Sjamsuridzal
  • Funder
  • Manipal Academy of Higher Education
LATEST VERSION PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.125351.2
Research Article metrics
Revised
Circadian clock control of tRNA synthetases in Neurospora crassa
[version 2; peer review: 2 approved]
Kathrina D. Castillo, Emily D. Chapa, Teresa M. Lamb, Madhusree Gangopadhyay, Deborah Bell-Pedersen
Peer Reviewers Ruifeng Cao; Luis F. Larrondo
  • Funders
  • National Institute of General Medical Sciences
  • Arnold and Mabel Beckman Foundation
LATEST VERSION PUBLISHED 17 Aug 2023
https://doi.org/10.12688/f1000research.131861.2
Research Article metrics
Revised
Single-cell transcriptional uncertainty landscape of cell differentiation
[version 2; peer review: 2 approved]
Nan Papili Gao, Olivier Gandrillon, András Páldi, Ulysse Herbach, Rudiyanto Gunawan
Peer Reviewers Alessandro Giuliani; Geneviève Dupont
  • Funders
  • Swiss National Science Foundation
  • Agence Nationale de la Recherche
LATEST VERSION PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.128716.2
Review metrics
Revised
Circadian clocks in health and disease: Dissecting the roles of the biological pacemaker in cancer
[version 2; peer review: 2 approved]
Bridget M. Fortin, Alisa L. Mahieu, Rachel C. Fellows, Nicholas R. Pannunzio, Selma Masri
Peer Reviewers Phillip Karpowicz; Kristin Eckel-Mahan
  • Funders
  • American Cancer Society
  • National Institutes of Health
  • Johnson and Johnson
  • V Foundation for Cancer Research
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.132670.1
Research Article metrics
Evaluation of serum complement C4 among COVID-19 patients in Khartoum state: a case control-based study
[version 1; peer review: 2 approved, 1 approved with reservations]
Mohammed Yahya, Yousif Ali Rahamtalla, Nasr Mohammed Nasr, Babbiker Mohammed Taher Gorish
Peer Reviewers Adnan Mezher Maysam; Marwa Hameed Alkhafaji; Andang Miatmoko
PUBLISHED 21 Apr 2023
https://doi.org/10.12688/f1000research.125579.1
Research Article metrics
Cell-type classification of cancer single-cell RNA-seq data using the Subsemble ensemble-based machine learning classifier
[version 1; peer review: 3 approved with reservations]
David Chen, Parisa Shooshtari
Peer Reviewers Saskia Freytag; Yue Cao; Zhixiang Ren
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ontario Institute for Cancer Research
  • Children's Health Research Institute
  • NSERC Undergraduate Student Research Award
PUBLISHED 14 Apr 2023
https://doi.org/10.12688/f1000research.128537.1
Research Article metrics
Association between mutant E6 and E7 Human Papilloma Virus Type 16 oncogenes with cyclin D1 expression in cervical cancer: Observational study in Bali
[version 1; peer review: 1 approved with reservations, 2 not approved]
I Nyoman Bayu Mahendra, I Nyoman Gede Budiana, I Gede Mega Putra, Anom Suardika, Anak Agung Gede Putra Wiradnyana, Alisza Novrita Sari
Peer Reviewers Jacyara Macedo; Eric Siegel; Atar Singh Kushwah
PUBLISHED 09 Mar 2023
https://doi.org/10.12688/f1000research.122161.2
Method Article metrics
Revised
Diagnostic accuracy for a plasma SARS-CoV-2 Nucleocapsid Protein method
[version 2; peer review: 1 approved, 1 approved with reservations]
Søren Kristiansen, Laura Emilie Schmidt, Ann-Britt Nygaard Hillig, Thyge Lynghøj Nielsen, Thomas Ingemann Pedersen, Nikolai Søren Kirkby, Thomas Schiøler, Thore Hillig
Peer Reviewers Mohammad M. Sajadi and Zahra Rikhtegaran Tehrani; Nora Pisanic
LATEST VERSION PUBLISHED 22 Feb 2023
https://doi.org/10.12688/f1000research.128583.1
Research Article metrics
Blood RNA and protein biomarkers are associated with vaping and dual use, and prospective health outcomes
[version 1; peer review: 2 approved with reservations]
Andrew Gregory, Zhonghui Xu, Katherine Pratte, Seth Berman, Robin Lu, Rahul Suryadevara, Robert Chase, Jeong H. Yun, Aabida Saferali, Craig P. Hersh, Edwin K. Silverman, Russell P. Bowler, Laura E. Crotty Alexander, Adel Boueiz, Peter J. Castaldi
Peer Reviewers John W Holloway; Fatema Shafie Khorassani
  • Funder
  • National Heart, Lung, and Blood Institute
PUBLISHED 02 Feb 2023
https://doi.org/10.12688/f1000research.110492.2
Research Article metrics
Revised
From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)
[version 2; peer review: 2 approved]
Maksim Nesterenko, Aleksei Miroliubov
Peer Reviewers Andreas Hejnol and Ferenc Kagan; Viatcheslav Ivanenko
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.124724.1
Research Article metrics
Diurnal small RNA expression and post-transcriptional regulation in young and old Drosophila melanogaster heads
[version 1; peer review: 1 approved with reservations, 1 not approved]
Rosalyn M. Fey, Eileen S. Chow, Barbara O. Gvakharia, Jadwiga M. Giebultowicz, David A. Hendrix
Peer Reviewers Taichiro Iki; Alex Flynt
  • Funder
  • National Institute of Aging of NIH
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.123391.1
Research Article metrics
Aspergillus oryzae attenuates quorum sensing -associated virulence factors and biofilm formation in Klebsiella pneumoniae extended-spectrum beta-lactamases
[version 1; peer review: 1 approved with reservations]
Lailia Nur Rachma, Loeki Enggar Fitri, Sumarno Reto Prawiro, Tri Yudani Mardining Raras
Peer Reviewers Lokender Kumar
  • Funder
  • Universitas Brawijaya
PUBLISHED 07 Oct 2022
1-20 of 36 ARTICLES
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