Genomics and Genetics

Genomics and Genetics

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141-158 of 158 ARTICLES
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https://doi.org/10.12688/f1000research.27309.1
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The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.44714.1
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Draft genome assembly of the biofuel grass crop Miscanthus sacchariflorus
[version 1; peer review: 2 approved]
Jose De Vega, Iain Donnison, Sarah Dyer, Kerrie Farrar
Peer Reviewers Diego Mauricio Riaño-Pachón; Maria Stefanie Dwiyanti
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 18 Jan 2021
https://doi.org/10.12688/f1000research.26524.1
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Complete mitochondrial genome of the endangered species Brycon nattereri (Characiformes, Characidae)
[version 1; peer review: 2 approved with reservations]
Snaydia Viegas Resende, Rubens Pasa, Fabiano Bezerra Menegídio, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
Peer Reviewers Yong Zhang; Dora Davies and Juan José Lauthier
PUBLISHED 18 Nov 2020
https://doi.org/10.12688/f1000research.25560.1
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The complete genome sequences of 22 parrot species (Psittaciformes, Aves)
[version 1; peer review: 3 approved with reservations]
Taylor Hains, Kathleen O'Neill, Jafet Velez, Nancy Speed, Susan Clubb, Taras Oleksyk, Stacy Pirro
Peer Reviewers Paweł Mackiewicz; Devon DeRaad and John McCormack; Roberto Ambrosini and Simona Secomandi
  • Funder
  • Iridian Genomes Inc
PUBLISHED 12 Nov 2020
https://doi.org/10.12688/f1000research.26614.1
Research Article metrics
A first draft genome of the Sugarcane borer, Diatraea saccharalis.
[version 1; peer review: 2 approved with reservations]
Lucas Borges dos Santos, João Paulo Gomes Viana, Fabricio José Biasotto Francischini, Sofia Victoria Fogliata, Andrea L. Joyce, Anete Pereira de Souza, María Gabriela Murúa, Steven J. Clough, Maria Imaculada Zucchi
Peer Reviewers Jay Ghurye; Steven M Van Belleghem
  • Funders
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico
  • Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
PUBLISHED 23 Oct 2020
https://doi.org/10.12688/f1000research.25970.1
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The genome of the American groundhog, Marmota monax
[version 1; peer review: 2 approved]
Daniela Puiu, Aleksey Zimin, Alaina Shumate, Yuchen Ge, Jiabin Qiu, Manoj Bhaskaran, Steven L. Salzberg
Peer Reviewers Markus Ralser and Toni Gossmann; Mihai Pop
  • Funders
  • National Institutes of Health
  • Eli Lilly and Company
PUBLISHED 16 Sep 2020
https://doi.org/10.12688/f1000research.24396.1
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The complete genome sequence of Stevia rebaudiana, the Sweetleaf
[version 1; peer review: 2 approved, 1 approved with reservations]
Kathleen O'Neill, Stacy Pirro
Peer Reviewers Eric Lu Zhang; Andrew Miller; Dawson White
  • Funder
  • Iridian Genomes Inc
PUBLISHED 21 Jul 2020
https://doi.org/10.12688/f1000research.15719.2
Research Article metrics
Revised
First draft genome assembly of the Argane tree (Argania spinosa)
[version 2; peer review: 2 approved]
Slimane Khayi, Nour Elhouda Azza, Fatima Gaboun, Stacy Pirro, Oussama Badad, M. Gonzalo Claros, David A. Lightfoot, Turgay Unver, Bouchra Chaouni, Redouane Merrouch, Bouchra Rahim, Soumaya Essayeh, Matike Ganoudi, Rabha Abdelwahd, Ghizlane Diria, Meriem Alaoui Mdarhi, Mustapha Labhilili, Driss Iraqi, Jamila Mouhaddab, Hayat Sedrati, Majid Memari, Noureddine Hamamouch, Juan de Dios Alché, Noureddine Boukhatem, Rachid Mrabet, Rachid Dahan, Adelkhaleq Legssyer, Mohamed Khalfaoui, Mohamed Badraoui, Yves Van de Peer, Tatiana Tatusova, Abdelhamid El Mousadik, Rachid Mentag, Hassan Ghazal
Peer Reviewers Amit Sinha; Granger Sutton
  • Funders
  • Institut National de la Recherche Agronomique
  • Midterm Research Program of INRA-Morocco
  • National Institutes of Health
  • Fulbright Association
  • Iridian Genomes Inc
LATEST VERSION PUBLISHED 04 May 2020
https://doi.org/10.12688/f1000research.16734.3
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Revised
Draft genome assembly and transcriptome sequencing of the golden algae Hydrurus foetidus (Chrysophyceae)
[version 3; peer review: 2 approved]
Jon Bråte, Janina Fuss, Shruti Mehrotra, Kjetill S. Jakobsen, Dag Klaveness
Peer Reviewers Daniela Beisser and Stephan Majda; Blake T. Hovde
  • Funder
  • Norges Forskningsråd
LATEST VERSION PUBLISHED 07 Oct 2019
https://doi.org/10.12688/f1000research.18325.1
Research Article metrics
First draft genome assembly and identification of SNPs from hilsa shad (Tenualosa ilisha) of the Bay of Bengal
[version 1; peer review: 1 approved, 2 approved with reservations]
Md. Bazlur Rahman Mollah, Mohd Golam Quader Khan, Md Shahidul Islam, Md Samsul Alam
Peer Reviewers Joel A. Malek; Yuzine B. Esa; Shotaro Hirase
PUBLISHED 22 Mar 2019
https://doi.org/10.12688/f1000research.18316.1
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Whole genome sequence and genome-wide distributed single nucleotide polymorphisms (SNPs) of the Black Bengal goat
[version 1; peer review: 2 approved with reservations]
Md. Bazlur Rahman Mollah, Md. Shamsul Alam Bhuiyan, M.A.M. Yahia Khandoker, Md. Abdul Jalil, Gautam Kumar Deb, Md. Panir Choudhury, Nure Hasni Desha
Peer Reviewers Jason Miller; Almas A. Gheyas
  • Funder
  • Bangladesh Agricultural University Research Systems (BAURES)
PUBLISHED 21 Mar 2019
https://doi.org/10.12688/f1000research.16290.1
Method Article metrics
A unified GenomeSpace recipe to identify essential genes and associated subnetworks from Genome-Scale CRISPR-Cas9 knockout screens
[version 1; peer review: 2 approved with reservations]
Daniel E. Carlin, Forrest Kim, Trey Ideker, Jill P. Mesirov
Peer Reviewers Shouhong Guang; Xiaowei Wang
  • Funder
  • National Human Genome Research Institute
PUBLISHED 12 Oct 2018
https://doi.org/10.12688/f1000research.13635.1
Research Article metrics
A draft genome sequence for the Ixodes scapularis cell line, ISE6
[version 1; peer review: 2 approved]
Jason R. Miller, Sergey Koren, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Peer Reviewers Scott Emrich; Chan Heu
  • Funders
  • National Human Genome Research Institute
  • U.S. Department of Homeland Security
PUBLISHED 08 Mar 2018
https://doi.org/10.12688/f1000research.12414.2
Data Note metrics
Revised
First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
[version 2; peer review: 3 approved]
Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh
Peer Reviewers Sandip Das; Stephen P. Moose; Kashmir Singh
LATEST VERSION PUBLISHED 15 Dec 2017
https://doi.org/10.12688/f1000research.12636.2
Data Note metrics
Revised
Draft genome of tule elk Cervus canadensis nannodes
[version 2; peer review: 2 approved]
Jessica E. Mizzi, Zachary T. Lounsberry, C. Titus Brown, Benjamin N. Sacks
Peer Reviewers Steve Olsen; Rudiger Brauning
  • Funder
  • California Department of Fish and Wildlife, Big Game Management Program
LATEST VERSION PUBLISHED 11 Dec 2017
https://doi.org/10.12688/f1000research.11859.2
Data Note metrics
Revised
Draft genome sequencing of the sugarcane hybrid SP80-3280
[version 2; peer review: 2 approved]
Diego Mauricio Riaño-Pachón, Lucia Mattiello
Peer Reviewers Jason Miller; Chakravarthi Mohan
  • Funders
  • Centro Nacional de Processamento de Alto Desempenho em São Paulo
  • Brazilian Bioethanol Science and Technology Laboratory
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
LATEST VERSION PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11629.1
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Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid
[version 1; peer review: 2 approved]
Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Manolito G. Torralba, Kelvin J. Moncera, Karen Beeri, Karrie Goglin, Timothy B. Stockwell, Granger G. Sutton, Reed S. Shabman
Peer Reviewers Paulo Arruda; Jeremy R. Shearman
  • Funder
  • U.S. Department of Homeland Security
PUBLISHED 17 May 2017
https://doi.org/10.12688/f1000research.4492.2
Software Tool Article metrics
Revised
Cytoscape: the network visualization tool for GenomeSpace workflows
[version 2; peer review: 3 approved]
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Peer Reviewers Aris Floratos; Gabriela Bindea and Bernhard Mlecnik; Jan Aerts
LATEST VERSION PUBLISHED 26 Aug 2014
141-158 of 158 ARTICLES
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