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https://doi.org/10.12688/f1000research.14683.1
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Molecular characterization of hookworm spp. isolated from food handlers, Khartoum, Sudan: A cross-sectional study
[version 1; peer review: 2 approved with reservations]
Tarig A. Gamar, Hassan H. Musa, Hisham N. Altayb, Mohamed H. Mohamed, Adam D. Abakar
Peer Reviewers Luis Fernando Viana Furtado and Vivian Jordania da Silva; Nicole Gottdenker
PUBLISHED 24 May 2018
https://doi.org/10.12688/f1000research.14776.2
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Revised
Automation of ReactomeFIViz via CyREST API
[version 2; peer review: 2 approved]
Fred Loney, Guanming Wu
Peer Reviewers Marina Piccirillo; John H. Morris
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 23 May 2018
https://doi.org/10.12688/f1000research.14736.1
Research Article metrics
Antimicrobial peptide LL-37 and recombinant human mannose-binding lectin express distinct age- and pathogen-specific antimicrobial activity in human newborn cord blood in vitro
[version 1; peer review: 2 approved]
Annette Scheid, Ning Li, Carleen Jeffers, Francesco Borriello, Sweta Joshi, Al Ozonoff, Matthew Pettengill, Ofer Levy
Peer Reviewers Cinzia Auriti; Jerrold Weiss
  • Funders
  • Shire
  • National Institutes of Health
  • Compagnia di San Paolo
  • National Institute of Allergy and Infectious Diseases
  • U.S. Department of Health and Human Services
  • Boston Children's Hospital
  • Università degli Studi di Napoli Federico II
  • Gates Foundation
PUBLISHED 21 May 2018
https://doi.org/10.12688/f1000research.13496.2
Research Article metrics
Revised
Evaluation of the potential defensive strategy against Influenza A in cell line models
[version 2; peer review: 2 approved]
Ekaterina Antonova, Olga Glazova, Anna Gaponova, Aykaz Eremyan, Natalya Grebenkina, Svetlana Zvereva, Natalya Volkova, Pavel Volchkov
Peer Reviewers Gillian M Air; Laurence S. Tiley
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 16 May 2018
https://doi.org/10.12688/f1000research.14753.1
Method Article metrics
The use of PrP transgenic Drosophila to replace and reduce vertebrate hosts in the bioassay of mammalian prion infectivity
[version 1; peer review: 2 approved]
Alana M. Thackray, Olivier Andréoletti, Raymond Bujdoso
Peer Reviewers Janne M Toivonen; James Alibhai and Siddharthan Chandran
  • Funder
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
PUBLISHED 15 May 2018
https://doi.org/10.12688/f1000research.13254.2
Software Tool Article metrics
Revised
Simulation and visualization of multiple KEGG pathways using BioNSi
[version 2; peer review: 2 approved, 1 approved with reservations]
Adva Yeheskel, Adam Reiter, Metsada Pasmanik-Chor, Amir Rubinstein
Peer Reviewers Aurélien Naldi; Giovanni Scardoni; Ester Feldmesser and Bareket Dassa
LATEST VERSION PUBLISHED 14 May 2018
https://doi.org/10.12688/f1000research.14785.1
Brief Report metrics
Long non-coding RNA LINC00987 may function as a tumor suppressor in lung adenocarcinoma
[version 1; peer review: 1 approved with reservations, 1 not approved]
Adrian Salavaty, Zahra Rezvani, Ali Najafi
Peer Reviewers Antonio Marco; Wen Cai Zhang
PUBLISHED 04 May 2018
https://doi.org/10.12688/f1000research.14383.1
Case Report metrics
Case Report: Exome sequencing reveals recurrent RETSAT mutations and a loss-of-function POLDIP2 mutation in a rare undifferentiated tongue sarcoma
[version 1; peer review: 3 approved]
Jason Y. K. Chan, Peony Hiu Yan Poon, Yong Zhang, Cherrie W. K. Ng, Wen Ying Piao, Meng Ma, Kevin Y. Yip, Amy B. W. Chan, Vivian Wai Yan Lui
Peer Reviewers Tsung Lin Yang; Marietta Tan; Robin Jones
  • Funders
  • Research Grants Council, University Grants Committee
  • Chinese University of Hong Kong
  • Hong Kong Cancer Fund
  • Dr Stanley Ho Medical Foundation
PUBLISHED 26 Apr 2018
https://doi.org/10.12688/f1000research.13801.1
Research Article metrics
TDG regulates cell cycle progression in human neural progenitors
[version 1; peer review: 2 approved with reservations]
Igal Germanguz, Jenny C. Park, Jessica Cinkornpumin, Aryeh Solomon, Minori Ohashi, William E. Lowry
Peer Reviewers Alexey Ruzov and Abdulkadir Abakir; Rahul Prasad, Timothy Yen and Alfonso Bellacosa
  • Funders
  • California Stem Cell Agency
  • Paul G. Allen Frontiers Group
  • University of California, Los Angeles
  • National Institutes of Health
PUBLISHED 26 Apr 2018
https://doi.org/10.12688/f1000research.13247.1
Review metrics
Generating and repairing genetically programmed DNA breaks during immunoglobulin class switch recombination
[version 1; peer review: 2 approved]
Laura Nicolas, Montserrat Cols, Jee Eun Choi, Jayanta Chaudhuri, Bao Vuong
Peer Reviewers Paolo Casali; Amy Kenter
  • Funders
  • National Cancer Institute
  • National Institutes of Health
  • National Institute on Minority Health and Health Disparities
PUBLISHED 13 Apr 2018
https://doi.org/10.12688/f1000research.13049.2
Software Tool Article metrics
Revised
RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting
[version 2; peer review: 2 approved]
Travis L. Jensen, Michael Frasketi, Kevin Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, Johannes B. Goll
Peer Reviewers Anup Mahurkar; Ben Busby
  • Funders
  • Emmes Corporation
  • National Institutes of Health
LATEST VERSION PUBLISHED 13 Apr 2018
https://doi.org/10.12688/f1000research.14019.1
Research Article metrics
Internal transcribed spacer for identification of yeast species isolated from cancer patients at the Isotope and Radiation Center, Khartoum, Sudan: A cross-sectional, case-control study
[version 1; peer review: 1 approved, 1 approved with reservations]
Mohamed M.A. Nagla, Omer E. El Fadil, Abdel Hamid M. Muzamil, Altayeb N. Hisham, Mohamed B. Bahaeldeen, El-Amin El-Nour
Peer Reviewers Dimitrios Farmakiotis and Zoe Weiss; Lucia Bulacio
  • Funder
  • Ministry of Higher Education and Scientific Research, Sudan
PUBLISHED 11 Apr 2018
https://doi.org/10.12688/f1000research.12486.2
Software Tool Article metrics
Revised
Fragger: a protein fragment picker for structural queries
[version 2; peer review: 2 approved]
Francois Berenger, David Simoncini, Arnout Voet, Rojan Shrestha, Kam Y.J. Zhang
Peer Reviewers Pierre Tuffery; Charlotte Deane and Saulo de Oliveira
  • Funders
  • RIKEN
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 10 Apr 2018
https://doi.org/10.12688/f1000research.13592.1
Research Article metrics
Cytoglobin, neuroglobin, and acetylcholinesterase activity in rat brain as adaptation responses to intermittent hypobaric hypoxia
[version 1; peer review: 2 not approved]
Angelina Stevany Regina Masengi, Fanny Septiani Farhan, Wawan Mulyawan, Mohamad Sadikin, Ninik Mudjihartini, Sri Widia A. Jusman
Peer Reviewers Elena Rybnikova and Oleg Vetrovoy; Joan Ramon Torrella and Ginés Viscor
  • Funders
  • Indonesian Air Force Institute, LAKESPRA dr. Saryanto, Jakarta
  • Hibah PITTA 2006-DRPM Universitas Indonesia
PUBLISHED 04 Apr 2018
https://doi.org/10.12688/f1000research.13679.1
Review metrics
Cutting down the time to identify challenging tumor therapeutic targets and drug combinations using synthetic lethal approaches
[version 1; peer review: 2 approved]
John S. Lazo
Peer Reviewers Kirk McManus; Tero Aittokallio
  • Funders
  • Cure Alzheimer's Fund
  • Fiske Drug Discovery Fund
  • National Institutes of Health
  • Owens Family
  • Department of Defense
PUBLISHED 12 Mar 2018
https://doi.org/10.12688/f1000research.12947.3
Software Tool Article metrics
Revised
PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks
[version 3; peer review: 1 approved, 1 approved with reservations]
Dongmin Jung, Xijin Ge
Peer Reviewers Cathy H. Wu and Karen E. Ross; Helen V. Cook
  • Funder
  • National Science Foundation
LATEST VERSION PUBLISHED 12 Mar 2018
https://doi.org/10.12688/f1000research.11056.2
Brief Report metrics
Revised
Mitochondrial dysfunction in an animal model of diabetic neuropathy is associated with a reduction of neurosteroid synthesis.
[version 2; peer review: 2 approved]
Stephen R. Humble
Peer Reviewers Slobodan M. Todorovic; Pascal Darbon
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 09 Mar 2018
https://doi.org/10.12688/f1000research.13635.1
Research Article metrics
A draft genome sequence for the Ixodes scapularis cell line, ISE6
[version 1; peer review: 2 approved]
Jason R. Miller, Sergey Koren, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Peer Reviewers Scott Emrich; Chan Heu
  • Funders
  • National Human Genome Research Institute
  • U.S. Department of Homeland Security
PUBLISHED 08 Mar 2018
https://doi.org/10.12688/f1000research.14117.1
Opinion Article metrics
Defining “FGF21 Resistance” during obesity: Controversy, criteria and unresolved questions
[version 1; peer review: 1 approved, 2 approved with reservations]
Kathleen R. Markan
Peer Reviewers Moosa Mohammadi; Junichiro Sonoda; Andrew C. Adams
  • Funder
  • National Institutes of Health
PUBLISHED 07 Mar 2018
https://doi.org/10.12688/f1000research.13930.1
Software Tool Article metrics
Seqfam: A python package for analysis of Next Generation Sequencing DNA data in families
[version 1; peer review: 1 approved with reservations, 1 not approved]
Matthew Frampton, Elena R. Schiff, Nikolas Pontikos, Anthony W. Segal, Adam P. Levine
Peer Reviewers Brent S. Pedersen; Alexandre Bureau and Ingo Ruczinski
  • Funder
  • Charles Wolfson Charitable Trust
PUBLISHED 06 Mar 2018
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