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https://doi.org/10.12688/f1000research.13801.1
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TDG regulates cell cycle progression in human neural progenitors
[version 1; peer review: 2 approved with reservations]
Igal Germanguz, Jenny C. Park, Jessica Cinkornpumin, Aryeh Solomon, Minori Ohashi, William E. Lowry
Peer Reviewers Alexey Ruzov and Abdulkadir Abakir; Rahul Prasad, Timothy Yen and Alfonso Bellacosa
  • Funders
  • California Stem Cell Agency
  • Paul G. Allen Frontiers Group
  • University of California, Los Angeles
  • National Institutes of Health
PUBLISHED 26 Apr 2018
https://doi.org/10.12688/f1000research.13247.1
Review metrics
Generating and repairing genetically programmed DNA breaks during immunoglobulin class switch recombination
[version 1; peer review: 2 approved]
Laura Nicolas, Montserrat Cols, Jee Eun Choi, Jayanta Chaudhuri, Bao Vuong
Peer Reviewers Paolo Casali; Amy Kenter
  • Funders
  • National Cancer Institute
  • National Institutes of Health
  • National Institute on Minority Health and Health Disparities
PUBLISHED 13 Apr 2018
https://doi.org/10.12688/f1000research.13049.2
Software Tool Article metrics
Revised
RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting
[version 2; peer review: 2 approved]
Travis L. Jensen, Michael Frasketi, Kevin Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, Johannes B. Goll
Peer Reviewers Anup Mahurkar; Ben Busby
  • Funders
  • Emmes Corporation
  • National Institutes of Health
LATEST VERSION PUBLISHED 13 Apr 2018
https://doi.org/10.12688/f1000research.14019.1
Research Article metrics
Internal transcribed spacer for identification of yeast species isolated from cancer patients at the Isotope and Radiation Center, Khartoum, Sudan: A cross-sectional, case-control study
[version 1; peer review: 1 approved, 1 approved with reservations]
Mohamed M.A. Nagla, Omer E. El Fadil, Abdel Hamid M. Muzamil, Altayeb N. Hisham, Mohamed B. Bahaeldeen, El-Amin El-Nour
Peer Reviewers Dimitrios Farmakiotis and Zoe Weiss; Lucia Bulacio
  • Funder
  • Ministry of Higher Education and Scientific Research, Sudan
PUBLISHED 11 Apr 2018
https://doi.org/10.12688/f1000research.12486.2
Software Tool Article metrics
Revised
Fragger: a protein fragment picker for structural queries
[version 2; peer review: 2 approved]
Francois Berenger, David Simoncini, Arnout Voet, Rojan Shrestha, Kam Y.J. Zhang
Peer Reviewers Pierre Tuffery; Charlotte Deane and Saulo de Oliveira
  • Funders
  • RIKEN
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 10 Apr 2018
https://doi.org/10.12688/f1000research.13592.1
Research Article metrics
Cytoglobin, neuroglobin, and acetylcholinesterase activity in rat brain as adaptation responses to intermittent hypobaric hypoxia
[version 1; peer review: 2 not approved]
Angelina Stevany Regina Masengi, Fanny Septiani Farhan, Wawan Mulyawan, Mohamad Sadikin, Ninik Mudjihartini, Sri Widia A. Jusman
Peer Reviewers Elena Rybnikova and Oleg Vetrovoy; Joan Ramon Torrella and Ginés Viscor
  • Funders
  • Indonesian Air Force Institute, LAKESPRA dr. Saryanto, Jakarta
  • Hibah PITTA 2006-DRPM Universitas Indonesia
PUBLISHED 04 Apr 2018
https://doi.org/10.12688/f1000research.13679.1
Review metrics
Cutting down the time to identify challenging tumor therapeutic targets and drug combinations using synthetic lethal approaches
[version 1; peer review: 2 approved]
John S. Lazo
Peer Reviewers Kirk McManus; Tero Aittokallio
  • Funders
  • Cure Alzheimer's Fund
  • Fiske Drug Discovery Fund
  • National Institutes of Health
  • Owens Family
  • Department of Defense
PUBLISHED 12 Mar 2018
https://doi.org/10.12688/f1000research.12947.3
Software Tool Article metrics
Revised
PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks
[version 3; peer review: 1 approved, 1 approved with reservations]
Dongmin Jung, Xijin Ge
Peer Reviewers Cathy H. Wu and Karen E. Ross; Helen V. Cook
  • Funder
  • National Science Foundation
LATEST VERSION PUBLISHED 12 Mar 2018
https://doi.org/10.12688/f1000research.11056.2
Brief Report metrics
Revised
Mitochondrial dysfunction in an animal model of diabetic neuropathy is associated with a reduction of neurosteroid synthesis.
[version 2; peer review: 2 approved]
Stephen R. Humble
Peer Reviewers Slobodan M. Todorovic; Pascal Darbon
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 09 Mar 2018
https://doi.org/10.12688/f1000research.13635.1
Research Article metrics
A draft genome sequence for the Ixodes scapularis cell line, ISE6
[version 1; peer review: 2 approved]
Jason R. Miller, Sergey Koren, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Peer Reviewers Scott Emrich; Chan Heu
  • Funders
  • National Human Genome Research Institute
  • U.S. Department of Homeland Security
PUBLISHED 08 Mar 2018
https://doi.org/10.12688/f1000research.14117.1
Opinion Article metrics
Defining “FGF21 Resistance” during obesity: Controversy, criteria and unresolved questions
[version 1; peer review: 1 approved, 2 approved with reservations]
Kathleen R. Markan
Peer Reviewers Moosa Mohammadi; Junichiro Sonoda; Andrew C. Adams
  • Funder
  • National Institutes of Health
PUBLISHED 07 Mar 2018
https://doi.org/10.12688/f1000research.13930.1
Software Tool Article metrics
Seqfam: A python package for analysis of Next Generation Sequencing DNA data in families
[version 1; peer review: 1 approved with reservations, 1 not approved]
Matthew Frampton, Elena R. Schiff, Nikolas Pontikos, Anthony W. Segal, Adam P. Levine
Peer Reviewers Brent S. Pedersen; Alexandre Bureau and Ingo Ruczinski
  • Funder
  • Charles Wolfson Charitable Trust
PUBLISHED 06 Mar 2018
https://doi.org/10.12688/f1000research.14050.1
Method Article metrics
Gene Unprediction with Spurio: A tool to identify spurious protein sequences
[version 1; peer review: 2 approved]
Wolfram Höps, Matt Jeffryes, Alex Bateman
Peer Reviewers Arne Elofsson; Daniel H. Haft
  • Funder
  • European Molecular Biology Laboratory
PUBLISHED 02 Mar 2018
https://doi.org/10.12688/f1000research.13609.1
Research Article metrics
Effects of umbilical cord- and adipose-derived stem cell secretomes on ALDH1A3 expression and autocrine TGF-β1 signaling in human breast cancer stem cells
[version 1; peer review: 1 approved with reservations, 1 not approved]
Purnamawati Purnamawati, Jeanne Adiwinata Pawitan, Andhika Rachman, Septelia Inawati Wanandi
Peer Reviewers Albert D. Donnenberg; Paola Marcato
  • Funder
  • Universitas Indonesia
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.14060.1
Research Article metrics
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma
[version 1; peer review: 2 approved]
Kenneth W. Witwer
Peer Reviewers Jens Allmer; Claus H. Bang-Berthelsen
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.12252.2
Research Article metrics
Revised
Endoplasmic reticulum-to-Golgi transitions upon herpes virus infection
[version 2; peer review: 1 approved, 3 approved with reservations]
Peter Wild, Andres Kaech, Elisabeth M. Schraner, Ladina Walser, Mathias Ackermann
Peer Reviewers Charles Grose; Gareth Griffiths; Alexandre A. Mironov; José A Martínez-Menárguez
  • Funder
  • Universität Zürich
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.12867.2
Brief Report metrics
Revised
Draft genomes of two Australian strains of the plant pathogen, Phytophthora cinnamomi
[version 2; peer review: 3 approved]
Amy L. Longmuir, Peter L. Beech, Mark F. Richardson
Peer Reviewers Nicolás Daniel Ayub; Erik Andreasson and Laura Grenville Briggs; David J. Studholme
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.11539.2
Brief Report metrics
Revised
Rheumatoid arthritis in an adult patient with mosaic distal 18q-, 18p- and ring chromosome 18
[version 2; peer review: 2 approved]
Alanna Chau, KH Ramesh, Anand D Jagannath, Shitij Arora
Peer Reviewers György Kosztolányi; Jannine D. Cody
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.13724.1
Method Article metrics
Identification of microsatellite loci in sea anemones Aulactinia stella and Cribrinopsis albopunctata (family Actiniidae)
[version 1; peer review: 3 approved]
Ekaterina S. Bocharova, Alexey A. Sergeev, Aleksandr A. Volkov
Peer Reviewers Boris Levin; Fabián H. Acuña; Svetlana V. Malysheva
  • Funder
  • Russian Foundation for Basic Research
PUBLISHED 27 Feb 2018
https://doi.org/10.12688/f1000research.13577.2
Method Article metrics
Revised
Using regulatory genomics data to interpret the function of disease variants and prioritise genes from expression studies
[version 2; peer review: 2 approved]
Enrico Ferrero
Peer Reviewers Aaron T. L. Lun; Vincent J. Carey
LATEST VERSION PUBLISHED 23 Feb 2018
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