All Research Articles

41-60 of 638 ARTICLES
https://doi.org/10.12688/f1000research.157679.1
Research Article metrics
Feather keratin in Pavo cristatus: A tentative structure
[version 1; peer review: 1 approved]
Peer Reviewers Boaz Pokroy
  • Funders
  • Carl-Zeiss-Stiftung
  • Universität Stuttgart
PUBLISHED 07 Nov 2024
https://doi.org/10.12688/f1000research.154860.1
Research Article metrics AWAITING PEER REVIEW
Mapping bread wheat trait ontologies for semantic interoperability
[version 1; peer review: awaiting peer review]
Peer Reviewers Invited
  • Funder
  • Agence Nationale de la Recherche
PUBLISHED 27 Sep 2024
https://doi.org/10.12688/f1000research.156426.1
Editorial metrics NOT PEER REVIEWED
25 Years of BOSC, the Bioinformatics Open Source Conference
[version 1; peer review: not peer reviewed]
  • Funders
  • National Science Foundation (JW)
  • Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy (NLH)
PUBLISHED 27 Sep 2024
https://doi.org/10.12688/f1000research.140344.2
Research Article metrics
Revised
NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
[version 2; peer review: 2 approved]
Peer Reviewers Justin M. Zook; Kez Cleal
  • Funders
  • German Federal Ministry for Education and Research
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 12 Sep 2024
https://doi.org/10.12688/f1000research.153895.1
Opinion Article metrics
From the establishment of a national bioinformatics society to the development of a national bioinformatics infrastructure
[version 1; peer review: 3 approved with reservations]
Peer Reviewers Francis Ouellette; Federico Zambelli; Carol Goble
  • Funder
  • EEA Grants/Norway Grants (Bioinformatics Capacity Building Human Genomics, an RSBI and ELIXIR Norway bilateral project)
PUBLISHED 03 Sep 2024
https://doi.org/10.12688/f1000research.131134.2
Research Article metrics
Revised
Improving genomic prediction of rhizomania resistance in sugar beet (Beta vulgaris L.) by implementing epistatic effects and feature selection
[version 2; peer review: 1 approved with reservations, 3 not approved]
Peer Reviewers J Mitchell McGrath; Muhammad Massub Tehseen; Daniela Holtgräwe; Chenggen Chu
LATEST VERSION PUBLISHED 28 Aug 2024
https://doi.org/10.12688/f1000research.151409.1
Research Article metrics
Design, molecular docking, synthesis and in vitro evaluation of anti-influenza activity of oseltamivir carboxamides and their hybrid molecules with hydroxamic acid
[version 1; peer review: 1 approved]
Peer Reviewers Hasanain Odhar
PUBLISHED 20 Aug 2024
https://doi.org/10.12688/f1000research.153905.1
Software Tool Article metrics
MirtronStructDB: A Comprehensive Database of Mirtrons with Predicted Secondary Structures
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Panos Kakoulidis; Lachlan Coin
  • Funders
  • The University of Hong Kong
  • Hong Kong Research Grants Council
  • Shenzhen Municipal Government General Program
PUBLISHED 06 Aug 2024
https://doi.org/10.12688/f1000research.138294.2
Systematic Review metrics
Revised
An Assessment of Contemporary Methods and Data-Enabled Approaches for Early Cataract Detection
[version 2; peer review: 1 approved with reservations]
Peer Reviewers Abdullah Alamoodi
LATEST VERSION PUBLISHED 02 Aug 2024
https://doi.org/10.12688/f1000research.55370.3
Software Tool Article metrics
Revised
UKB.COVID19: an R package for UK Biobank COVID-19 data processing and analysis
[version 3; peer review: 2 approved, 1 not approved]
Peer Reviewers Thomas Michael Palmer; Virginia Valeria and Annalisa De Silvestri; Edgar Gonzalez-Kozlova
  • Funder
  • Australian Government National Health and Medical Research Council (NHMRC)
LATEST VERSION PUBLISHED 26 Jul 2024
https://doi.org/10.12688/f1000research.139356.2
Research Article metrics
Revised
Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric
[version 2; peer review: 3 approved]
Peer Reviewers Paul Zaharias; Xianzhao Kan; Anthony K. Redmond
  • Funders
  • Norges Forskningsråd
  • Norwegian Metacenter for Computational Science
LATEST VERSION PUBLISHED 10 Jul 2024
https://doi.org/10.12688/f1000research.122924.2
Software Tool Article metrics
Revised
Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics
[version 2; peer review: 2 approved, 2 approved with reservations]
Peer Reviewers Justin M. Wozniak; Iacopo Colonnelli; Denis Yuen; Stephen R. Piccolo
  • Funders
  • JSPS KAKENHI
  • Ministry of Education, Culture, Sports, Science, and Technology (MEXT) of Japan
  • Japan Science and Technology Agency
LATEST VERSION PUBLISHED 24 Jun 2024
https://doi.org/10.12688/f1000research.149494.1
Software Tool Article metrics
sSNAPPY: an R/Bioconductor package for single-sample directional pathway perturbation analysis
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Dario Strbenac; Panagiotis Moulos
  • Funders
  • National Health and Medical Research Council
  • National Breast Cancer Foundation
PUBLISHED 13 Jun 2024
https://doi.org/10.12688/f1000research.123984.2
Research Article metrics
Revised
A potential role of arcadia in conditioned media - umbilical cord derived mesenchymal stem cell on  cartilage repair
[version 2; peer review: 1 approved with reservations, 3 not approved]
Peer Reviewers William Mark Erwin; Girish Pattappa; Rajesh Ramasamy; Jeanne Adiwinata Pawitan
LATEST VERSION PUBLISHED 06 Jun 2024
https://doi.org/10.12688/f1000research.126734.2
Opinion Article metrics
Revised
Systems Biology in ELIXIR: modelling in the spotlight
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Yoram Vodovotz; Herbert Sauro; Ioannis Androulakis
  • Funder
  • EPAnEk-NSRF
LATEST VERSION PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.149577.1
Research Article metrics
Easing genomic surveillance: A comprehensive performance evaluation of long-read assemblers across multi-strain mixture data of HIV-1 and Other pathogenic viruses for constructing a user-friendly bioinformatic pipeline
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Udom Sae-Ueng; Rujira Chaysiri; Sira Sriswasdi
  • Funders
  • The Health Systems Research Institute, Thailand
  • The Faculty of Medicine Research Fund, Chiang Mai University,
PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.135164.2
Method Article metrics
Revised
On the limits of inferring biophysical parameters of RBP-RNA interactions from in vitro RNA Bind’n Seq data
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Peer Reviewers Johannes Söding; Jun Zhang; Junbai Wang; Andreas Schlundt
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 29 May 2024
https://doi.org/10.12688/f1000research.134798.2
Software Tool Article metrics
Revised
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
[version 2; peer review: 1 approved, 3 approved with reservations]
Peer Reviewers Timothy Read and Robert Petit III; Jonas Coelho Kasmanas; Intikhab Alam; Emma Griffiths
  • Funders
  • Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean
  • Carlsbergfondet
  • H2020 European Research Council
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek
  • Knut och Alice Wallenbergs Stiftelse
  • National Institutes of Health
  • Carl Tryggers Stiftelse för Vetenskaplig Forskning
  • Deutsche Forschungsgemeinschaft
  • Friedrich-Schiller-Universität Jena
  • Science for Life Laboratory National Sequencing Projects
  • Werner Siemens-Stiftung
  • Max-Planck-Gesellschaft
  • National Science Foundation
  • Leverhulme Trust
  • Svenska Forskningsrådet Formas
  • Science Foundation Ireland-Irish Research Council
  • Science Foundation Ireland Centre for Research Training in Genomics Data Science
  • Università degli Studi di Padova
  • Institut Pasteur
  • H2020 Marie Skłodowska-Curie Actions
LATEST VERSION PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.149237.1
Software Tool Article metrics
ZARP: A user-friendly and versatile RNA-seq analysis workflow
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Silvia Liu; Bo Li
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • National Center of Competence in Research RNA & Disease
PUBLISHED 24 May 2024
https://doi.org/10.12688/f1000research.150049.1
Research Article metrics
Design of SARS-CoV-2 protein S peptides recognized by the most frequent HLA alleles in the Moroccan population using an immunoinformatics approach
[version 1; peer review: 1 not approved]
Peer Reviewers Gustavo Fioravanti Vieira
PUBLISHED 20 May 2024
41-60 of 638 ARTICLES
Articles
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