All Research Articles

41-60 of 2,028 ARTICLES
https://doi.org/10.12688/f1000research.54195.4
Research Article metrics
Revised
Screening for antifolate and artemisinin resistance in Plasmodium falciparum dried-blood spots from three hospitals of Eritrea
[version 4; peer review: 2 approved]
Peer Reviewers Olusola Ojurongbe; Sam L Nsobya
  • Funders
  • Japan International Cooperation Agency (JICA) – Eritrea
  • Association of African Universities (AAU)
LATEST VERSION PUBLISHED 12 Jun 2024
https://doi.org/10.12688/f1000research.148473.1
Genome Note metrics
The first complete mitochondrional genome of Anopheles gibbinsi using a skimming sequencing approach.
[version 1; peer review: 3 approved]
Peer Reviewers Nicola Zadra; Luke Ambrose; Alexey Makunin
  • Funders
  • Johns Hopkins Malaria Research Institute
  • NIH T32 Training Grant
  • NSF-Accelerator Project D-688: Computing the Biome
  • NIH Southern and Central Africa International Centers of Excellence for Malaria Research
PUBLISHED 30 May 2024
https://doi.org/10.12688/f1000research.130043.3
Research Article metrics
Revised
The identification of retro-DNAs in primate genomes as DNA transposons mobilizing via retrotransposition
[version 3; peer review: 2 approved]
Peer Reviewers Rene Massimiliano Marsano; Shengjun Tan
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ontario Research Foundation
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 29 May 2024
https://doi.org/10.12688/f1000research.134798.2
Software Tool Article metrics
Revised
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
[version 2; peer review: 1 approved, 3 approved with reservations]
Peer Reviewers Timothy Read and Robert Petit III; Jonas Coelho Kasmanas; Intikhab Alam; Emma Griffiths
  • Funders
  • Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean
  • Carlsbergfondet
  • H2020 European Research Council
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek
  • Knut och Alice Wallenbergs Stiftelse
  • National Institutes of Health
  • Carl Tryggers Stiftelse för Vetenskaplig Forskning
  • Deutsche Forschungsgemeinschaft
  • Friedrich-Schiller-Universität Jena
  • Science for Life Laboratory National Sequencing Projects
  • Werner Siemens-Stiftung
  • Max-Planck-Gesellschaft
  • National Science Foundation
  • Leverhulme Trust
  • Svenska Forskningsrådet Formas
  • Science Foundation Ireland-Irish Research Council
  • Science Foundation Ireland Centre for Research Training in Genomics Data Science
  • Università degli Studi di Padova
  • Institut Pasteur
  • H2020 Marie Skłodowska-Curie Actions
LATEST VERSION PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.145790.2
Genome Note metrics
Revised
Re-sequencing of the complete chloroplast genome of Cinnamomum burmanni (Nees & T.Nees) Blume (Lauraceae) from Indonesia using MinION Oxford Nanopore Technologies
[version 2; peer review: 2 approved with reservations]
Peer Reviewers Hoang Dang Khoa Do; Jakub Sawicki
  • Funder
  • National Competitive Basic Research 2022-2023
LATEST VERSION PUBLISHED 21 May 2024
https://doi.org/10.12688/f1000research.145486.1
Research Article metrics
Negligible effects of read trimming on the accuracy of germline short variant calling in the human genome
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Dharma Varapula; Xihao Li and Muqing Zhou
PUBLISHED 17 May 2024
https://doi.org/10.12688/f1000research.53858.2
Software Tool Article metrics
Revised
GARCOM: A user-friendly R package for genetic mutation counts
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Ettore Mosca; Stephen M. Pederson; Tao Wang
  • Funder
  • National Institute of Aging
LATEST VERSION PUBLISHED 17 May 2024
https://doi.org/10.12688/f1000research.133517.3
Research Article metrics
Revised
Exploring the moderating effects of SIRT1 and gene polymorphisms rs7895833 on the relationship between hemoglobin levels and physical frailty in elderly adults with comorbid chronic diseases: A moderated mediation analysis
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Ramu Manjula; Amit Singh; Made Putra Semadhi
  • Funder
  • Universitas Sumatera Utara
LATEST VERSION PUBLISHED 08 May 2024
https://doi.org/10.12688/f1000research.147108.1
Research Article metrics
A bibliometric analysis of the literature on goat breeding 
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Glafiro Torres-Hernández and Jorge A. Maldonado-Jáquez; Nelly Kichamu
  • Funder
  • University of Limpopo granted the Open Access fees for this publication.
PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.124059.2
Software Tool Article metrics
Revised
LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies
[version 2; peer review: 2 approved]
Peer Reviewers Adam Frankish; Mark Borodovsky
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 Apr 2024
https://doi.org/10.12688/f1000research.144007.1
Genome Note metrics
Isolation and complete genome sequence of Aeromonas bacteriophage Gekk3-15
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Ruben Avendaño-Herrera; Ben Temperton and Liam Boot-Handford; Reham M El Tarabili
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 24 Apr 2024
https://doi.org/10.12688/f1000research.110605.1
Review metrics
A review of common methods used in the analysis of human microbiome sequencing data
[version 1; peer review: 1 approved, 1 not approved]
Peer Reviewers Yi-Juan Hu; Christopher A. Lowry
  • Funder
  • National Human Genome Research Institute
PUBLISHED 23 Apr 2024
https://doi.org/10.12688/f1000research.144155.1
Genome Note metrics
Long-read datasets of Kayu Bawang (Azadirachta excelsa (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Hoang Dang Khoa Do; Maria Stefanie Dwiyanti
  • Funder
  • Beasiswa Pendidikan Pascasarjana Dalam Negeri (BPPDN) 2019
PUBLISHED 05 Apr 2024
https://doi.org/10.12688/f1000research.140403.2
Brief Report metrics
Revised
Methylation risk score in peripheral blood predictive of conversion from mild cognitive impairment to Alzheimer's Disease
[version 2; peer review: 2 approved with reservations, 1 not approved]
Peer Reviewers Adam Smith; Rachel Cavill; Lily Wang and Wei Zhang
  • Funder
  • National Heart, Lung, and Blood Institute
LATEST VERSION PUBLISHED 15 Mar 2024
https://doi.org/10.12688/f1000research.19416.2
Research Article metrics
Revised
Human TP53 gene polymorphisms among patients with Hepatocellular carcinoma and chronic hepatitis B infection in Kenya
[version 2; peer review: 3 approved with reservations]
Peer Reviewers Lamech Mwapagha; Harris Onywera; Menat Allah Ali Shaaban
  • Funder
  • Kenya Medical Research Institute
LATEST VERSION PUBLISHED 12 Mar 2024
https://doi.org/10.12688/f1000research.138436.2
Research Article metrics
Revised
Analysis of C9orf72 repeat expansions in Georgian patients with Amyotrophic lateral sclerosis (ALS)
[version 2; peer review: 2 approved]
Peer Reviewers Karri Kaivola; Naoki Suzuki
  • Funders
  • Synaptopathies Strategic Award
  • Wellcome
  • Medical Research Council
LATEST VERSION PUBLISHED 06 Mar 2024
https://doi.org/10.12688/f1000research.140233.1
Systematic Review metrics
Association between angiotensin-converting enzyme (ACE) gene I/D polymorphism with the risk of knee OA: A systematic review, meta-analysis, and meta-regression
[version 1; peer review: 2 approved]
Peer Reviewers Nata Pratama Hardjo Lugito; Yoyos Dias Ismiarto
PUBLISHED 26 Feb 2024
https://doi.org/10.12688/f1000research.134641.3
Research Article metrics
Revised
Prevalence of Panton-Valentine leucocidin (pvl) and exfoliative toxin A (eta) gene within methicillin resistant and susceptible Staphylococcus aureus in an urban tertiary hospital: A molecular epidemiology pilot study
[version 3; peer review: 2 approved]
Peer Reviewers Dewi Santosaningsih; Amin Soebandrio
  • Funder
  • Universitas Sumatera Utara TALENTA
LATEST VERSION PUBLISHED 22 Feb 2024
https://doi.org/10.12688/f1000research.138150.3
Genome Note metrics
Revised
Plastid genome of Passiflora tripartita var. mollissima (poro-poro) from Huánuco, Peru
[version 3; peer review: 2 approved]
Peer Reviewers Rahul G Shelke; Abdullah Abdullah
  • Funder
  • Plant Sience Laboratory
LATEST VERSION PUBLISHED 19 Feb 2024
https://doi.org/10.12688/f1000research.141786.2
Review metrics
Revised
Models for the retention of duplicate genes and their biological underpinnings
[version 2; peer review: 2 approved]
Peer Reviewers Nadia El-Mabrouk; Arturo Becerra
LATEST VERSION PUBLISHED 12 Feb 2024
41-60 of 2,028 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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