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https://doi.org/10.12688/f1000research.127469.2
Brief Report metrics
Revised
The number of neutral mutants in an expanding Luria-Delbrück population is approximately Fréchet
[version 2; peer review: 2 approved]
Steven A. Frank
Peer Reviewers Qi Zheng; Pavol Bokes
  • Funders
  • U.S. Department of Defense
  • National Science Foundation
  • Donald Bren Foundation
LATEST VERSION PUBLISHED 03 Mar 2023
https://doi.org/10.12688/f1000research.18656.3
Data Note metrics
Revised
On the design of linked datasets mapping networks of collaboration in the genomic sequencing of Saccharomyces cerevisiae, Homo sapiens, and Sus scrofa
[version 3; peer review: 2 approved]
Mark Wong, Rhodri Leng
Peer Reviewers Rachel Ankeny; Jake Lever
  • Funder
  • European Research Council
LATEST VERSION PUBLISHED 28 Feb 2023
https://doi.org/10.12688/f1000research.109136.2
Research Article metrics
Revised
Genomic profiles of Indonesian colorectal cancer patients
[version 2; peer review: 2 approved]
Murdani Abdullah, Sofy Meilany, Hidayat Trimarsanto, Safarina G. Malik, Ninik Sukartini, Firhat Idrus, Saskia A. Nursyirwan, Virly N. Muzellina, Rabbinu R. Pribadi, Amanda P. Utari, Hasan Maulahela, Ari F. Syam
Peer Reviewers Ahmad Rusdan Handoyo Utomo; Wei Zhang
  • Funder
  • Indonesian Ministry of Research, Technology, and Higher Education through the World Class Research (WCR) 2019 Program
LATEST VERSION PUBLISHED 21 Feb 2023
https://doi.org/10.12688/f1000research.130615.1
Research Article metrics
Genome-wide comparisons reveal broad variations in intraspecific SNP frequencies among species in Agaricomycetes, Basidiomycota
[version 1; peer review: 1 approved]
Kuan Zhao, Jianping Xu
Peer Reviewers Alexandra Dallaire
  • Funders
  • Natural Science Foundation of Jiangxi Province, China
  • Natural Sciences and Engineering Research Council of Canada
  • National Natural Science Foundation of China
PUBLISHED 20 Feb 2023
https://doi.org/10.12688/f1000research.129413.1
Genome Note metrics
The complete mitochondrial genome of the hybrid snow crab Chionoecetes opilio (♀) × C. japonicus (♂) (Crustacea: Decapoda: Majoidea) and its phylogenetic analysis
[version 1; peer review: 1 approved, 1 approved with reservations]
Bong Han Yun, Yong Hwi Kim, Ho-Seop Han, Hye Jin Kim, Jong Yeon Park, In-Chul Bang
Peer Reviewers Jongwoo Jung; Christopher M Austin
  • Funders
  • Soonchunhyang University
  • Ministry of Oceans and Fisheries
PUBLISHED 20 Feb 2023
https://doi.org/10.12688/f1000research.26464.2
Research Article metrics
Revised
First report on molecular identification of Fusarium species causing fruit rot of mandarin (Citrus reticulata) in Bangladesh
[version 2; peer review: 2 approved]
Mohammed Faruk Hasan, Mohammed Asadul Islam, Biswanath Sikdar
Peer Reviewers Shuvra Kanti Dey; Barbara Sawicka
  • Funder
  • Ministry of Science and Technology, Government of the People’s Republic of Bangladesh
LATEST VERSION PUBLISHED 15 Feb 2023
https://doi.org/10.12688/f1000research.126840.2
Software Tool Article metrics
Revised
Gene expression data visualization tool on the o²S²PARC platform
[version 2; peer review: 2 approved]
Hiba Ben Aribi, Mengyuan Ding, Anmol Kiran
Peer Reviewers Joost B. M. Wagenaar; Esra Neufeld
LATEST VERSION PUBLISHED 06 Feb 2023
https://doi.org/10.12688/f1000research.126829.1
Systematic Review metrics
Genome-wide association studies (GWAS) for orthopedic diseases: a systematic review
[version 1; peer review: 1 approved with reservations, 1 not approved]
Mir Sadat-Ali
Peer Reviewers Mehdi Momen; Serra Kaya
PUBLISHED 30 Jan 2023
https://doi.org/10.12688/f1000research.128621.1
Research Article metrics
Sepsis decreases lung SVEP1 expression in a murine model
[version 1; peer review: 1 approved with reservations, 2 not approved]
Takeo Kurita, Takehiko Oami, Lisa Fujimura, Akemi Sakamoto, Ryoko Sato-Nishiuchi, Kiyotoshi Sekiguchi, Masahiko Hatano, Taka-aki Nakada
Peer Reviewers Jared S Elenbaas and Ved Patel; Gavin E Morris; Thorsten Kessler
  • Funder
  • Grants-in-Aid for Scientific Research from the Japan Society for the Promotion of Science.
PUBLISHED 19 Jan 2023
https://doi.org/10.12688/f1000research.122437.2
Research Article metrics
Revised
Genomic prediction in plants: opportunities for ensemble machine learning based approaches
[version 2; peer review: 1 approved, 2 approved with reservations]
Muhammad Farooq, Aalt D.J. van Dijk, Harm Nijveen, Shahid Mansoor, Dick de Ridder
Peer Reviewers Muhammad Tehseen Azhar; Miguel Pérez-Enciso; Yongkang Kim
  • Funder
  • Wageningen University and Research
LATEST VERSION PUBLISHED 10 Jan 2023
https://doi.org/10.12688/f1000research.110492.2
Research Article metrics
Revised
From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)
[version 2; peer review: 2 approved]
Maksim Nesterenko, Aleksei Miroliubov
Peer Reviewers Andreas Hejnol and Ferenc Kagan; Viatcheslav Ivanenko
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.122306.1
Research Article metrics
Novel Helicobacter pylori-associated hemolysis Hp0499 and Hp1490 and its association with severity of gastritis
[version 1; peer review: 1 approved with reservations]
Sang Ketut Widiana, Titong Sugihartono, Dalla Doohan, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Adi Wasis Prakosa, Ricky Indra Alfaray, Camilia Metadea Aji Safitri, Rizki Amalia, Yoshio Yamaoka, Muhammad Miftahussurur
Peer Reviewers I Ketut Mariadi
  • Funder
  • Dr.Soetomo Teaching Hospital, Surabaya, Indonesia.
PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.128446.1
Research Article metrics
Genetic mapping and pedigree analysis of non-syndromic congenital deafness in Surabaya, Indonesia
[version 1; peer review: 1 approved with reservations, 2 not approved]
Nyilo Purnami, Hamam Kusumagani, Puguh Setyo Nugroho, Zakiyatul Faizah, In Seok Moon
Peer Reviewers Arunachalam Iyer; Elvis Twumasi Aboagye; Adebolajo Adeyemo
  • Funder
  • Universitas Airlangga
PUBLISHED 05 Jan 2023
https://doi.org/10.12688/f1000research.128842.1
Research Article metrics AWAITING PEER REVIEW
Association between polymorphisms within the gene coding for tumor necrosis factor (TNF)-alpha with outcomes of treatment in a sample of Iraqi patients with ankylosing spondylitis taking etanercept: an observational study
[version 1; peer review: awaiting peer review]
Shaimaa Saleh Khudhur, Eman Saadi Saleh, Mohammed Hadi Alosami, Laith G. Shareef
Peer Reviewers Invited
PUBLISHED 23 Dec 2022
https://doi.org/10.12688/f1000research.127935.1
Genome Note metrics
Draft genome of a clinical Pseudomonas qingdaonensis isolate from a hospitalized patient at Kenyatta National Hospital, Kenya
[version 1; peer review: 2 approved]
Brian Ogoti, Racheal Gachogo, Frank Onyambu
Peer Reviewers Gerald Mboowa; Aquillah Kanzi
  • Funder
  • Center of Molecular Biosciences
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.129212.1
Genome Note metrics
An updated version of the Madagascar periwinkle genome
[version 1; peer review: 2 approved]
Clément Cuello, Emily Amor Stander, Hans J. Jansen, Thomas Dugé De Bernonville, Audrey Oudin, Caroline Birer Williams, Arnaud Lanoue, Nathalie Giglioli Guivarc'h, Nicolas Papon, Ron P. Dirks, Michael Krogh Jensen, Sarah Ellen O'Connor, Sébastien Besseau, Vincent Courdavault
Peer Reviewers Evangelos Tatsis; Amit Rai
  • Funders
  • ARD CVL Biopharmaceutical program of the Région Centre-Val de Loire
  • Agence Nationale de la Recherche
  • Horizon 2020
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.128354.1
Method Article metrics
BOREALIS: an R/Bioconductor package to detect outlier methylation from bisulfite sequencing data
[version 1; peer review: 2 approved with reservations]
Gavin R. Oliver, W. Garrett Jenkinson, Rory J. Olson, Laura E. Schultz-Rogers, Eric W. Klee
Peer Reviewers Philipp Jurmeister and Maximilian Leitheiser; Vicente Yepez
  • Funder
  • Center for Individualized Medicine, Mayo Clinic
PUBLISHED 20 Dec 2022
https://doi.org/10.12688/f1000research.128391.1
Research Article metrics
Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
[version 1; peer review: 2 not approved]
Shyaron Poudel, Brett Hale, Asela J. Wijeratne
Peer Reviewers Aaron John Stevens; Sadaruddin Chachar
  • Funders
  • Arkansas State University
  • Arkansas Biosciences Institute
PUBLISHED 07 Dec 2022
https://doi.org/10.12688/f1000research.110472.3
Research Article metrics
Revised
IL1B gene variants, but not TNF, CXCL8, IL6 and IL10, modify the course of cystic fibrosis in Polish patients.
[version 3; peer review: 1 approved, 2 approved with reservations]
Oliwia Zakerska-Banaszak, Joanna Gozdzik-Spychalska, Marcin Gabryel, Joanna Zuraszek, Marzena Skrzypczak-Zielinska, Ryszard Slomski, Agnieszka Dobrowolska, Tomasz Piorunek, Halina Batura-Gabryel
Peer Reviewers Tadeusz Przybyłowski; Daniel J. Smith; Agnieszka Swiatecka-Urban
  • Funder
  • Grant for young scientists from the Poznan Medical University
LATEST VERSION PUBLISHED 22 Nov 2022
https://doi.org/10.12688/f1000research.124719.1
Genome Note metrics
Inference of a genome-wide protein-coding gene set of the inshore hagfish Eptatretus burgeri
[version 1; peer review: 2 approved with reservations]
Osamu Nishimura, Kazuaki Yamaguchi, Yuichiro Hara, Kaori Tatsumi, Jeramiah J Smith, Mitsutaka Kadota, Shigehiro Kuraku
Peer Reviewers Vincent Laudet; Daniel Ocampo Daza
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • Japan Society for the Promotion of Science
  • National Science Foundation
PUBLISHED 08 Nov 2022
101-120 of 2,028 ARTICLES
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