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https://doi.org/10.12688/f1000research.168810.1
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CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
[version 1; peer review: 1 not approved]
William Choi-Kim, Sayed-Rzgar Hosseini
Peer Reviewers Florian van daalen
  • Funder
  • STPRZG
PUBLISHED 29 Aug 2025
https://doi.org/10.12688/f1000research.162460.2
Research Article metrics
Revised
Prevalence of Candida albicans in the oral cavity of Beta Thalassemia Major and Thalassemia Minor Patients
[version 2; peer review: 2 approved]
Saba Sami Abd Al Wahab, Maha Adel Mahmood
Peer Reviewers Anwer Faisal; Pradana Zaky Romadhon
LATEST VERSION PUBLISHED 21 Aug 2025
https://doi.org/10.12688/f1000research.163662.2
Research Article metrics
Revised
Health Security inequalities in Non-EU European Countries: A Cross-National Comparative Assessment Using an Integrated MCDM-Machine Learning Approach
[version 2; peer review: 2 approved]
Mijahed Nasser Aljober, Adel A. Nasser, Abed Saif Ahmed Alghawli, Amani A. K. Elsayed
Peer Reviewers Shaimaa Awadh Baha al_Deen; Mohammed S. Abdo
  • Funder
  • Deanship of Scientific Research, Prince Sattam bin Abdulaziz University
LATEST VERSION PUBLISHED 19 Aug 2025
https://doi.org/10.12688/f1000research.164432.1
Case Report metrics
Case Report: Methamphetamine overdose causing ileal perforation
[version 1; peer review: 1 not approved]
Anupam K. Gupta, Samuel Feinberg, Anudeep Surendranath
Peer Reviewers Lorenzo Gitto
PUBLISHED 15 Aug 2025
https://doi.org/10.12688/f1000research.163596.2
Method Article metrics
Revised
Methodology for generating chorioallantoic membrane patient-derived xenograft (CAM-PDX) models of pleural mesothelioma and performing preclinical imaging for the translation of cancer studies and drug screening.
[version 2; peer review: 2 approved]
Jan Schulze, Sarah Barnett, Liam Shaw, Anne Herrmann, Harish Poptani, Doris M Rassl, Alexander Haragan, Michael Shackcloth, Joseph J Sacco, Judy M Coulson
Peer Reviewers Ulrich Jarry; Stuart A. Clayton
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • North West Cancer Research
LATEST VERSION PUBLISHED 14 Aug 2025
https://doi.org/10.12688/f1000research.164444.1
Research Article metrics
Linezolid-associated optic neuropathy in drug-resistant tuberculosis patients in Sulianti Saroso Infectious Disease Hospital
[version 1; peer review: 1 approved, 1 approved with reservations]
Emilia Setyaadmadja, Yunita Sari, Ardhika Prasetya, Rosamarlina -, Pompini Agustina Sitompul, Adria Rusli, Titi Sundari, Faisal Matondang, Haruyuki Dewi Faisal, Siti Maemun
Peer Reviewers Gyanshankar Mishra; Zen Ahmad
  • Funder
  • No
PUBLISHED 13 Aug 2025
https://doi.org/10.12688/f1000research.167153.1
Research Article metrics
Isolation of Apigenin from Sungkai (Peronema canescens) Leaves and Its Immunomodulatory Effects: An In Vivo Study on Granzyme B, Interferon-γ, and Perforin Expression with Supporting In Silico Analysis
[version 1; peer review: 2 approved, 2 approved with reservations]
Dwisari Dillasamola, Yufri Aldi, Najmiatul Fitria, Biomechy Oktomalioputri, Uce Lestari, Risma Multia
Peer Reviewers Dharmalingam Kirubakaran; Valentina Mittova; Bushra Hussain Shnawa; Pitchaporn Wanyo
  • Funder
  • Universitas Andalas
PUBLISHED 08 Aug 2025
https://doi.org/10.12688/f1000research.166852.1
Systematic Review metrics
Greenspace exposure and associated health outcomes: an updated systematic review of reviews
[version 1; peer review: 3 approved with reservations]
Brittnee Bryer, Nicholas J Osborne, Jialu Wang, Rajarshi Dasgupta, Gail Williams, Darsy Darssan
Peer Reviewers David Rojas-Rueda; Mingwei Liu; Anna Soerensen
PUBLISHED 24 Jul 2025
https://doi.org/10.12688/f1000research.139476.2
Research Article metrics
Revised
Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains
[version 2; peer review: 2 approved, 2 approved with reservations]
Shervin Goudarzi, Meghana Pagadala, Adam Klie, James V Talwar, Hannah Carter
Peer Reviewers Charu Mehta; Chiara Herzog; Busra Unal; Kosuke Yamaguchi
  • Funders
  • National Institutes of Health, National Cancer Institute
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 24 Jul 2025
https://doi.org/10.12688/f1000research.166880.1
Research Article metrics
The Relation of Seminal Cell-Free DNA and Total Antioxidant Capacity with  Intracytoplasmic Sperm Injection Outcomes in Iraqi Infertile men
[version 1; peer review: 1 approved]
Hadeer S. Al- Shammary, Hanan L. Al-Omary
Peer Reviewers Siti Maulida
  • Funder
  • No funding
PUBLISHED 22 Jul 2025
https://doi.org/10.12688/f1000research.152489.3
Research Article metrics
Revised
Can indoor plants reduce formaldehyde levels in the anatomy dissection hall? A study to evaluate the practicality of using plants in reducing formaldehyde levels
[version 3; peer review: 2 approved, 2 approved with reservations]
Adish G Joshi, Dhiren Punja, Rohini Punja
Peer Reviewers Kumar Satish Ravi; Ranganath Vallabhajosyula; Yasar Sajjad; Choy Ker Woon
LATEST VERSION PUBLISHED 22 Jul 2025
https://doi.org/10.12688/f1000research.164798.1
Systematic Review metrics
THE PROTECTIVE ROLE OF FLAVONOIDS IN AMNESIA -SYSTEMATIC REVIEW
[version 1; peer review: 2 approved, 1 approved with reservations]
Regan Mujinya, Swase Dominic Terkimbi, Victor Otu Oka, Monday Etukudo Ekon, Makena Wusa, Elna Owembabazi, Patrick Aja Maduabuchi, Daniel Udofia Owu
Peer Reviewers Zeenath Banu; Rajwinder Kaur; Yujun Hou
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.163436.1
Research Article metrics
Effects of Flunitrazepam Drug on the Decomposition Process of Pigs Liver in PMI Determination: A Histopathology Perspective
[version 1; peer review: 1 approved]
Daniel Gachuiri Njau, Edward K. Muge, Peter W. Kinyanjui, James M. Mbaria, John K. Kiai, Nichodemus M. Kamuti, Peter K. Gathumbi
Peer Reviewers Ucu Julita
PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.161391.2
Systematic Review metrics
Revised
Evaluation of external vs. internal focus of attention in Parkinson's disease: A systematic review and meta-analysis during on and off medication states
[version 2; peer review: 1 approved]
Maël Krieg, Gaël Christen, Manon Tschopp, Katia Giacomino, Michela Bassolino, Karl Sattelmayer
Peer Reviewers Sachchida Rai and Payal Singh
LATEST VERSION PUBLISHED 21 Jul 2025
https://doi.org/10.12688/f1000research.166855.1
Software Tool Article metrics
KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
[version 1; peer review: 1 approved with reservations]
Satya N.V Arjunan, Anton Shpak, George W. Parker, Adam P. Hill
Peer Reviewers Amelia S Power and Amanda Groenewald
  • Funders
  • Targeted Translation Research Accelerator
  • New South Wales Office for Health and Medical Research
PUBLISHED 17 Jul 2025
https://doi.org/10.12688/f1000research.166660.1
Systematic Review metrics AWAITING PEER REVIEW
Association Between Angiotensin Converting Enzyme Insertion / Deletion Genotypes and Diabetic Nephropathy Defined by Urinary Albumin-to-Creatinine Ratio: A Systematic Review and Meta-Analysis
[version 1; peer review: awaiting peer review]
Ritah Kiconco, Robert Kalyesubula, Jazira Tumusiime, Raymond Atwine, Charles Nkubi Bagenda, Simon Peter Rugera, Bosco Bekiita Agaba, Erick Nyakundi Ondari, Deusdedit Tusubira, Martha Lyaka, Moses Ocan, Alison Annet Kinengyere, Ekwaro A. Obuku, Gertrude N. Kiwanuka
Peer Reviewers Invited
  • Funder
  • Fogarty International Center
PUBLISHED 17 Jul 2025
https://doi.org/10.12688/f1000research.165525.1
Research Article metrics AWAITING PEER REVIEW
Nourishing the Microbiome: Exploring the influence of Food Inflammatory Index on Gut Bacteria in Type 2 Diabetics in Saudi Arabia
[version 1; peer review: awaiting peer review]
Afnan F. Almuhanna, Rudaynah Alali, Abdulmohsen H. Al Eleq, Waleed I. Albaker, Fatima A. Alrubaish, Jana M. alsaif, Chittibabu Vatte, Cyril Cyrus, Bao-Li Loza, Raed M Alsulaiman, Abdulaziz Al-Qurain, Fahad A. Al-Muhanna, Brendan Keating, Amein Al-ali, Alawi Habara
Peer Reviewers Invited
  • Funders
  • King Abdulaziz City for Science and Technology grants .
  • Rawabi Scientific Chair for Regenerative & Precision Medicine, Imam Abdulrahman Bin Faisal University, Dammam
PUBLISHED 15 Jul 2025
https://doi.org/10.12688/f1000research.151954.2
Research Article metrics
Revised
Absent in Melanoma 2 Gene Associated Periodontitis and Coronary Heart Disease
[version 2; peer review: 1 approved, 2 approved with reservations]
Zina Ali Daily, Batool Hassan Al-Ghurabi
Peer Reviewers Athraa Ali Mahmood; Paras Ahmad; Snophia Suresh
LATEST VERSION PUBLISHED 14 Jul 2025
https://doi.org/10.12688/f1000research.163833.1
Software Tool Article metrics
LitSieve: An integrated literature search and triage tool for biocuration
[version 1; peer review: 1 approved with reservations]
Matt Jeffryes, Melissa Harrison, Henning Hermjakob, Johanna McEntyre
Peer Reviewers Kim Rutherford
  • Funders
  • European Molecular Biology Laboratory
  • HORIZON EUROPE Marie Sklodowska-Curie Actions
PUBLISHED 11 Jul 2025
https://doi.org/10.12688/f1000research.163839.1
Research Article metrics
Amino Acid and Fatty Acid Profiles of Black Soldier Fly Larvae Meal Reared on Rice Bran, Milk Waste, and Slaughterhouse Waste Combined Substrate Under Different Processing Methods
[version 1; peer review: 1 approved with reservations]
Nurul Isnaini, Faizal Andri
Peer Reviewers pria sembada
  • Funder
  • Directorate of Research and Community Services, Universitas Brawijaya, Malang 65145, Indonesia
PUBLISHED 08 Jul 2025
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