Cell & Molecular Biology

Cell & Molecular Biology

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201-220 of 263 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.109251.1
Brief Report metrics
Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing
[version 1; peer review: 2 approved]
Andrew W. Liu, Alejandro Villar-Briones, Nicholas M. Luscombe, Charles Plessy
Peer Reviewers Genki N. Kanda; Shan Wei
  • Funder
  • Japan Society for the Promotion of Science
PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.94159.1
Software Tool Article metrics
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.28352.2
Method Article metrics
Revised
Methods for sequencing the pandemic: benefits of rapid or high-throughput processing
[version 2; peer review: 2 approved]
Megan L. Folkerts, Darrin Lemmer, Ashlyn Pfeiffer, Danielle Vasquez, Chris French, Amber Jones, Marjorie Nguyen, Brendan Larsen, W. Tanner Porter, Krystal Sheridan, Jolene R. Bowers, David M. Engelthaler
Peer Reviewers Bronwyn MacInnis; Keith Crandall
  • Funders
  • Arizona Department of Health Services
  • The NARBHA institute
LATEST VERSION PUBLISHED 21 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.27763.2
Brief Report metrics
Revised
Runcer-Necromancer: a method to rescue data from an interrupted run on MGISEQ-2000
[version 2; peer review: 1 approved, 1 approved with reservations]
Anna Pavlova, Vera Belova, Robert Afasizhev, Irina Bulusheva, Denis Rebrikov, Dmitriy Korostin
Peer Reviewers Simon Andrews; Sergey Knyazev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.74570.2
Review metrics
Revised
Contribution of BCR-ABL molecular variants and leukemic stem cells in response and resistance to tyrosine kinase inhibitors: a review
[version 2; peer review: 2 approved]
Mohammad Al Hamad
Peer Reviewers Ala-Eddin Al Moustafa; Pinar Arslan
LATEST VERSION PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.107925.1
Software Tool Article metrics
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks
[version 1; peer review: 2 approved]
Jefferson Daniel Suquilanda-Pesántez, Evelyn Dayana Aguiar Salazar, Diego Almeida-Galárraga, Graciela Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño Gomezjurado
Peer Reviewers Juan Onofre Orozco-López; Lorena Isabel Barona López
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.28225.2
Research Article metrics
Revised
Human Proteinase 3, an important autoantigen of c-ANCA associated vasculitis, shares cross-reactive epitopes with serine protease allergens from mites: an in silico analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Emiro Buendía, Múnera Marlon, Orlando Parra, María Sánchez, Andrés Sánchez, Jorge Sánchez, Diego Viasus
Peer Reviewers Chandrabose Selvaraj; Tomas Erban; Hiroshi Tanaka
  • Funder
  • Fondo Nacional de Financiamiento para la Ciencia, la Tecnología y la Innovación
LATEST VERSION PUBLISHED 03 Feb 2022
https://doi.org/10.12688/f1000research.108489.1
Research Article metrics
Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly.
[version 1; peer review: 2 approved with reservations]
Raquel Linheiro, John Archer
Peer Reviewers Ben J. Mans; Kun Lu Lu
  • Funder
  • Fundacão para a Ciência e a Tecnologia (FCT)
PUBLISHED 31 Jan 2022
https://doi.org/10.12688/f1000research.74254.1
Brief Report metrics
DNA barcoding for the discrimination of Uncaria gambir and its closely related species using internal transcribed spacer genes
[version 1; peer review: 1 approved with reservations, 1 not approved]
Epi Supri Wardi, Sumaryati Syukur, Zulkarnain Chaidir, Jamsari Jamsari, Bastian Nova
Peer Reviewers Jarrett Phillips; Andrey Yurkov
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
PUBLISHED 27 Jan 2022
https://doi.org/10.12688/f1000research.51900.2
Software Tool Article metrics
Revised
ContactJ: Characterization of lipid droplet-mitochondrial contacts using fluorescence microscopy and image analysis
[version 2; peer review: 2 approved]
Gemma Martín, Marta Bosch, Elisenda Coll, Robert G. Parton, Albert Pol, Maria Calvo
Peer Reviewers Mafalda Sousa and Maria Azevedo; Gadea Mata Martinez
  • Funder
  • European Cooperation in Science and Technology
LATEST VERSION PUBLISHED 18 Jan 2022
https://doi.org/10.12688/f1000research.75321.1
Method Article metrics
Improving prediction of core transcription factors for cell reprogramming and transdifferentiation
[version 1; peer review: 2 not approved]
Mikhail Raevskiy, Anna Kondrashina, Yulia Medvedeva
Peer Reviewers Valentiva Boeva and Samuel Gunz; Erdem B. Dashinimaev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 13 Jan 2022
https://doi.org/10.12688/f1000research.73967.2
Case Report metrics
Revised
Case Report: Stem cell therapy in amyotrophic lateral sclerosis
[version 2; peer review: 2 approved]
Ala'a A. Hassan, Jeananne Elkins, Hisham Y. Hassan
Peer Reviewers Dr. Julie Sprakel; Ebrahim Rajab
LATEST VERSION PUBLISHED 10 Jan 2022
https://doi.org/10.12688/f1000research.73497.2
Method Article metrics
Revised
Reducing sources of variance in experimental procedures in in vitro research
[version 2; peer review: 2 approved]
Igor Fischer, Maria Victoria Martinez-Dominguez, Daniel Hänggi, Ulf Kahlert
Peer Reviewers Kapil Dave; Piotr Walczak
  • Funder
  • VolkswagenStiftung
LATEST VERSION PUBLISHED 07 Jan 2022
https://doi.org/10.12688/f1000research.26128.2
Method Article metrics
Revised
Space-log: a novel approach to inferring gene-gene net-works using SPACE model with log penalty
[version 2; peer review: 2 approved, 1 approved with reservations]
Qian (Vicky) Wu, Wei Sun, Li Hsu
Peer Reviewers Yuying Xie and Yuning Hao; Chi Song; Jessie Jeng
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 05 Jan 2022
https://doi.org/10.12688/f1000research.74836.1
Method Article metrics
Slinker: Visualising novel splicing events in RNA-Seq data
[version 1; peer review: 3 approved]
Breon Schmidt, Marek Cmero, Paul Ekert, Nadia Davidson, Alicia Oshlack
Peer Reviewers George Wiggins; Stephen Montgomery; Amy Huei-Yi Lee
  • Funder
  • NHMRC
PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.27915.4
Research Article metrics
Revised
Enhancement of pyocyanin production by subinhibitory concentration of royal jelly in Pseudomonas aeruginosa
[version 4; peer review: 3 approved, 1 approved with reservations]
Dina Auliya Amly, Puspita Hajardhini, Alma Linggar Jonarta, Heribertus Dedy Kusuma Yulianto, Heni Susilowati
Peer Reviewers Ariadna A. Djais; Theerthankar Das; Shizuo Kayama; Philip S. Bird
  • Funder
  • Ministry of Research, Technology and Higher Education, Republic of Indonesia
LATEST VERSION PUBLISHED 07 Dec 2021
https://doi.org/10.12688/f1000research.29991.4
Research Article metrics
Revised
Molecular Detection of Sapovirus in Children Under Five Years with Acute Gastroenteritis in Mansoura, Egypt between January 2019 and February 2020
[version 4; peer review: 2 approved]
Maysaa El Sayed Zaki, Raghdaa Shrief, Rasha H. Hassan
Peer Reviewers Marta Diez Valcarce; Nicola A. Page
LATEST VERSION PUBLISHED 24 Nov 2021
https://doi.org/10.12688/f1000research.73641.1
Software Tool Article metrics
PlotXpress, a webtool for normalization and visualization of reporter expression data
[version 1; peer review: 3 approved]
Elias Brandorff, Marc Galland, Joachim Goedhart
Peer Reviewers Lorena Pantano Rubino; Guillaume Jacquemet; Vincent J. Lynch
PUBLISHED 08 Nov 2021
https://doi.org/10.12688/f1000research.74169.1
Genome Note metrics
Isolation and sequencing of three RB49-like bacteriophages infecting O antigen-producing E. coli strains
[version 1; peer review: 1 approved, 1 approved with reservations]
Alexander Efimov, Eugene Kulikov, Alla Golomidova, Ilya Belalov, Vladislav Babenko, Andrey Letarov
Peer Reviewers Marcin Los; Mikael Skurnik
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation, WCSC
PUBLISHED 03 Nov 2021
201-220 of 263 ARTICLES
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