Cell & Molecular Biology

Cell & Molecular Biology

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201-220 of 273 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.51018.2
Brief Report metrics
Revised
Overlap of vitamin A and vitamin D target genes with CAKUT-related processes
[version 2; peer review: 2 approved, 2 approved with reservations]
Ozan Ozisik, Friederike Ehrhart, Chris T. Evelo, Alberto Mantovani, Anaı̈s Baudot
Peer Reviewers Elena Menegola; Matias Simons; Olivia Angelin-Bonnet; Sean Eddy
  • Funders
  • Horizon 2020
  • The Excellence Initiative of Aix-Marseille University - A*Midex
LATEST VERSION PUBLISHED 21 Apr 2022
https://doi.org/10.12688/f1000research.110936.1
Research Article metrics
TReNCo: Topologically associating domain (TAD) aware regulatory network construction
[version 1; peer review: 2 not approved]
Christopher Bennett, Viren Amin, Daehwan Kim, Murat Can Cobanoglu, Venkat Malladi
Peer Reviewers Junbai Wang; Sonika Tyagi
  • Funders
  • National Institute of General Medical Sciences
  • Cancer Prevention and Research Institute of Texas
PUBLISHED 14 Apr 2022
https://doi.org/10.12688/f1000research.76154.1
Software Tool Article metrics
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
[version 1; peer review: 2 approved with reservations]
Jacob Hanimann, Holger Moch, Martin Zoche, Abdullah Kahraman
Peer Reviewers James D Stephenson; Laurens van de Wiel
PUBLISHED 31 Mar 2022
https://doi.org/10.12688/f1000research.76191.2
Research Article metrics
Revised
Sulfiredoxin-1 blood mRNA expression levels negatively correlate with hippocampal atrophy and cognitive decline
[version 2; peer review: 2 approved]
Catalina Anca Cucos, Ioana Cracana, Maria Dobre, Bogdan Ovidiu Popescu, Catalina Tudose, Luiza Spiru, Gina Manda, Gabriela Niculescu, Elena Milanesi
Peer Reviewers David Gurwitz; Sermin Genc
  • Funder
  • Competitiveness Operational Programme
LATEST VERSION PUBLISHED 21 Mar 2022
https://doi.org/10.12688/f1000research.75677.1
Research Article metrics
Design-of-experiments in vitro transcription yield optimization of self-amplifying RNA
[version 1; peer review: 2 approved with reservations]
Karnyart Samnuan, Anna K Blakney, Paul F McKay, Robin J Shattock
Peer Reviewers Rok Sekirnik; Emily Voigt and Devin Brandt
  • Funders
  • European Commission H2020
  • Engineering and Physical Sciences Research Council
PUBLISHED 18 Mar 2022
https://doi.org/10.12688/f1000research.108829.1
Method Article metrics
Efficient embryoid-based method to improve generation of optic vesicles from human induced pluripotent stem cells
[version 1; peer review: 2 approved]
Jonathan Eintracht, Philippa Harding, Dulce Lima Cunha, Mariya Moosajee
Peer Reviewers Magdalene J. Seiler; J. Arjuna Ratnayaka
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • Wellcome Trust
  • Moorfields Eye Charity
PUBLISHED 17 Mar 2022
https://doi.org/10.12688/f1000research.39214.2
Opinion Article metrics
Revised
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing
[version 2; peer review: 1 approved, 2 approved with reservations]
Mauro Petrillo, Marco Fabbri, Dafni Maria Kagkli, Maddalena Querci, Guy Van den Eede, Erik Alm, Derya Aytan-Aktug, Salvador Capella-Gutierrez, Catherine Carrillo, Alessandro Cestaro, Kok-Gan Chan, Teresa Coque, Christoph Endrullat, Ivo Gut, Paul Hammer, Gemma L. Kay, Jean-Yves Madec, Alison E. Mather, Alice Carolyn McHardy, Thierry Naas, Valentina Paracchini, Silke Peter, Arthur Pightling, Barbara Raffael, John Rossen, Etienne Ruppé, Robert Schlaberg, Kevin Vanneste, Lukas M. Weber, Henrik Westh, Alexandre Angers-Loustau
Peer Reviewers Rene Hendriksen; Anna Abramova and Marcus Wenne; Enrico Lavezzo and Emilio Ispano
  • Funders
  • Biotechnology and Biological Sciences Research Counci
  • European Commission
LATEST VERSION PUBLISHED 16 Mar 2022
https://doi.org/10.12688/f1000research.54864.2
Research Article metrics
Revised
The need to reassess single-cell RNA sequencing datasets: the importance of biological sample processing
[version 2; peer review: 2 approved]
Alex M. Ascensión, Marcos J. Araúzo-Bravo, Ander Izeta
Peer Reviewers Xiao Long and Zhujun Li; (Jo) Huiqing Zhou
  • Funders
  • Hezkuntza, Hizkuntza Politika Eta Kultura Saila, Eusko Jaurlaritza
  • Instituto de Salud Carlos III
  • Horizon 2020
  • European Regional Development Fund
LATEST VERSION PUBLISHED 08 Mar 2022
https://doi.org/10.12688/f1000research.109365.1
Research Article metrics
Performance of the T cell senescence markers in predicting the active disease of systemic lupus erythematosus
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Kusworini Handono, Mirza Zaka Pratama, Radiyati Umi Partan, Hani Susianti, Nimas Eka Firdaningrum, Siti Roziah Ria Famuji, Ade Wildan Rizky Fachry, Norma Hanifah Sumarta, Handono Kalim
Peer Reviewers Tak Mao Chan; Giuseppe A Ramirez; Marija Jelusic and Mario Šestan
  • Funder
  • Kementerian Riset dan Teknologi /Badan Riset dan Inovasi Nasional
PUBLISHED 07 Mar 2022
https://doi.org/10.12688/f1000research.108667.2
Review metrics
Revised
COVID-19, Cation Dysmetabolism, Sialic Acid, CD147, ACE2, Viroporins, Hepcidin and Ferroptosis: A Possible Unifying Hypothesis
[version 2; peer review: 2 approved]
Attilio Cavezzi, Roberto Menicagli, Emidio Troiani, Salvatore Corrao
Peer Reviewers Ming Yang; Piotr H. Pawlowski
LATEST VERSION PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.109251.1
Brief Report metrics
Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing
[version 1; peer review: 2 approved]
Andrew W. Liu, Alejandro Villar-Briones, Nicholas M. Luscombe, Charles Plessy
Peer Reviewers Genki N. Kanda; Shan Wei
  • Funder
  • Japan Society for the Promotion of Science
PUBLISHED 28 Feb 2022
https://doi.org/10.12688/f1000research.94159.1
Software Tool Article metrics
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 1; peer review: 2 approved with reservations]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita
  • Funder
  • Innovative Medicines Initiative 2
PUBLISHED 24 Feb 2022
https://doi.org/10.12688/f1000research.28352.2
Method Article metrics
Revised
Methods for sequencing the pandemic: benefits of rapid or high-throughput processing
[version 2; peer review: 2 approved]
Megan L. Folkerts, Darrin Lemmer, Ashlyn Pfeiffer, Danielle Vasquez, Chris French, Amber Jones, Marjorie Nguyen, Brendan Larsen, W. Tanner Porter, Krystal Sheridan, Jolene R. Bowers, David M. Engelthaler
Peer Reviewers Bronwyn MacInnis; Keith Crandall
  • Funders
  • Arizona Department of Health Services
  • The NARBHA institute
LATEST VERSION PUBLISHED 21 Feb 2022
https://doi.org/10.12688/f1000research.75243.1
Software Tool Article metrics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
[version 1; peer review: 2 approved with reservations]
Darisia Moonsamy, Nikki Gentle
Peer Reviewers Fabiola Curion and Luke Zappia; Fangming Xie
  • Funder
  • National Research Foundation
PUBLISHED 15 Feb 2022
https://doi.org/10.12688/f1000research.27763.2
Brief Report metrics
Revised
Runcer-Necromancer: a method to rescue data from an interrupted run on MGISEQ-2000
[version 2; peer review: 1 approved, 1 approved with reservations]
Anna Pavlova, Vera Belova, Robert Afasizhev, Irina Bulusheva, Denis Rebrikov, Dmitriy Korostin
Peer Reviewers Simon Andrews; Sergey Knyazev
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
LATEST VERSION PUBLISHED 14 Feb 2022
https://doi.org/10.12688/f1000research.74570.2
Review metrics
Revised
Contribution of BCR-ABL molecular variants and leukemic stem cells in response and resistance to tyrosine kinase inhibitors: a review
[version 2; peer review: 2 approved]
Mohammad Al Hamad
Peer Reviewers Ala-Eddin Al Moustafa; Pinar Arslan
LATEST VERSION PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.107925.1
Software Tool Article metrics
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks
[version 1; peer review: 2 approved]
Jefferson Daniel Suquilanda-Pesántez, Evelyn Dayana Aguiar Salazar, Diego Almeida-Galárraga, Graciela Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño Gomezjurado
Peer Reviewers Juan Onofre Orozco-López; Lorena Isabel Barona López
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.28225.2
Research Article metrics
Revised
Human Proteinase 3, an important autoantigen of c-ANCA associated vasculitis, shares cross-reactive epitopes with serine protease allergens from mites: an in silico analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Emiro Buendía, Múnera Marlon, Orlando Parra, María Sánchez, Andrés Sánchez, Jorge Sánchez, Diego Viasus
Peer Reviewers Chandrabose Selvaraj; Tomas Erban; Hiroshi Tanaka
  • Funder
  • Fondo Nacional de Financiamiento para la Ciencia, la Tecnología y la Innovación
LATEST VERSION PUBLISHED 03 Feb 2022
https://doi.org/10.12688/f1000research.108489.1
Research Article metrics
Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly.
[version 1; peer review: 2 approved with reservations]
Raquel Linheiro, John Archer
Peer Reviewers Ben J. Mans; Kun Lu Lu
  • Funder
  • Fundacão para a Ciência e a Tecnologia (FCT)
PUBLISHED 31 Jan 2022
https://doi.org/10.12688/f1000research.74254.1
Brief Report metrics
DNA barcoding for the discrimination of Uncaria gambir and its closely related species using internal transcribed spacer genes
[version 1; peer review: 1 approved with reservations, 1 not approved]
Epi Supri Wardi, Sumaryati Syukur, Zulkarnain Chaidir, Jamsari Jamsari, Bastian Nova
Peer Reviewers Jarrett Phillips; Andrey Yurkov
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
PUBLISHED 27 Jan 2022
201-220 of 273 ARTICLES
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