Genomics and Genetics

Genomics and Genetics

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101-120 of 158 ARTICLES
https://doi.org/10.12688/f1000research.128449.1
Case Report metrics
Case Report: Managing Bardet-Biedl syndrome at a tertiary care centre
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Miriam Zacchia; Jean Muller
PUBLISHED 23 Jan 2023
https://doi.org/10.12688/f1000research.129089.1
Opinion Article metrics
Genetic evolution and cellular interactions within the tumour microenvironment determine glioblastoma progression
[version 1; peer review: 1 approved]
Peer Reviewers Dinorah Friedmann-Morvinski
  • Funders
  • Mark Hughes Foundation
  • James N Kirby Foundation
  • BF Foundation
  • Cure Brain Cancer Foundation
  • Charlie Teo Foundation
  • National Health and Medical Research Council
  • Neurosurgical Research Foundation
  • BrainStorm Brain Cancer Research
PUBLISHED 13 Jan 2023
https://doi.org/10.12688/f1000research.122437.2
Research Article metrics
Revised
Genomic prediction in plants: opportunities for ensemble machine learning based approaches
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Muhammad Tehseen Azhar; Miguel Pérez-Enciso; Yongkang Kim
  • Funder
  • Wageningen University and Research
LATEST VERSION PUBLISHED 10 Jan 2023
https://doi.org/10.12688/f1000research.110492.2
Research Article metrics
Revised
From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)
[version 2; peer review: 2 approved]
Peer Reviewers Andreas Hejnol and Ferenc Kagan; Viatcheslav Ivanenko
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.122306.1
Research Article metrics
Novel Helicobacter pylori-associated hemolysis Hp0499 and Hp1490 and its association with severity of gastritis
[version 1; peer review: 1 approved with reservations]
Peer Reviewers I Ketut Mariadi
  • Funder
  • Dr.Soetomo Teaching Hospital, Surabaya, Indonesia.
PUBLISHED 09 Jan 2023
https://doi.org/10.12688/f1000research.128446.1
Research Article metrics
Genetic mapping and pedigree analysis of non-syndromic congenital deafness in Surabaya, Indonesia
[version 1; peer review: 1 approved with reservations, 2 not approved]
Peer Reviewers Arunachalam Iyer; Elvis Twumasi Aboagye; Adebolajo Adeyemo
  • Funder
  • Universitas Airlangga
PUBLISHED 05 Jan 2023
https://doi.org/10.12688/f1000research.128842.1
Research Article metrics AWAITING PEER REVIEW
Association between polymorphisms within the gene coding for tumor necrosis factor (TNF)-alpha with outcomes of treatment in a sample of Iraqi patients with ankylosing spondylitis taking etanercept: an observational study
[version 1; peer review: awaiting peer review]
Peer Reviewers Invited
PUBLISHED 23 Dec 2022
https://doi.org/10.12688/f1000research.127935.1
Genome Note metrics
Draft genome of a clinical Pseudomonas qingdaonensis isolate from a hospitalized patient at Kenyatta National Hospital, Kenya
[version 1; peer review: 2 approved]
Peer Reviewers Gerald Mboowa; Aquillah Kanzi
  • Funder
  • Center of Molecular Biosciences
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.129212.1
Genome Note metrics
An updated version of the Madagascar periwinkle genome
[version 1; peer review: 2 approved]
Peer Reviewers Evangelos Tatsis; Amit Rai
  • Funders
  • ARD CVL Biopharmaceutical program of the Région Centre-Val de Loire
  • Agence Nationale de la Recherche
  • Horizon 2020
PUBLISHED 21 Dec 2022
https://doi.org/10.12688/f1000research.128391.1
Research Article metrics
Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
[version 1; peer review: 2 not approved]
Peer Reviewers Aaron John Stevens; Sadaruddin Chachar
  • Funders
  • Arkansas State University
  • Arkansas Biosciences Institute
PUBLISHED 07 Dec 2022
https://doi.org/10.12688/f1000research.110472.3
Research Article metrics
Revised
IL1B gene variants, but not TNF, CXCL8, IL6 and IL10, modify the course of cystic fibrosis in Polish patients.
[version 3; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Tadeusz Przybyłowski; Daniel J. Smith; Agnieszka Swiatecka-Urban
  • Funder
  • Grant for young scientists from the Poznan Medical University
LATEST VERSION PUBLISHED 22 Nov 2022
https://doi.org/10.12688/f1000research.124719.1
Genome Note metrics
Inference of a genome-wide protein-coding gene set of the inshore hagfish Eptatretus burgeri
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Vincent Laudet; Daniel Ocampo Daza
  • Funders
  • RIKEN Center for Biosystems Dynamics Research
  • Japan Society for the Promotion of Science
  • National Science Foundation
PUBLISHED 08 Nov 2022
https://doi.org/10.12688/f1000research.124051.1
Brief Report metrics
Analysis by metagenomic next-generation sequencing of the lung virome during mechanical ventilation
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Allan Glanville; Sophie Vallet
  • Funder
  • European Society of Intensive Care Medicine
PUBLISHED 02 Nov 2022
https://doi.org/10.12688/f1000research.121947.1
Genome Note metrics
Identification of the exuviae of larva from Teinopalpus aureus Mell, 1923 using the complete mitochondrial genome
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Chang-Bae Kim; Xue-yan Li
  • Funder
  • Zhejiang Normal University
PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.125628.2
Research Article metrics
Revised
Genetic and environmental perturbations alter the rhythmic expression pattern of a circadian long non-coding RNA, Per2AS, in mouse liver
[version 2; peer review: 2 approved]
Peer Reviewers Hikari Yoshitane; Yao Cai
  • Funder
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.124785.1
Data Note metrics
Crude oil hydrocarbons' effect on soil microbial metagenome from Niger Delta polluted soils
[version 1; peer review: 1 not approved]
Peer Reviewers Raghavendran Sivasubramanian
PUBLISHED 28 Sep 2022
https://doi.org/10.12688/f1000research.109602.2
Research Article metrics
Revised
Characterizing gene expression in an in vitro biomechanical strain model of joint health
[version 2; peer review: 1 approved, 1 not approved]
Peer Reviewers Alex Pollen and Jenelle Wallace; Shireen Lamande
  • Funders
  • Achievement Rewards for College Scientists Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 27 Sep 2022
https://doi.org/10.12688/f1000research.124450.1
Genome Note metrics
The complete mitochondrial genome sequence of Chimarrogale leander (Insectivora: Soricidae)
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Chaochao Hu; Adrian Marciszak
  • Funder
  • Dabie Mountains Biodiversity Comprehensive Scientific Investigation project 3
PUBLISHED 26 Sep 2022
https://doi.org/10.12688/f1000research.124416.1
Research Article metrics
HLA class I and discoveries of the HLA-K (pseudogene) related to disease severity and progression in patients with spondyloarthritis in Dr. Soetomo General Hospital, a tertiary health care center in Surabaya, Indonesia
[version 1; peer review: 1 approved, 1 not approved]
Peer Reviewers Jose Antonio Pinto-Tasende; James McCluskey
PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.122453.1
Review metrics
Understanding floral biology for CRISPR-based modification of color and fragrance in horticultural plants
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Muhammad Azam; Albert Chern Sun Wong
PUBLISHED 28 Jul 2022
101-120 of 158 ARTICLES
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