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https://doi.org/10.12688/f1000research.16337.1
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Apoptosis inducing effects of chlorhexidine and essential oil mouthwashes on BHK-21 fibroblast cell line: An in vitro study
[version 1; peer review: 1 approved, 1 not approved]
Shaimaa Ali Hamouda Ali El Basuony, Naglaa El Hossary, Nermine Raouf Amin
Peer Reviewers Marwa Mokbel ElShafei; Thomas E. Lallier
PUBLISHED 26 Oct 2018
https://doi.org/10.12688/f1000research.16290.1
Method Article metrics
A unified GenomeSpace recipe to identify essential genes and associated subnetworks from Genome-Scale CRISPR-Cas9 knockout screens
[version 1; peer review: 2 approved with reservations]
Daniel E. Carlin, Forrest Kim, Trey Ideker, Jill P. Mesirov
Peer Reviewers Shouhong Guang; Xiaowei Wang
  • Funder
  • National Human Genome Research Institute
PUBLISHED 12 Oct 2018
https://doi.org/10.12688/f1000research.15166.2
Research Article metrics
Revised
The inhibition of checkpoint activation by telomeres does not involve exclusion of dimethylation of histone H4 lysine 20 (H4K20me2)
[version 2; peer review: 2 approved, 1 not approved]
Julien Audry, Jinyu Wang, Jessica R. Eisenstatt, Kathleen L. Berkner, Kurt W. Runge
Peer Reviewers Miguel Godinho Ferreira and Toru M. Nakamura; Holger Richly; Jeffrey S. Thompson
  • Funders
  • National Institutes of Health
  • National Science Foundation
LATEST VERSION PUBLISHED 09 Oct 2018
https://doi.org/10.12688/f1000research.13964.2
Research Article metrics
Negative/null result
Revised
Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis
[version 2; peer review: 2 approved]
Geert A. Van Raemdonck, Kara K. Osbak, Xaveer Van Ostade, Chris R. Kenyon
Peer Reviewers Mohd M. Khan; Timothy Palzkill
  • Funder
  • Fonds Wetenschappelijk Onderzoek
LATEST VERSION PUBLISHED 09 Oct 2018
https://doi.org/10.12688/f1000research.13196.2
Method Article metrics
Revised
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
[version 2; peer review: 2 approved, 1 approved with reservations]
Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth
Peer Reviewers Simon Andrews; James W. MacDonald; Peter F.  Hickey
  • Funders
  • Victorian State Government
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 08 Oct 2018
https://doi.org/10.12688/f1000research.11376.2
Research Article metrics
Revised
Results supporting the concept of the oxidant-mediated protein amino acid conversion, a naturally occurring protein engineering process, in human cells
[version 2; peer review: 2 approved, 1 not approved]
Yuichiro J. Suzuki, Jian-Jiang Hao
Peer Reviewers Joaquim Ros; Dolores Pérez-Sala; Adelina Rogowska-Wrzesinska and Michael J. Davies 
  • Funders
  • National Heart, Lung, and Blood Institute
  • National Institute on Aging
LATEST VERSION PUBLISHED 28 Sep 2018
https://doi.org/10.12688/f1000research.16026.2
Software Tool Article metrics
Revised
DRETools: A tool-suite for differential RNA editing detection
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Tyler Weirick, Patrick Trainor, Eric Rouchka, Andrew DeFilippis, Shizuka Uchida
Peer Reviewers Ernesto Picardi; Yicheng Zhao; Graziano Pesole
  • Funders
  • Gheens Foundation
  • National Institutes of Health
  • V.V. Cooke Foundation
  • University of Louisville
LATEST VERSION PUBLISHED 19 Sep 2018
https://doi.org/10.12688/f1000research.16050.1
Research Article metrics
Biomimetic remineralization of acid etched enamel using agarose hydrogel model
[version 1; peer review: 5 approved]
Sara El Moshy, Marwa M.S. Abbass, Amal M. El-Motayam
Peer Reviewers Raneem Farouk Obeid and Radwa Taher el sharkawy; Nehad Samir Taha; Mohamed Shamel; Mahmoud M. Al-Ankily; Mahmoud M. Bakr
PUBLISHED 17 Sep 2018
https://doi.org/10.12688/f1000research.15090.3
Brief Report metrics
Revised
Analysis of the complete genome of hepatitis B virus subgenotype C2 isolate NHB17965 from a HBV infected patient
[version 3; peer review: 2 approved, 1 approved with reservations]
Modhusudon Shaha, Palash Kumar Sarker, Md. Saddam Hossain, Keshob Chandra Das, Munira Jahan, Shuvra Kanti Dey, Shahina Tabassum, Abu Hashem, Md. Salimullah
Peer Reviewers Mohammad Ariful Islam; Paul Klapper; Ashesh Kumar Chowdhury
  • Funder
  • Ministry of Science and Technology, Government of the People’s Republic of Bangladesh
LATEST VERSION PUBLISHED 10 Sep 2018
https://doi.org/10.12688/f1000research.16047.1
Software Tool Article metrics
methyvim: Targeted, robust, and model-free differential methylation analysis in R
[version 1; peer review: 1 approved with reservations, 2 not approved]
Nima S. Hejazi, Rachael V. Phillips, Alan E. Hubbard, Mark J. van der Laan
Peer Reviewers Peter F.  Hickey; Jimmy Breen and Nader Aryamanesh; Nandita Mitra and Ted Westling
  • Funders
  • National Institute of Environmental Health Sciences
  • U.S. National Library of Medicine
PUBLISHED 07 Sep 2018
https://doi.org/10.12688/f1000research.15704.1
Software Tool Article metrics
ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis
[version 1; peer review: 2 approved]
Adam R. Rivers, Kyle C. Weber, Terrence G. Gardner, Shuang Liu, Shalamar D. Armstrong
Peer Reviewers J. Gregory Caporaso; Johanna B. Holm
  • Funder
  • USDA Agricultural Research Service
PUBLISHED 06 Sep 2018
https://doi.org/10.12688/f1000research.14840.2
Research Article metrics
Revised
Absence of toll-like receptor 9 Pro99Leu polymorphism in cervical cancer
[version 2; peer review: 2 approved, 1 not approved]
Alex Chauhan, Nilesh Pandey, Nitin Raithatha, Purvi Patel, Ajesh Desai, Neeraj Jain
Peer Reviewers Gopeshwar Narayan; Balraj Mittal; Bhudev C. Das
  • Funder
  • Charotar University of Science and Technology
LATEST VERSION PUBLISHED 30 Aug 2018
https://doi.org/10.12688/f1000research.15653.1
Data Note metrics
Complete plastome sequences of two Psidium species from the Galápagos Islands
[version 1; peer review: 2 approved]
Bryan Reatini, Maria de Lourdes Torres, Hugo Valdebenito, Todd Vision
Peer Reviewers Michael O. Dillon; Carolyn Proença
  • Funder
  • University of North Carolina at Chapel Hill
PUBLISHED 30 Aug 2018
https://doi.org/10.12688/f1000research.15408.1
Review metrics
Recent advances in understanding DNA replication: cell type–specific adaptation of the DNA replication program
[version 1; peer review: 2 approved]
Antoine Aze, Domenico Maiorano
Peer Reviewers Christian Speck; David M. MacAlpine and Rachel Hoffman
  • Funders
  • INSERM
  • La ligue contre le Cancer
  • MSD AVenir
  • Fondation ARC pour la Recherche sur le cancer
PUBLISHED 29 Aug 2018
https://doi.org/10.12688/f1000research.14795.1
Research Article metrics
Using Lamin B1 mRNA for the early diagnosis of hepatocellular carcinoma: a cross-sectional diagnostic accuracy study
[version 1; peer review: 2 approved]
Amani M. Abdelghany, Nasser Sadek Rezk, Mona Mostafa Osman, Amira I. Hamid, Ashraf Mohammad Al-Breedy, Hoda A. Abdelsattar
Peer Reviewers Dina Fekry; Sherief Abd-Elsalam
PUBLISHED 24 Aug 2018
https://doi.org/10.12688/f1000research.15606.1
Review metrics
Milestones achieved in response to drought stress through reverse genetic approaches
[version 1; peer review: 2 approved]
Baljeet Singh, Sarvjeet Kukreja, Umesh Goutam
Peer Reviewers Elangovan Mani; Pardeep Kumar Bhardwaj
PUBLISHED 17 Aug 2018
https://doi.org/10.12688/f1000research.15845.1
Method Article metrics
Recursive module extraction using Louvain and PageRank
[version 1; peer review: 2 approved]
Dimitri Perrin, Guido Zuccon
Peer Reviewers Raghvendra Mall; Alina Sîrbu
PUBLISHED 14 Aug 2018
https://doi.org/10.12688/f1000research.15391.1
Review metrics
Establishing sharp and homogeneous segments in the hindbrain
[version 1; peer review: 3 approved]
David G. Wilkinson
Peer Reviewers Robb Krumlauf; Kyo Yamasu; Dalit Sela-Donenfeld
  • Funders
  • UK Medical Research Council
  • Wellcome Trust
  • Cancer Research UK
PUBLISHED 13 Aug 2018
https://doi.org/10.12688/f1000research.15579.1
Research Article metrics
Formation of 53BP1 foci and ATM activation under oxidative stress is facilitated by RNA:DNA hybrids and loss of ATM-53BP1 expression promotes photoreceptor cell survival in mice
[version 1; peer review: 1 approved, 3 approved with reservations]
Vaibhav Bhatia, Lourdes Valdés-Sánchez, Daniel Rodriguez-Martinez, Shom Shankar Bhattacharya
Peer Reviewers Travis H. Stracker; Hemant Khanna; Florian Frohns; Maria Tresini
  • Funders
  • Juan de la cierva grant from Ministry of Economy, Industry and Competitiveness, Government of Spain
  • Consejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía
PUBLISHED 10 Aug 2018
https://doi.org/10.12688/f1000research.15146.2
Software Tool Article metrics
Revised
aMatReader: Importing adjacency matrices via Cytoscape Automation
[version 2; peer review: 2 approved]
Brett Settle, David Otasek, John H Morris, Barry Demchak
Peer Reviewers Hideo Matsuda; Kimberly Glass
  • Funders
  • National Resource for Network Biology
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 10 Aug 2018
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